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curprev 12:2112:21, 2 May 2024‎ Brb talk contribs‎ 308,371 bytes +135‎ →‎PARP inhibitor

curprev 11:4411:44, 30 April 2024‎ Brb talk contribs‎ 308,236 bytes +469‎ →‎DESeq2 diagnostic plot
curprev 11:0711:07, 30 April 2024‎ Brb talk contribs‎ 307,767 bytes +58‎ →‎UHR, HBR
curprev 11:0611:06, 30 April 2024‎ Brb talk contribs‎ 307,709 bytes +488‎ →‎Which human reference genome to use?

curprev 11:5911:59, 16 April 2024‎ Brb talk contribs‎ 307,221 bytes +126‎ →‎NGS
curprev 11:5811:58, 16 April 2024‎ Brb talk contribs‎ 307,095 bytes +1,018‎ →‎Tumor mutational burden
curprev 10:3910:39, 16 April 2024‎ Brb talk contribs‎ 306,077 bytes +163‎ →‎Types of mutations
curprev 10:3310:33, 16 April 2024‎ Brb talk contribs‎ 305,914 bytes +362‎ →‎Missense variants

curprev 17:2017:20, 9 April 2024‎ Brb talk contribs‎ 305,552 bytes +358‎ →‎Independent Filtering
curprev 17:0917:09, 9 April 2024‎ Brb talk contribs‎ 305,194 bytes +29‎ →‎Independent Filtering

curprev 15:4415:44, 5 April 2024‎ Brb talk contribs‎ 305,165 bytes +144‎ →‎Mass spectrometry (MS)-based proteomics

curprev 15:2015:20, 3 April 2024‎ Brb talk contribs‎ 305,021 bytes +341‎ →‎RNASeq + ChipSeq
curprev 12:5812:58, 3 April 2024‎ Brb talk contribs‎ 304,680 bytes +28‎ →‎Immunohistochemistry/IHC
curprev 12:5612:56, 3 April 2024‎ Brb talk contribs‎ 304,652 bytes +83‎ →‎Integrate RNA-Seq and DNA-Seq

curprev 22:2522:25, 29 March 2024‎ Brb talk contribs‎ 304,569 bytes +243‎ →‎Quantile normalization

curprev 22:2322:23, 13 March 2024‎ Brb talk contribs‎ 304,326 bytes +84‎ →‎edgeR::filterByExpr

curprev 20:2020:20, 12 March 2024‎ Brb talk contribs‎ 304,242 bytes +168‎ →‎Independent Filtering
curprev 13:0813:08, 12 March 2024‎ Brb talk contribs‎ 304,074 bytes +206‎ →‎Independent Filtering
curprev 11:3811:38, 12 March 2024‎ Brb talk contribs‎ 303,868 bytes +194‎ →‎Ensembl to gene symbol
curprev 08:2908:29, 12 March 2024‎ Brb talk contribs‎ 303,674 bytes +412‎ →‎Independent Filtering

curprev 22:3822:38, 11 March 2024‎ Brb talk contribs‎ 303,262 bytes −12‎ →‎Independent Filtering
curprev 21:5321:53, 11 March 2024‎ Brb talk contribs‎ 303,274 bytes +922‎ →‎Low read count and filtering
curprev 12:3712:37, 11 March 2024‎ Brb talk contribs‎ 302,352 bytes +555‎ →‎Low read count and filtering
curprev 11:1711:17, 11 March 2024‎ Brb talk contribs‎ 301,797 bytes +1,447‎ →‎DNA methylation, Epigenetics

curprev 20:1020:10, 10 March 2024‎ Brb talk contribs‎ 300,350 bytes +227‎ →‎TCGAbiolinks

curprev 12:3912:39, 8 March 2024‎ Brb talk contribs‎ 300,123 bytes +7‎ →‎Low read count and filtering
curprev 12:1312:13, 8 March 2024‎ Brb talk contribs‎ 300,116 bytes +1,603‎ →‎Low read count and filtering
curprev 11:1711:17, 8 March 2024‎ Brb talk contribs‎ 298,513 bytes +1,043‎ →‎Low read count and filtering

curprev 10:4110:41, 28 February 2024‎ Brb talk contribs‎ 297,470 bytes +557‎ →‎Inhibitor genes and activator genes/enhancer genes
curprev 09:5209:52, 28 February 2024‎ Brb talk contribs‎ 296,913 bytes +387‎ →‎inhibitor genes and activator genes/enhancer genes

curprev 10:2110:21, 20 February 2024‎ Brb talk contribs‎ 296,526 bytes +177‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 13:0313:03, 14 February 2024‎ Brb talk contribs‎ 296,349 bytes +1,291‎ →‎SOMAscan assay (proteomic)

curprev 11:1511:15, 9 February 2024‎ Brb talk contribs‎ 295,058 bytes +130‎ →‎Journals

curprev 17:3317:33, 30 January 2024‎ Brb talk contribs‎ 294,928 bytes +216‎ →‎Computational Pathology
curprev 17:1617:16, 30 January 2024‎ Brb talk contribs‎ 294,712 bytes +208‎ →‎Bi-allelic, monoallelic

curprev 16:4816:48, 25 January 2024‎ Brb talk contribs‎ 294,504 bytes +432‎ →‎TMM (Robinson and Oshlack, 2010)

curprev 14:3114:31, 19 January 2024‎ Brb talk contribs‎ 294,072 bytes +12‎ →‎In silico 電腦模擬 (s=simulation)

curprev 12:2512:25, 8 January 2024‎ Brb talk contribs‎ 294,060 bytes +246‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 15:1615:16, 7 January 2024‎ Brb talk contribs‎ 293,814 bytes +181‎ →‎MDPI
curprev 15:0115:01, 7 January 2024‎ Brb talk contribs‎ 293,633 bytes +627‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 14:5214:52, 7 January 2024‎ Brb talk contribs‎ 293,006 bytes +127‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 15:2915:29, 16 November 2023‎ Brb talk contribs‎ 292,879 bytes +15‎ →‎In silico 電腦模擬

curprev 14:0314:03, 7 November 2023‎ Brb talk contribs‎ 292,864 bytes +120‎ →‎DNA methylation, Epigenetics

curprev 08:3808:38, 1 November 2023‎ Brb talk contribs‎ 292,744 bytes +214‎ →‎Protein-protein interaction/PPI

curprev 13:0913:09, 29 October 2023‎ Brb talk contribs‎ 292,530 bytes +699‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 09:2909:29, 26 September 2023‎ Brb talk contribs‎ 291,831 bytes +92‎ →‎PARP inhibitor
curprev 09:2809:28, 26 September 2023‎ Brb talk contribs‎ 291,739 bytes +611‎ →‎PARP inhibitor

curprev 07:5407:54, 22 September 2023‎ Brb talk contribs‎ 291,128 bytes +47‎ →‎PLOS
curprev 07:0607:06, 22 September 2023‎ Brb talk contribs‎ 291,081 bytes +140‎ →‎FPKM (Trapnell et al. 2010)

curprev 12:4412:44, 31 August 2023‎ Brb talk contribs‎ 290,941 bytes +153‎ →‎Protein-protein interaction/PPI

curprev 17:0217:02, 25 August 2023‎ Brb talk contribs‎ 290,788 bytes +1,226‎ →‎in vivo, in vitro, and in situ

curprev 10:2110:21, 15 August 2023‎ Brb talk contribs‎ 289,562 bytes +1,434‎ →‎Germline vs Somatic mutation

curprev 11:0411:04, 14 August 2023‎ Brb talk contribs‎ 288,128 bytes +90‎ →‎VarSAP

curprev 09:4609:46, 11 August 2023‎ Brb talk contribs‎ 288,038 bytes +193‎ →‎SeqCVIBE

curprev 13:5613:56, 7 August 2023‎ Brb talk contribs‎ 287,845 bytes +285‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 09:1109:11, 3 August 2023‎ Brb talk contribs‎ 287,560 bytes +1,105‎ →‎PARP inhibitor

curprev 16:1516:15, 19 July 2023‎ Brb talk contribs‎ 286,455 bytes +2,722‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 13:3313:33, 17 July 2023‎ Brb talk contribs‎ 283,733 bytes +923‎ →‎In situ

curprev 14:1714:17, 9 July 2023‎ Brb talk contribs‎ 282,810 bytes +168‎ →‎Integrate/combine Omics

curprev 15:2615:26, 5 July 2023‎ Brb talk contribs‎ 282,642 bytes −114‎ →‎Mass spectrometry Tag: Manual revert
curprev 15:2515:25, 5 July 2023‎ Brb talk contribs‎ 282,756 bytes +114‎ →‎OlinkRPackage

curprev 17:1017:10, 25 June 2023‎ Brb talk contribs‎ 282,642 bytes +462‎ →‎Time Course Experiments

curprev 22:1922:19, 17 June 2023‎ Brb talk contribs‎ 282,180 bytes +134‎ →‎ggbio

curprev 11:0811:08, 8 June 2023‎ Brb talk contribs‎ 282,046 bytes +18‎ →‎Public Data
curprev 11:0611:06, 8 June 2023‎ Brb talk contribs‎ 282,028 bytes +257‎ →‎Public Data

curprev 15:3815:38, 30 May 2023‎ Brb talk contribs‎ 281,771 bytes +2,273‎ →‎recount3

curprev 10:1210:12, 18 May 2023‎ Brb talk contribs‎ 277,044 bytes +378‎ →‎Tumor purity
curprev 10:0210:02, 18 May 2023‎ Brb talk contribs‎ 276,666 bytes +367‎ →‎Tumor purity

curprev 14:5914:59, 15 May 2023‎ Brb talk contribs‎ 276,299 bytes +189‎ →‎Tumor purity
curprev 08:4008:40, 15 May 2023‎ Brb talk contribs‎ 276,110 bytes +239‎ →‎Undifferentiated cancer

curprev 20:5420:54, 13 May 2023‎ Brb talk contribs‎ 275,871 bytes +73‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 20:5020:50, 13 May 2023‎ Brb talk contribs‎ 275,798 bytes +580‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 11:3811:38, 11 May 2023‎ Brb talk contribs‎ 275,218 bytes +784‎ →‎PARP inhibitor
curprev 11:3111:31, 11 May 2023‎ Brb talk contribs‎ 274,434 bytes +272‎ →‎PARP inhibitor

curprev 16:0016:00, 9 May 2023‎ Brb talk contribs‎ 274,162 bytes +532‎ →‎Mass spectrometry (MS)-based proteomics
curprev 12:2312:23, 9 May 2023‎ Brb talk contribs‎ 273,630 bytes +85‎ →‎Mass spectrometry (MS)-based proteomics
curprev 11:4211:42, 9 May 2023‎ Brb talk contribs‎ 273,545 bytes +1,985‎ →‎Protein-protein interaction/PPI

curprev 11:2511:25, 8 May 2023‎ Brb talk contribs‎ 271,560 bytes +744‎ →‎Tumor mutational burden

curprev 14:2314:23, 3 May 2023‎ Brb talk contribs‎ 270,816 bytes +67‎ →‎edgeR::filterByExpr
curprev 14:2214:22, 3 May 2023‎ Brb talk contribs‎ 270,749 bytes +296‎ →‎Low read count and filtering

curprev 18:5518:55, 27 April 2023‎ Brb talk contribs‎ 270,453 bytes +140‎ →‎edgeR vs DESeq2 vs limma

curprev 21:2421:24, 25 April 2023‎ Brb talk contribs‎ 270,313 bytes +170‎ →‎Time course experiment

curprev 16:4916:49, 24 April 2023‎ Brb talk contribs‎ 270,143 bytes +489‎ →‎RPKM, FPKM, TPM and DESeq
curprev 14:1314:13, 24 April 2023‎ Brb talk contribs‎ 269,654 bytes +447‎ →‎inhibitor genes and activator genes/enhancer genes
curprev 09:3909:39, 24 April 2023‎ Brb talk contribs‎ 269,207 bytes +1,377‎ →‎PARP inhibitor

curprev 15:5515:55, 20 April 2023‎ Brb talk contribs‎ 267,830 bytes +99‎ →‎Quantile normalization

curprev 13:5013:50, 12 April 2023‎ Brb talk contribs‎ 265,333 bytes +177‎ →‎In silico 電腦模擬
curprev 13:3113:31, 12 April 2023‎ Brb talk contribs‎ 265,156 bytes +1,968‎ →‎In silico 電腦模擬

curprev 14:1414:14, 11 April 2023‎ Brb talk contribs‎ 263,188 bytes −22,325‎ →‎cBioPortal, TCGA, PanCanAtlas
curprev 14:0714:07, 11 April 2023‎ Brb talk contribs‎ 285,513 bytes +12,400‎ →‎Understand TCGA Barcode/Sample ID

curprev 15:1815:18, 19 March 2023‎ Brb talk contribs‎ 273,113 bytes +246‎ →‎vst over rlog transformation

curprev 11:4311:43, 12 March 2023‎ Brb talk contribs‎ 272,867 bytes +136‎ →‎Protein-protein interaction/PPI

curprev 11:1211:12, 8 March 2023‎ Brb talk contribs‎ 272,731 bytes +359‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 11:1011:10, 8 March 2023‎ Brb talk contribs‎ 272,372 bytes +455‎ →‎Tumor vs normal
curprev 10:5310:53, 8 March 2023‎ Brb talk contribs‎ 271,917 bytes +113‎ →‎TCGAbiolinks
curprev 10:0310:03, 8 March 2023‎ Brb talk contribs‎ 271,804 bytes +1,371‎ →‎Merge different datasets (different genechips)

curprev 09:1909:19, 7 March 2023‎ Brb talk contribs‎ 270,433 bytes +174‎ →‎Proteomics

curprev 15:5415:54, 6 March 2023‎ Brb talk contribs‎ 270,259 bytes +78‎ →‎TCGAbiolinks
curprev 10:1910:19, 6 March 2023‎ Brb talk contribs‎ 270,181 bytes +3,029‎ →‎edgeR vs DESeq2 vs limma

curprev 11:4611:46, 3 March 2023‎ Brb talk contribs‎ 267,152 bytes +54‎ →‎TCGAbiolinks
curprev 10:5710:57, 3 March 2023‎ Brb talk contribs‎ 267,098 bytes +982‎ →‎Tumor purity

curprev 15:5815:58, 27 February 2023‎ Brb talk contribs‎ 266,116 bytes +972‎ →‎Tumor purity

curprev 22:1422:14, 25 February 2023‎ Brb talk contribs‎ 265,144 bytes +111‎ →‎Rsubread

curprev 17:3917:39, 24 February 2023‎ Brb talk contribs‎ 265,033 bytes +758‎ →‎Tumor vs normal
curprev 17:1917:19, 24 February 2023‎ Brb talk contribs‎ 264,275 bytes +1,529‎ →‎Tumor vs normal
curprev 11:1211:12, 24 February 2023‎ Brb talk contribs‎ 262,746 bytes +163‎ →‎cBioPortal, TCGA, PanCanAtlas

curprev 14:1314:13, 23 February 2023‎ Brb talk contribs‎ 262,583 bytes +70‎ →‎easyRNASeq
curprev 14:0114:01, 23 February 2023‎ Brb talk contribs‎ 262,513 bytes +6,199‎ No edit summary
curprev 12:1612:16, 23 February 2023‎ Brb talk contribs‎ 256,314 bytes +1,625‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 11:0911:09, 23 February 2023‎ Brb talk contribs‎ 254,689 bytes +299‎ →‎Expected_count

curprev 16:4216:42, 22 February 2023‎ Brb talk contribs‎ 254,390 bytes +124‎ →‎RNA-Seq workflow

curprev 14:2514:25, 21 February 2023‎ Brb talk contribs‎ 254,266 bytes +340‎ →‎Missense variants

curprev 10:2010:20, 17 February 2023‎ Brb talk contribs‎ 253,926 bytes +110‎ →‎Germline vs Somatic mutation
curprev 10:1210:12, 17 February 2023‎ Brb talk contribs‎ 253,816 bytes +251‎ →‎Germline vs Somatic mutation
curprev 09:5509:55, 17 February 2023‎ Brb talk contribs‎ 253,565 bytes +332‎ →‎Tumor purity

curprev 15:3115:31, 15 February 2023‎ Brb talk contribs‎ 253,233 bytes +159‎ →‎Tumor purity

curprev 16:3716:37, 13 February 2023‎ Brb talk contribs‎ 253,074 bytes +77‎ →‎Genecards
curprev 16:3616:36, 13 February 2023‎ Brb talk contribs‎ 252,997 bytes +702‎ →‎Gene Annotation

curprev 14:5614:56, 10 February 2023‎ Brb talk contribs‎ 252,295 bytes +268‎ →‎Tumor purity
curprev 14:3514:35, 10 February 2023‎ Brb talk contribs‎ 252,027 bytes +225‎ →‎recount2

curprev 14:0614:06, 8 February 2023‎ Brb talk contribs‎ 251,802 bytes +253‎ →‎Reducing false positives in differential analyses of large RNA sequencing data sets

curprev 21:0221:02, 5 February 2023‎ Brb talk contribs‎ 247,023 bytes +85‎ →‎Tumor mutational burden
curprev 21:0021:00, 5 February 2023‎ Brb talk contribs‎ 246,938 bytes +85‎ →‎Tumor mutational burden
curprev 20:5420:54, 5 February 2023‎ Brb talk contribs‎ 246,853 bytes +1,188‎ →‎Tumor mutational burden

curprev 10:5810:58, 31 January 2023‎ Brb talk contribs‎ 245,665 bytes +61‎ →‎gene's isoform
curprev 10:5410:54, 31 January 2023‎ Brb talk contribs‎ 245,604 bytes +193‎ →‎gene's isoform
curprev 10:0710:07, 31 January 2023‎ Brb talk contribs‎ 245,411 bytes +66‎ →‎Tumor purity

curprev 22:3222:32, 28 January 2023‎ Brb talk contribs‎ 245,345 bytes +148‎ →‎Tumor mutational burden

curprev 11:5911:59, 27 January 2023‎ Brb talk contribs‎ 245,197 bytes +141‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 11:5211:52, 27 January 2023‎ Brb talk contribs‎ 245,056 bytes +27‎ →‎CPM vs TPM
curprev 11:4911:49, 27 January 2023‎ Brb talk contribs‎ 245,029 bytes +288‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)
curprev 11:4411:44, 27 January 2023‎ Brb talk contribs‎ 244,741 bytes +220‎ →‎TMM (Robinson and Oshlack, 2010)

curprev 09:5709:57, 24 January 2023‎ Brb talk contribs‎ 242,899 bytes +2,823‎ →‎Read, fragment
curprev 09:5009:50, 24 January 2023‎ Brb talk contribs‎ 240,076 bytes +1,645‎ →‎What is a read
curprev 09:2809:28, 24 January 2023‎ Brb talk contribs‎ 238,431 bytes +149‎ →‎Rsubread

curprev 14:3514:35, 20 January 2023‎ Brb talk contribs‎ 238,282 bytes +832‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 10:1610:16, 20 January 2023‎ Brb talk contribs‎ 237,450 bytes +783‎ →‎PDX/Xenograft

curprev 17:1217:12, 12 January 2023‎ Brb talk contribs‎ 236,667 bytes +69‎ →‎Tumor mutational burden
curprev 17:0417:04, 12 January 2023‎ Brb talk contribs‎ 236,598 bytes +547‎ →‎Tumor mutational burden
curprev 16:4416:44, 12 January 2023‎ Brb talk contribs‎ 236,051 bytes +166‎ →‎Tumor mutational burden
curprev 16:3616:36, 12 January 2023‎ Brb talk contribs‎ 235,885 bytes +493‎ →‎Tumor mutational burden

curprev 14:2114:21, 10 January 2023‎ Brb talk contribs‎ 225,152 bytes +247‎ →‎Base quality, Mapping quality, Variant quality

curprev 19:1719:17, 8 January 2023‎ Brb talk contribs‎ 224,905 bytes +164‎ →‎Integrate/combine Omics

curprev 15:2015:20, 7 January 2023‎ Brb talk contribs‎ 224,741 bytes +212‎ →‎Z-score transformation
curprev 15:1415:14, 7 January 2023‎ Brb talk contribs‎ 224,529 bytes +262‎ →‎Z-score transformation

curprev 21:2021:20, 5 January 2023‎ Brb talk contribs‎ 224,267 bytes +397‎ →‎DESeq2 experimental design and interpretation

curprev 17:0217:02, 27 December 2022‎ Brb talk contribs‎ 223,870 bytes +116‎ →‎Protein-protein interaction/PPI
curprev 16:5916:59, 27 December 2022‎ Brb talk contribs‎ 223,754 bytes +241‎ →‎PARP inhibitor

curprev 20:3820:38, 19 December 2022‎ Brb talk contribs‎ 223,513 bytes +796‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 13:3413:34, 19 December 2022‎ Brb talk contribs‎ 222,717 bytes +154‎ →‎Protein-protein interaction/PPI

curprev 17:0917:09, 15 December 2022‎ Brb talk contribs‎ 222,563 bytes +72‎ →‎Deconvolve bulk tumor tissue
curprev 17:0817:08, 15 December 2022‎ Brb talk contribs‎ 222,491 bytes +216‎ →‎Integrate RNA-Seq and DNA-Seq

curprev 21:4121:41, 10 November 2022‎ Brb talk contribs‎ 220,426 bytes +171‎ →‎IGV

curprev 15:5815:58, 4 November 2022‎ Brb talk contribs‎ 220,255 bytes +87‎ →‎cBioPortal, TCGA, PanCanAtlas
curprev 15:4915:49, 4 November 2022‎ Brb talk contribs‎ 220,168 bytes +2,056‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 10:5610:56, 4 November 2022‎ Brb talk contribs‎ 218,112 bytes +145‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 10:3910:39, 4 November 2022‎ Brb talk contribs‎ 217,967 bytes +139‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 15:3615:36, 31 October 2022‎ Brb talk contribs‎ 217,828 bytes +130‎ →‎UCSC Xena
curprev 10:5110:51, 31 October 2022‎ Brb talk contribs‎ 217,698 bytes +17‎ →‎UCSC Xena
curprev 10:4510:45, 31 October 2022‎ Brb talk contribs‎ 217,681 bytes +109‎ →‎UCSCXenaTools

curprev 12:2612:26, 19 October 2022‎ Brb talk contribs‎ 217,572 bytes +400‎ →‎Protein-protein interaction/PPI
curprev 12:1912:19, 19 October 2022‎ Brb talk contribs‎ 217,172 bytes +1,305‎ →‎Proteomics

curprev 16:2616:26, 12 October 2022‎ Brb talk contribs‎ 215,867 bytes +102‎ →‎Ensembl to gene symbol

curprev 15:1715:17, 23 September 2022‎ Brb talk contribs‎ 215,765 bytes +40‎ →‎RSEM

curprev 13:5913:59, 15 September 2022‎ Brb talk contribs‎ 215,725 bytes +95‎ →‎SOMAscan assay (proteomic)
curprev 13:5213:52, 15 September 2022‎ Brb talk contribs‎ 215,630 bytes +61‎ →‎SOMAscan assay (proteomic)

curprev 12:0812:08, 18 August 2022‎ Brb talk contribs‎ 215,569 bytes +6‎ →‎Public Data
curprev 09:5609:56, 18 August 2022‎ Brb talk contribs‎ 215,563 bytes +527‎ →‎cBioPortal, TCGA, PanCanAtlas
curprev 09:4809:48, 18 August 2022‎ Brb talk contribs‎ 215,036 bytes +1,813‎ →‎cBioPortal, TCGA, PanCanAtlas

curprev 15:0315:03, 17 August 2022‎ Brb talk contribs‎ 213,223 bytes +760‎ →‎DepMap
curprev 14:2014:20, 17 August 2022‎ Brb talk contribs‎ 212,463 bytes +8‎ →‎DepMap
curprev 12:2012:20, 17 August 2022‎ Brb talk contribs‎ 212,455 bytes +153‎ →‎CCLE

curprev 16:1216:12, 9 August 2022‎ Brb talk contribs‎ 212,302 bytes +170‎ →‎DESeq2 or edgeR

curprev 15:4715:47, 1 August 2022‎ Brb talk contribs‎ 212,132 bytes +214‎ →‎OlinkRPackage
curprev 11:1511:15, 1 August 2022‎ Brb talk contribs‎ 211,918 bytes +322‎ →‎OlinkRPackage
curprev 11:1011:10, 1 August 2022‎ Brb talk contribs‎ 211,596 bytes +144‎ →‎OlinkRPackage

curprev 16:3116:31, 30 July 2022‎ Brb talk contribs‎ 211,452 bytes +162‎ →‎Resources

curprev 07:4707:47, 24 July 2022‎ Brb talk contribs‎ 211,290 bytes +115‎ →‎Scandal
curprev 07:4507:45, 24 July 2022‎ Brb talk contribs‎ 211,175 bytes +210‎ →‎SOMAscan assay (proteomic)

curprev 10:3610:36, 19 July 2022‎ Brb talk contribs‎ 210,965 bytes +114‎ →‎cBioPortal, TCGA, PanCanAtlas
curprev 09:5609:56, 19 July 2022‎ Brb talk contribs‎ 210,851 bytes +3‎ →‎cBioPortal, TCGA, PanCanAtlas

curprev 17:3917:39, 18 July 2022‎ Brb talk contribs‎ 210,848 bytes +145‎ →‎cBioPortal, TCGA, PanCanAtlas

curprev 15:0515:05, 13 July 2022‎ Brb talk contribs‎ 210,703 bytes +27‎ →‎in vivo, in vitro, and in situ

curprev 11:3411:34, 6 July 2022‎ Brb talk contribs‎ 210,676 bytes +161‎ →‎Normalization

curprev 20:1120:11, 30 June 2022‎ Brb talk contribs‎ 210,515 bytes +20‎ →‎Books

curprev 09:0209:02, 23 June 2022‎ Brb talk contribs‎ 210,495 bytes +601‎ →‎PDX/Xenograft

curprev 16:3916:39, 21 June 2022‎ Brb talk contribs‎ 209,894 bytes +187‎ →‎Z-score transformation

curprev 09:2209:22, 7 June 2022‎ Brb talk contribs‎ 209,707 bytes +1,360‎ →‎RSEM
curprev 08:1108:11, 7 June 2022‎ Brb talk contribs‎ 208,347 bytes +153‎ →‎Distribution
curprev 07:5007:50, 7 June 2022‎ Brb talk contribs‎ 208,194 bytes +224‎ →‎Normalization

curprev 15:4015:40, 26 May 2022‎ Brb talk contribs‎ 207,970 bytes +27‎ →‎Cell lines
curprev 15:3915:39, 26 May 2022‎ Brb talk contribs‎ 207,943 bytes +61‎ →‎Cell lines

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curprev 20:2020:20, 11 May 2022‎ Brb talk contribs‎ 211,025 bytes +343‎ →‎proteomics

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curprev 12:0912:09, 3 May 2022‎ Brb talk contribs‎ 210,654 bytes +162‎ →‎Pipeline
curprev 08:2308:23, 3 May 2022‎ Brb talk contribs‎ 210,492 bytes +49‎ →‎RSEM

curprev 10:3310:33, 29 April 2022‎ Brb talk contribs‎ 210,443 bytes +158‎ →‎cBioPortal, TCGA, PanCanAtlas

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curprev 09:1909:19, 12 April 2022‎ Brb talk contribs‎ 210,220 bytes +359‎ →‎GTEx

curprev 09:2909:29, 9 April 2022‎ Brb talk contribs‎ 209,320 bytes −1,096‎ →‎Sample size

curprev 17:0917:09, 25 March 2022‎ Brb talk contribs‎ 210,416 bytes +260‎ →‎Quantile normalization

curprev 17:1917:19, 24 March 2022‎ Brb talk contribs‎ 210,156 bytes +294‎ →‎Simulate negative binomial distribution data
curprev 17:1217:12, 24 March 2022‎ Brb talk contribs‎ 209,862 bytes +205‎ →‎dittoSeq

curprev 11:2611:26, 23 March 2022‎ Brb talk contribs‎ 209,657 bytes +126‎ →‎Merging two gene expression studies; batch effect
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curprev 19:1319:13, 20 March 2022‎ Brb talk contribs‎ 209,310 bytes +429‎ →‎vst over rlog transformation

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curprev 12:0812:08, 7 March 2022‎ Brb talk contribs‎ 208,798 bytes +343‎ →‎Sample size

curprev 14:2314:23, 12 February 2022‎ Brb talk contribs‎ 207,384 bytes +199‎ →‎mutSignatures: analysis of cancer mutational signatures

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curprev 09:1809:18, 17 January 2022‎ Brb talk contribs‎ 206,978 bytes +129‎ →‎如何自学入门生物信息学

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curprev 16:0216:02, 11 January 2022‎ Brb talk contribs‎ 206,644 bytes +12‎ →‎Pseudogene
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curprev 20:3220:32, 8 January 2022‎ Brb talk contribs‎ 204,329 bytes +26‎ →‎Wild type vs mutant

curprev 09:1709:17, 7 January 2022‎ Brb talk contribs‎ 204,303 bytes +855‎ →‎cBioPortal, TCGA, PanCanAtlas
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curprev 13:2813:28, 5 January 2022‎ Brb talk contribs‎ 202,754 bytes +264‎ →‎Normalization

curprev 11:0311:03, 2 January 2022‎ Brb talk contribs‎ 202,490 bytes +81‎ →‎5 common genomics file formats
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curprev 10:4610:46, 2 January 2022‎ Brb talk contribs‎ 202,396 bytes +144‎ →‎SAM/Sequence Alignment Format and BAM format specification

curprev 09:0609:06, 24 December 2021‎ Brb talk contribs‎ 202,252 bytes +204‎ →‎Sample size

curprev 09:2509:25, 17 December 2021‎ Brb talk contribs‎ 202,048 bytes +50‎ →‎tximport

curprev 17:5017:50, 16 December 2021‎ Brb talk contribs‎ 201,998 bytes +154‎ →‎Personalized medicine

curprev 22:5922:59, 10 December 2021‎ Brb talk contribs‎ 201,844 bytes +155‎ →‎Ensembl
curprev 10:2810:28, 10 December 2021‎ Brb talk contribs‎ 201,689 bytes +262‎ →‎Selected Papers

curprev 10:4010:40, 2 November 2021‎ Brb talk contribs‎ 194,171 bytes +69‎ →‎如何自学入门生物信息学

curprev 09:5809:58, 1 November 2021‎ Brb talk contribs‎ 194,102 bytes +267‎ →‎isma: analysis of mutations detected by multiple pipelines

curprev 09:5009:50, 26 October 2021‎ Brb talk contribs‎ 193,835 bytes +348‎ →‎in vivo, in vitro, and in situ

curprev 16:0016:00, 24 October 2021‎ Brb talk contribs‎ 193,487 bytes +156‎ →‎proteomics

curprev 09:0809:08, 15 October 2021‎ Brb talk contribs‎ 193,331 bytes +238‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 21:4721:47, 13 October 2021‎ Brb talk contribs‎ 193,093 bytes +109‎ →‎DNA methylation, Epigenetics
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curprev 16:2916:29, 13 October 2021‎ Brb talk contribs‎ 192,785 bytes +55‎ →‎CCLE
curprev 13:2313:23, 13 October 2021‎ Brb talk contribs‎ 192,730 bytes +27‎ →‎NCI Proteomic Data Commons

curprev 13:5013:50, 12 October 2021‎ Brb talk contribs‎ 192,703 bytes −15‎ →‎cBioPortal and TCGA

curprev 21:1421:14, 9 October 2021‎ Brb talk contribs‎ 192,718 bytes +283‎ →‎Terms

curprev 11:4211:42, 24 September 2021‎ Brb talk contribs‎ 192,435 bytes +500‎ →‎RPKM, FPKM, TPM and DESeq
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curprev 16:3416:34, 30 August 2021‎ Brb talk contribs‎ 191,280 bytes +381‎ →‎Normalization

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curprev 21:3821:38, 19 August 2021‎ Brb talk contribs‎ 190,770 bytes +83‎ →‎Visualization Tags: mobile edit mobile web edit

curprev 16:1216:12, 11 August 2021‎ Brb talk contribs‎ 190,279 bytes +263‎ →‎Integrate/combine Omics
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curprev 16:2316:23, 10 August 2021‎ Brb talk contribs‎ 189,812 bytes +8‎ →‎DNA methylation, Epigenetics
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curprev 14:4014:40, 9 August 2021‎ Brb talk contribs‎ 189,219 bytes +190‎ →‎GSEA

curprev 17:0117:01, 3 August 2021‎ Brb talk contribs‎ 189,029 bytes +976‎ →‎Gene Annotation
curprev 09:4209:42, 3 August 2021‎ Brb talk contribs‎ 188,053 bytes +96‎ →‎vst over rlog transformation
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curprev 16:5616:56, 22 July 2021‎ Brb talk contribs‎ 187,243 bytes +177‎ →‎Fusion gene
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curprev 18:4618:46, 26 June 2021‎ Brb talk contribs‎ 186,729 bytes +175‎ →‎Integrate/combine Omics
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curprev 12:2512:25, 24 June 2021‎ Brb talk contribs‎ 186,347 bytes +832‎ →‎DESeq2 or edgeR

curprev 17:3317:33, 21 June 2021‎ Brb talk contribs‎ 185,515 bytes +107‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)
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curprev 13:5713:57, 12 June 2021‎ Brb talk contribs‎ 184,458 bytes +168‎ →‎SRA

curprev 13:4413:44, 1 June 2021‎ Brb talk contribs‎ 184,290 bytes +71‎ →‎Rsubread

curprev 07:2807:28, 28 May 2021‎ Brb talk contribs‎ 184,219 bytes +182‎ →‎modSaRa2

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curprev 22:0722:07, 12 May 2021‎ Brb talk contribs‎ 183,128 bytes +108‎ →‎DESeq2 or edgeR

curprev 16:3616:36, 11 May 2021‎ Brb talk contribs‎ 183,020 bytes +246‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)

curprev 13:1113:11, 4 May 2021‎ Brb talk contribs‎ 182,774 bytes +1‎ →‎cBioPortal and TCGA

curprev 09:2009:20, 30 April 2021‎ Brb talk contribs‎ 182,773 bytes +240‎ →‎RPKM, FPKM, TPM and DESeq

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curprev 20:5020:50, 25 February 2021‎ Brb talk contribs‎ 177,247 bytes +195‎ →‎DESeq2 or edgeR

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curprev 16:4516:45, 13 February 2021‎ Brb talk contribs‎ 176,905 bytes +407‎ →‎Benchmarking
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curprev 11:0311:03, 12 February 2021‎ Brb talk contribs‎ 176,320 bytes +36‎ →‎RSEM
curprev 10:5610:56, 12 February 2021‎ Brb talk contribs‎ 176,284 bytes +129‎ →‎RPKM, FPKM, TPM and DESeq
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curprev 17:4617:46, 17 December 2020‎ Brb talk contribs‎ 170,434 bytes +1‎ →‎RNA vs DNA
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curprev 14:3514:35, 15 December 2020‎ Brb talk contribs‎ 169,877 bytes +260‎ →‎SeqMonk
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curprev 21:4421:44, 1 December 2020‎ Brb talk contribs‎ 169,333 bytes +43‎ →‎Nextflow
curprev 21:4021:40, 1 December 2020‎ Brb talk contribs‎ 169,290 bytes +152‎ →‎GeneTEFlow

curprev 19:0419:04, 24 November 2020‎ Brb talk contribs‎ 169,138 bytes +209‎ →‎tidybulk
curprev 18:3818:38, 24 November 2020‎ Brb talk contribs‎ 168,929 bytes +110‎ →‎cBioPortal and TCGA
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curprev 17:2817:28, 20 November 2020‎ Brb talk contribs‎ 168,726 bytes +158‎ →‎in vivo
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curprev 22:5422:54, 11 November 2020‎ Brb talk contribs‎ 168,397 bytes +27‎ →‎TMM (Robinson and Oshlack, 2010)
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curprev 16:1016:10, 9 November 2020‎ Brb talk contribs‎ 168,043 bytes +151‎ →‎tximport

curprev 14:3214:32, 6 November 2020‎ Brb talk contribs‎ 166,527 bytes +95‎ →‎Variant simulator

curprev 09:3809:38, 5 November 2020‎ Brb talk contribs‎ 166,432 bytes −12‎ →‎PDX/Xenograft
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curprev 12:0512:05, 3 November 2020‎ Brb talk contribs‎ 166,272 bytes +186‎ →‎GEO

curprev 11:3611:36, 2 November 2020‎ Brb talk contribs‎ 166,086 bytes +166‎ →‎RSEM

curprev 20:2020:20, 31 October 2020‎ Brb talk contribs‎ 165,920 bytes +44‎ →‎Tumor mutational burden
curprev 20:1920:19, 31 October 2020‎ Brb talk contribs‎ 165,876 bytes +256‎ →‎Tumor mutational burden
curprev 18:4418:44, 31 October 2020‎ Brb talk contribs‎ 165,620 bytes +95‎ →‎CRAN packages

curprev 15:0715:07, 28 October 2020‎ Brb talk contribs‎ 165,525 bytes +143‎ →‎cBioPortal and TCGA
curprev 14:5014:50, 28 October 2020‎ Brb talk contribs‎ 165,382 bytes +236‎ →‎cBioPortal and TCGA
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curprev 20:1920:19, 21 October 2020‎ Brb talk contribs‎ 164,838 bytes +1‎ →‎NCI Protemic Data Commons
curprev 20:1920:19, 21 October 2020‎ Brb talk contribs‎ 164,837 bytes +61‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 11:0911:09, 20 October 2020‎ Brb talk contribs‎ 164,776 bytes +614‎ →‎Sharing data

curprev 20:1820:18, 16 October 2020‎ Brb talk contribs‎ 164,162 bytes +187‎ →‎RPKM, FPKM, TPM and DESeq
curprev 17:2717:27, 16 October 2020‎ Brb talk contribs‎ 163,975 bytes +219‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 15:4115:41, 16 October 2020‎ Brb talk contribs‎ 163,756 bytes +379‎ →‎TMM (Robinson and Oshlack, 2010)

curprev 17:3517:35, 15 October 2020‎ Brb talk contribs‎ 163,377 bytes +37‎ →‎Normalization

curprev 15:3615:36, 9 October 2020‎ Brb talk contribs‎ 163,340 bytes +305‎ →‎CCBR Exome Pipeliner

curprev 13:0913:09, 8 October 2020‎ Brb talk contribs‎ 163,035 bytes +206‎ →‎Variant simulator
curprev 13:0113:01, 8 October 2020‎ Brb talk contribs‎ 162,829 bytes +187‎ →‎BAGSE

curprev 21:4421:44, 6 October 2020‎ Brb talk contribs‎ 162,642 bytes +168‎ →‎DESeq or edgeR
curprev 13:4713:47, 6 October 2020‎ Brb talk contribs‎ 162,474 bytes +146‎ →‎Normalization

curprev 17:0617:06, 1 October 2020‎ Brb talk contribs‎ 158,355 bytes +163‎ →‎About the KEGG pathways
curprev 17:0217:02, 1 October 2020‎ Brb talk contribs‎ 158,192 bytes +337‎ →‎GSOAP
curprev 16:1416:14, 1 October 2020‎ Brb talk contribs‎ 157,855 bytes +91‎ →‎Books

curprev 12:2912:29, 28 September 2020‎ Brb talk contribs‎ 157,764 bytes +232‎ →‎Normalization
curprev 12:2212:22, 28 September 2020‎ Brb talk contribs‎ 157,532 bytes +286‎ →‎EBSeq

curprev 21:3921:39, 16 September 2020‎ Brb talk contribs‎ 157,246 bytes +486‎ →‎RNA-Seq workflow

curprev 08:4208:42, 15 September 2020‎ Brb talk contribs‎ 156,760 bytes +177‎ →‎ReportingTools
curprev 08:3508:35, 15 September 2020‎ Brb talk contribs‎ 156,583 bytes +51‎ →‎ReportingTools
curprev 08:0408:04, 15 September 2020‎ Brb talk contribs‎ 156,532 bytes +83‎ →‎RNA sequencing 101

curprev 14:5514:55, 14 September 2020‎ Brb talk contribs‎ 156,449 bytes +93‎ →‎Normalization
curprev 12:4012:40, 14 September 2020‎ Brb talk contribs‎ 156,356 bytes +121‎ →‎ReportingTools
curprev 09:1409:14, 14 September 2020‎ Brb talk contribs‎ 156,235 bytes +188‎ →‎基因结构

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