Genome: Revision history

View logs for this page

Jump to navigation Jump to search

Diff selection: Mark the radio buttons of the revisions to compare and hit enter or the button at the bottom.
Legend: (cur) = difference with latest revision, (prev) = difference with preceding revision, m = minor edit.

curprev 12:4912:49, 12 September 2020‎ Brb talk contribs‎ 156,047 bytes +116‎ →‎基因结构

curprev 09:5109:51, 9 September 2020‎ Brb talk contribs‎ 155,931 bytes +179‎ →‎FFPE Tissue vs Frozen Tissue
curprev 09:5009:50, 9 September 2020‎ Brb talk contribs‎ 155,752 bytes +134‎ →‎gene's isoform

curprev 05:3505:35, 5 September 2020‎ Brb talk contribs‎ 155,618 bytes +274‎ →‎Pipeline

curprev 09:5209:52, 3 September 2020‎ Brb talk contribs‎ 155,344 bytes +191‎ →‎Pipeline

curprev 18:0218:02, 28 August 2020‎ Brb talk contribs‎ 155,153 bytes +595‎ →‎DepMap

curprev 08:1608:16, 25 August 2020‎ Brb talk contribs‎ 154,558 bytes +182‎ →‎cBioPortal and TCGA

curprev 21:2021:20, 23 August 2020‎ Brb talk contribs‎ 147,337 bytes +487‎ →‎Public Data
curprev 17:1017:10, 23 August 2020‎ Brb talk contribs‎ 146,850 bytes +318‎ →‎Public Data

curprev 09:4509:45, 13 August 2020‎ Brb talk contribs‎ 146,532 bytes +42‎ →‎DepMap
curprev 09:4309:43, 13 August 2020‎ Brb talk contribs‎ 146,490 bytes +377‎ →‎GTEx

curprev 13:4213:42, 10 August 2020‎ Brb talk contribs‎ 146,113 bytes −31‎ →‎Single cell RNA-Seq
curprev 13:4013:40, 10 August 2020‎ Brb talk contribs‎ 146,144 bytes +90‎ →‎Single cell RNA-Seq
curprev 12:5912:59, 10 August 2020‎ Brb talk contribs‎ 146,054 bytes +485‎ →‎isma: analysis of mutations detected by multiple pipelines

curprev 14:4414:44, 4 August 2020‎ Brb talk contribs‎ 145,569 bytes +168‎ →‎recount2
curprev 14:1214:12, 4 August 2020‎ Brb talk contribs‎ 145,401 bytes +74‎ →‎curatedTCGAData
curprev 14:1014:10, 4 August 2020‎ Brb talk contribs‎ 145,327 bytes +281‎ →‎NCI's Genomic Data Commons (GDC)/TCGA
curprev 09:3609:36, 4 August 2020‎ Brb talk contribs‎ 145,046 bytes +211‎ →‎Which human reference genome to use?

curprev 20:4620:46, 3 August 2020‎ Brb talk contribs‎ 144,835 bytes +123‎ →‎Ensembl

curprev 19:5419:54, 1 August 2020‎ Brb talk contribs‎ 143,337 bytes −2‎ →‎GenomicDataCommons package
curprev 19:5319:53, 1 August 2020‎ Brb talk contribs‎ 143,339 bytes +148‎ →‎GenomicDataCommons package

curprev 15:0615:06, 29 July 2020‎ Brb talk contribs‎ 143,191 bytes +93‎ →‎Gene Annotation

curprev 09:2409:24, 28 July 2020‎ Brb talk contribs‎ 143,098 bytes +67‎ →‎recount2

curprev 15:0915:09, 27 July 2020‎ Brb talk contribs‎ 143,031 bytes +62‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 17:1517:15, 19 July 2020‎ Brb talk contribs‎ 142,969 bytes +65‎ →‎TCseq: Time course sequencing data analysis

curprev 11:1411:14, 15 July 2020‎ Brb talk contribs‎ 142,904 bytes +181‎ →‎NCI's Genomic Data Commons (GDC)/TCGA
curprev 10:3710:37, 15 July 2020‎ Brb talk contribs‎ 142,723 bytes +2,652‎ →‎tximport
curprev 09:4009:40, 15 July 2020‎ Brb talk contribs‎ 140,071 bytes +133‎ →‎tximport

curprev 15:1115:11, 14 July 2020‎ Brb talk contribs‎ 139,938 bytes +170‎ →‎Gviz

curprev 12:5512:55, 7 July 2020‎ Brb talk contribs‎ 139,768 bytes +226‎ →‎RNA-Seq

curprev 13:5013:50, 6 July 2020‎ Brb talk contribs‎ 139,542 bytes +79‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 12:1712:17, 3 July 2020‎ Brb talk contribs‎ 139,463 bytes +77‎ →‎Books
curprev 12:0512:05, 3 July 2020‎ Brb talk contribs‎ 139,386 bytes +150‎ →‎Books
curprev 11:5411:54, 3 July 2020‎ Brb talk contribs‎ 139,236 bytes +166‎ →‎Books
curprev 11:0711:07, 3 July 2020‎ Brb talk contribs‎ 139,070 bytes +28‎ →‎Books

curprev 22:0322:03, 2 July 2020‎ Brb talk contribs‎ 139,042 bytes −44‎ →‎Books
curprev 13:3513:35, 2 July 2020‎ Brb talk contribs‎ 139,086 bytes +157‎ →‎cBioPortal and TCGA

curprev 13:5813:58, 1 July 2020‎ Brb talk contribs‎ 138,929 bytes +35‎ →‎cBioPortal and TCGA

curprev 20:3620:36, 26 June 2020‎ Brb talk contribs‎ 138,894 bytes +62‎ →‎Gene, Transcript, Coding/Non-coding exon

curprev 08:0108:01, 24 June 2020‎ Brb talk contribs‎ 138,832 bytes +148‎ →‎RNA-Seq workflow

curprev 13:0913:09, 20 June 2020‎ Brb talk contribs‎ 138,684 bytes +141‎ →‎基因结构

curprev 13:4213:42, 3 June 2020‎ Brb talk contribs‎ 138,543 bytes +130‎ →‎Normalization
curprev 10:3910:39, 3 June 2020‎ Brb talk contribs‎ 138,413 bytes +302‎ →‎tximport

curprev 18:1318:13, 2 June 2020‎ Brb talk contribs‎ 138,111 bytes +378‎ →‎RSEM

curprev 09:1709:17, 29 May 2020‎ Brb talk contribs‎ 137,733 bytes +629‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)
curprev 09:1109:11, 29 May 2020‎ Brb talk contribs‎ 137,104 bytes +803‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)

curprev 19:4819:48, 28 May 2020‎ Brb talk contribs‎ 136,301 bytes +191‎ →‎Simulate whole exome

curprev 09:5609:56, 25 May 2020‎ Brb talk contribs‎ 136,110 bytes +153‎ →‎polyester

curprev 11:0211:02, 21 May 2020‎ Brb talk contribs‎ 135,957 bytes +166‎ →‎Selected Papers

curprev 21:3421:34, 17 May 2020‎ Brb talk contribs‎ 135,791 bytes +241‎ →‎dbGap
curprev 21:3121:31, 17 May 2020‎ Brb talk contribs‎ 135,550 bytes +187‎ →‎Merging two gene expression studies

curprev 08:5808:58, 12 May 2020‎ Brb talk contribs‎ 135,363 bytes +131‎ →‎PDX/Xenograft

curprev 09:5209:52, 11 May 2020‎ Brb talk contribs‎ 135,232 bytes +157‎ →‎Pathway analysis

curprev 09:3209:32, 10 May 2020‎ Brb talk contribs‎ 135,075 bytes +175‎ →‎MAF
curprev 09:0909:09, 10 May 2020‎ Brb talk contribs‎ 134,900 bytes +458‎ →‎MAF
curprev 08:2608:26, 10 May 2020‎ Brb talk contribs‎ 134,442 bytes +60‎ →‎MAF
curprev 08:2408:24, 10 May 2020‎ Brb talk contribs‎ 134,382 bytes +426‎ →‎MAF

curprev 13:1213:12, 24 April 2020‎ Brb talk contribs‎ 133,956 bytes +12‎ →‎MAF
curprev 13:1113:11, 24 April 2020‎ Brb talk contribs‎ 133,944 bytes +174‎ →‎MAF

curprev 09:5409:54, 22 April 2020‎ Brb talk contribs‎ 133,206 bytes +60‎ →‎MAF
curprev 09:5309:53, 22 April 2020‎ Brb talk contribs‎ 133,146 bytes +508‎ →‎PDX/Xenograft

curprev 14:0114:01, 8 April 2020‎ Brb talk contribs‎ 132,638 bytes +156‎ →‎Quantile normalization

curprev 20:2120:21, 29 March 2020‎ Brb talk contribs‎ 132,482 bytes +193‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 21:2221:22, 23 March 2020‎ Brb talk contribs‎ 132,289 bytes +124‎ →‎Advice
curprev 08:2108:21, 23 March 2020‎ Brb talk contribs‎ 132,165 bytes +167‎ →‎Pathway analysis

curprev 19:1419:14, 18 March 2020‎ Brb talk contribs‎ 131,998 bytes −2‎ →‎Selected Papers

curprev 09:3709:37, 24 February 2020‎ Brb talk contribs‎ 132,000 bytes +185‎ →‎GenomicDataCommons package
curprev 09:2609:26, 24 February 2020‎ Brb talk contribs‎ 131,815 bytes +136‎ →‎GSEABenchmarkeR: Reproducible GSEA Benchmarking

curprev 12:1912:19, 14 February 2020‎ Brb talk contribs‎ 131,679 bytes +64‎ →‎cBioPortal and TCGA

curprev 22:4822:48, 4 January 2020‎ Brb talk contribs‎ 131,615 bytes +72‎ →‎Normalization
curprev 22:4622:46, 4 January 2020‎ Brb talk contribs‎ 131,543 bytes +46‎ →‎Normalization
curprev 22:4222:42, 4 January 2020‎ Brb talk contribs‎ 131,497 bytes +205‎ →‎Normalization

curprev 22:2622:26, 21 December 2019‎ Brb talk contribs‎ 131,292 bytes +13‎ →‎Normalization
curprev 22:2422:24, 21 December 2019‎ Brb talk contribs‎ 131,279 bytes +336‎ →‎Normalization

curprev 15:3515:35, 11 December 2019‎ Brb talk contribs‎ 130,943 bytes +75‎ →‎PDX/Xenograft

curprev 09:5409:54, 5 December 2019‎ Brb talk contribs‎ 128,288 bytes +97‎ →‎Normalization

curprev 17:0317:03, 4 December 2019‎ Brb talk contribs‎ 128,191 bytes +133‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 22:0922:09, 18 November 2019‎ Brb talk contribs‎ 128,058 bytes +152‎ →‎Selected Papers

curprev 11:0011:00, 8 November 2019‎ Brb talk contribs‎ 127,906 bytes +58‎ →‎PDX/Xenograft
curprev 10:5110:51, 8 November 2019‎ Brb talk contribs‎ 127,848 bytes +100‎ →‎Rsubread

curprev 10:5710:57, 7 November 2019‎ Brb talk contribs‎ 127,748 bytes +314‎ →‎RNA-Seq
curprev 10:4610:46, 7 November 2019‎ Brb talk contribs‎ 127,434 bytes +122‎ →‎RNA-Seq

curprev 16:4316:43, 6 November 2019‎ Brb talk contribs‎ 127,312 bytes +191‎ →‎RPKM, FPKM, TPM and DESeq

curprev 08:4608:46, 30 October 2019‎ Brb talk contribs‎ 127,121 bytes +271‎ →‎RNA sequencing 101

curprev 09:3509:35, 11 October 2019‎ Brb talk contribs‎ 126,850 bytes +217‎ →‎Merging two gene expression studies
curprev 08:4608:46, 11 October 2019‎ Brb talk contribs‎ 126,633 bytes +118‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)
curprev 08:4408:44, 11 October 2019‎ Brb talk contribs‎ 126,515 bytes +129‎ →‎RPKM (Mortazavi et al. 2008)

curprev 08:5308:53, 20 September 2019‎ Brb talk contribs‎ 126,386 bytes +158‎ →‎GEO

curprev 12:2012:20, 9 September 2019‎ Brb talk contribs‎ 126,228 bytes −169,676‎ No edit summary
curprev 08:3008:30, 9 September 2019‎ Brb talk contribs‎ 295,904 bytes +153‎ →‎DBS segmentation algorithm

curprev 16:1316:13, 12 August 2019‎ Brb talk contribs‎ 295,751 bytes −50‎ No edit summary
curprev 11:1511:15, 12 August 2019‎ Brb talk contribs‎ 295,801 bytes +288‎ →‎Papers

curprev 17:3417:34, 2 August 2019‎ Brb talk contribs‎ 295,513 bytes +770‎ →‎Merging two gene expression studies
curprev 16:2116:21, 2 August 2019‎ Brb talk contribs‎ 294,743 bytes +549‎ →‎Merging two gene expression studies

curprev 09:3309:33, 18 July 2019‎ Brb talk contribs‎ 294,194 bytes +486‎ →‎How to use UCSC Table Browser

curprev 15:5315:53, 17 July 2019‎ Brb talk contribs‎ 293,708 bytes +108‎ →‎cBioPortal

curprev 16:0016:00, 8 July 2019‎ Brb talk contribs‎ 293,600 bytes +252‎ →‎fgsea: Fast Gene Set Enrichment Analysis

curprev 09:4909:49, 6 July 2019‎ Brb talk contribs‎ 293,348 bytes +104‎ →‎FastqCleaner

curprev 10:2010:20, 5 July 2019‎ Brb talk contribs‎ 293,244 bytes +203‎ →‎ANNOVAR
curprev 10:0110:01, 5 July 2019‎ Brb talk contribs‎ 293,041 bytes +74‎ →‎Docker
curprev 09:5909:59, 5 July 2019‎ Brb talk contribs‎ 292,967 bytes +204‎ →‎Resources

curprev 11:0511:05, 21 June 2019‎ Brb talk contribs‎ 292,763 bytes +156‎ →‎MOFA: Multi-Omics Factor Analysis
curprev 09:5709:57, 21 June 2019‎ Brb talk contribs‎ 292,607 bytes +159‎ →‎High Performance

curprev 08:5308:53, 19 June 2019‎ Brb talk contribs‎ 292,448 bytes +141‎ →‎scone package: normalization

curprev 21:2721:27, 17 June 2019‎ Brb talk contribs‎ 292,307 bytes +240‎ →‎Convert FASTA to FASTQ

curprev 19:5619:56, 7 June 2019‎ Brb talk contribs‎ 292,067 bytes 0‎ →‎Terms
curprev 19:5519:55, 7 June 2019‎ Brb talk contribs‎ 292,067 bytes +239‎ →‎Nonsynonymous mutation
curprev 07:4007:40, 7 June 2019‎ Brb talk contribs‎ 291,828 bytes +113‎ →‎Merging two gene expression studies

curprev 09:5109:51, 5 June 2019‎ Brb talk contribs‎ 291,715 bytes +95‎ →‎SRP040626 or SRP040540 - Colon and rectal cancer

curprev 08:3908:39, 4 June 2019‎ Brb talk contribs‎ 291,620 bytes +169‎ →‎Detect copy number variation (CNV) from the whole exome sequencing

curprev 08:3608:36, 20 May 2019‎ Brb talk contribs‎ 291,451 bytes +182‎ →‎Splatter: Simulation Of Single-Cell RNA Sequencing Data

curprev 14:4614:46, 9 May 2019‎ Brb talk contribs‎ 291,269 bytes +144‎ →‎CCLE
curprev 14:3814:38, 9 May 2019‎ Brb talk contribs‎ 291,125 bytes +139‎ →‎ISB Cancer Genomics Cloud (ISB-CGC)

curprev 09:2809:28, 27 April 2019‎ Brb talk contribs‎ 290,986 bytes +144‎ →‎GSEA

curprev 16:2516:25, 20 April 2019‎ Brb talk contribs‎ 290,842 bytes +208‎ →‎Normalization

curprev 08:3208:32, 11 April 2019‎ Brb talk contribs‎ 290,634 bytes +140‎ →‎bioSyntax: syntax highlighting for computational biology

curprev 16:0216:02, 9 April 2019‎ Brb talk contribs‎ 290,494 bytes +67‎ →‎Sharing data
curprev 16:0016:00, 9 April 2019‎ Brb talk contribs‎ 290,427 bytes +151‎ →‎NCI's Genomic Data Commons (GDC)/TCGA
curprev 15:4115:41, 9 April 2019‎ Brb talk contribs‎ 290,276 bytes +251‎ →‎GTEx
curprev 15:3415:34, 9 April 2019‎ Brb talk contribs‎ 290,025 bytes +133‎ →‎Public Data

curprev 07:5807:58, 22 March 2019‎ Brb talk contribs‎ 289,892 bytes +69‎ →‎ISB Cancer Genomics Cloud (ISB-CGC)

curprev 15:4815:48, 21 March 2019‎ Brb talk contribs‎ 289,823 bytes +224‎ →‎ISB Cancer Genomics Cloud (ISB-CGC)

curprev 09:1009:10, 19 March 2019‎ Brb talk contribs‎ 289,599 bytes +53‎ →‎Books
curprev 09:0009:00, 19 March 2019‎ Brb talk contribs‎ 289,546 bytes +123‎ →‎RNA sequencing 101

curprev 12:4312:43, 11 March 2019‎ Brb talk contribs‎ 289,423 bytes +166‎ →‎Biometrical Journal
curprev 12:3812:38, 11 March 2019‎ Brb talk contribs‎ 289,257 bytes +180‎ →‎Biostatistics

curprev 21:1121:11, 7 March 2019‎ Brb talk contribs‎ 289,077 bytes +247‎ →‎fgsea: Fast Gene Set Enrichment Analysis

curprev 17:1317:13, 5 March 2019‎ Brb talk contribs‎ 287,893 bytes +1,121‎ →‎RPKM, FPKM and TPM
curprev 16:2416:24, 5 March 2019‎ Brb talk contribs‎ 286,772 bytes +284‎ →‎RPKM, FPKM and TPM
curprev 16:1416:14, 5 March 2019‎ Brb talk contribs‎ 286,488 bytes +184‎ →‎RPKM, FPKM and TPM

curprev 09:1109:11, 1 March 2019‎ Brb talk contribs‎ 286,304 bytes +114‎ →‎SRA

curprev 18:2418:24, 24 February 2019‎ Brb talk contribs‎ 286,190 bytes +220‎ →‎Cloud Computing

curprev 21:3421:34, 21 February 2019‎ Brb talk contribs‎ 285,970 bytes +195‎ →‎Pipeline

curprev 12:3612:36, 7 February 2019‎ Brb talk contribs‎ 285,775 bytes +249‎ →‎Inference

curprev 14:0414:04, 4 February 2019‎ Brb talk contribs‎ 285,526 bytes +120‎ →‎pcgr
curprev 10:3710:37, 4 February 2019‎ Brb talk contribs‎ 285,406 bytes +55‎ →‎Workflow
curprev 10:3310:33, 4 February 2019‎ Brb talk contribs‎ 285,351 bytes +181‎ →‎VEP

curprev 09:4509:45, 31 January 2019‎ Brb talk contribs‎ 285,170 bytes +79‎ →‎RPKM, FPKM and TPM

curprev 14:5814:58, 25 January 2019‎ Brb talk contribs‎ 285,091 bytes +128‎ →‎Gene Annotation
curprev 13:3513:35, 25 January 2019‎ Brb talk contribs‎ 284,963 bytes +133‎ →‎Minimap2

curprev 17:1417:14, 16 January 2019‎ Brb talk contribs‎ 284,830 bytes +44‎ →‎NCI's Genomic Data Commons (GDC)/TCGA
curprev 17:1217:12, 16 January 2019‎ Brb talk contribs‎ 284,786 bytes +139‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 22:1522:15, 15 January 2019‎ Brb talk contribs‎ 284,647 bytes +214‎ →‎Simulate DNA-Seq
curprev 09:5309:53, 15 January 2019‎ Brb talk contribs‎ 284,433 bytes +180‎ →‎如何自学入门生物信息学

curprev 12:0912:09, 14 January 2019‎ Brb talk contribs‎ 284,253 bytes +209‎ →‎Web tools

curprev 21:1921:19, 12 January 2019‎ Brb talk contribs‎ 284,044 bytes +172‎ →‎Other software
curprev 21:1721:17, 12 January 2019‎ Brb talk contribs‎ 283,872 bytes +144‎ →‎Circos Plot

curprev 22:1422:14, 10 January 2019‎ Brb talk contribs‎ 283,728 bytes +242‎ →‎PDX/Xenograft

curprev 21:3821:38, 9 January 2019‎ Brb talk contribs‎ 283,486 bytes +177‎ →‎The best RNA-Seq analysis interface
curprev 21:3121:31, 9 January 2019‎ Brb talk contribs‎ 283,309 bytes +210‎ →‎Coverage

curprev 19:4819:48, 3 January 2019‎ Brb talk contribs‎ 283,099 bytes +195‎ →‎Consensus CDS/CCDS

curprev 21:0621:06, 2 January 2019‎ Brb talk contribs‎ 282,904 bytes +239‎ →‎Normalization

curprev 21:4821:48, 27 December 2018‎ Brb talk contribs‎ 282,665 bytes +169‎ →‎Public Data
curprev 21:4721:47, 27 December 2018‎ Brb talk contribs‎ 282,496 bytes +12‎ →‎BioRxiv

curprev 10:4610:46, 19 December 2018‎ Brb talk contribs‎ 282,484 bytes +121‎ →‎Coverage

curprev 12:1412:14, 18 December 2018‎ Brb talk contribs‎ 282,363 bytes +203‎ →‎RNA-Seq Data Analysis using R/Bioconductor

curprev 09:5309:53, 16 November 2018‎ Brb talk contribs‎ 282,160 bytes +58‎ →‎RNA sequencing 101

curprev 09:4609:46, 31 October 2018‎ Brb talk contribs‎ 282,102 bytes +68‎ →‎Journals

curprev 21:1321:13, 18 October 2018‎ Brb talk contribs‎ 282,034 bytes +164‎ →‎GenomicDataCommons package

curprev 11:4011:40, 16 October 2018‎ Brb talk contribs‎ 281,870 bytes +199‎ →‎Resources

curprev 14:0014:00, 15 October 2018‎ Brb talk contribs‎ 281,671 bytes +42‎ →‎Journals
curprev 13:5613:56, 15 October 2018‎ Brb talk contribs‎ 281,629 bytes +227‎ →‎Integrate Omics

curprev 13:5713:57, 12 October 2018‎ Brb talk contribs‎ 281,402 bytes +387‎ →‎Integrate Omics
curprev 12:5412:54, 12 October 2018‎ Brb talk contribs‎ 281,015 bytes +211‎ →‎Integrate RNA-Seq and DNA-Seq

curprev 14:2014:20, 5 October 2018‎ Brb talk contribs‎ 275,932 bytes +142‎ →‎PDX/Xenograft

curprev 15:0915:09, 4 October 2018‎ Brb talk contribs‎ 275,790 bytes +186‎ →‎PDX/Xenograft

curprev 21:4121:41, 4 September 2018‎ Brb talk contribs‎ 275,604 bytes +143‎ →‎The shocking truth about space travel

curprev 15:5415:54, 27 August 2018‎ Brb talk contribs‎ 275,461 bytes +175‎ →‎DESeq or edgeR

curprev 12:1812:18, 21 August 2018‎ Brb talk contribs‎ 275,286 bytes +169‎ →‎GenomeVIP

curprev 10:3110:31, 18 August 2018‎ Brb talk contribs‎ 275,117 bytes +61‎ →‎Missing mapping quality score

curprev 17:2617:26, 17 August 2018‎ Brb talk contribs‎ 275,056 bytes +179‎ →‎SeqKit

curprev 08:5008:50, 8 August 2018‎ Brb talk contribs‎ 274,877 bytes +517‎ →‎Merging two gene expression studies

curprev 11:1511:15, 6 August 2018‎ Brb talk contribs‎ 274,360 bytes +101‎ →‎Quantile normalization
curprev 11:1211:12, 6 August 2018‎ Brb talk contribs‎ 274,259 bytes +675‎ →‎Quantile normalization
curprev 10:5410:54, 6 August 2018‎ Brb talk contribs‎ 273,584 bytes +239‎ →‎Merging two gene expression studies

curprev 21:0821:08, 24 July 2018‎ Brb talk contribs‎ 273,345 bytes 0‎ →‎scone package: normalization

curprev 20:3520:35, 21 July 2018‎ Brb talk contribs‎ 273,345 bytes +36‎ →‎Readings
curprev 20:3120:31, 21 July 2018‎ Brb talk contribs‎ 273,309 bytes +234‎ →‎Finding differentially expressed genes

curprev 13:1313:13, 19 July 2018‎ Brb talk contribs‎ 273,075 bytes +204‎ →‎Resources
curprev 09:0309:03, 19 July 2018‎ Brb talk contribs‎ 272,871 bytes +85‎ →‎fgsea: Fast Gene Set Enrichment Analysis
curprev 09:0109:01, 19 July 2018‎ Brb talk contribs‎ 272,786 bytes +250‎ →‎Inference

curprev 16:0916:09, 4 July 2018‎ Brb talk contribs‎ 272,536 bytes +8‎ →‎用DNA做身分鑑識

curprev 13:4713:47, 2 July 2018‎ Brb talk contribs‎ 272,528 bytes +788‎ →‎GenomicDataCommons package
curprev 13:1413:14, 2 July 2018‎ Brb talk contribs‎ 271,740 bytes +243‎ →‎GenomicDataCommons package

curprev 08:3608:36, 28 June 2018‎ Brb talk contribs‎ 271,497 bytes +194‎ →‎PDX/Xenograft

curprev 19:1519:15, 26 June 2018‎ Brb talk contribs‎ 271,303 bytes +70‎ →‎Rsubread

curprev 09:5709:57, 19 June 2018‎ Brb talk contribs‎ 271,233 bytes +201‎ →‎RNA-Seq
curprev 09:5409:54, 19 June 2018‎ Brb talk contribs‎ 271,032 bytes +272‎ →‎PDX/Xenograft

curprev 12:0212:02, 12 June 2018‎ Brb talk contribs‎ 270,760 bytes +121‎ →‎QoRTs

curprev 19:2119:21, 28 May 2018‎ Brb talk contribs‎ 270,639 bytes +74‎ →‎Journals
curprev 19:1619:16, 28 May 2018‎ Brb talk contribs‎ 270,565 bytes +194‎ →‎Software

curprev 12:5512:55, 21 May 2018‎ Brb talk contribs‎ 269,201 bytes +102‎ →‎Filtering

curprev 19:1619:16, 20 May 2018‎ Brb talk contribs‎ 269,099 bytes +128‎ →‎GEO
curprev 12:5912:59, 20 May 2018‎ Brb talk contribs‎ 268,971 bytes +78‎ →‎Variant call by HaplotypeCaller (germline) and MuTec2 (somatic)

curprev 20:5020:50, 11 May 2018‎ Brb talk contribs‎ 268,893 bytes +320‎ →‎BWA (DNA)

curprev 10:5710:57, 9 May 2018‎ Brb talk contribs‎ 268,573 bytes +204‎ →‎Merging two gene expression studies

curprev 15:2915:29, 3 May 2018‎ Brb talk contribs‎ 268,369 bytes +158‎ →‎Adding/removing 'chr' to/from vcf files
curprev 15:0715:07, 3 May 2018‎ Brb talk contribs‎ 268,211 bytes +246‎ →‎How can I extract only insertions from a VCF file?

curprev 15:3015:30, 2 May 2018‎ Brb talk contribs‎ 267,965 bytes +98‎ →‎extract allele frequency

curprev 14:2814:28, 1 May 2018‎ Brb talk contribs‎ 267,867 bytes +1‎ →‎NGS
curprev 14:2714:27, 1 May 2018‎ Brb talk contribs‎ 267,866 bytes +759‎ →‎RPKM, FPKM and TPM
curprev 14:1614:16, 1 May 2018‎ Brb talk contribs‎ 267,107 bytes +129‎ →‎RNA-seq: Basics, Applications and Protocol

curprev 21:3421:34, 30 April 2018‎ Brb talk contribs‎ 266,978 bytes +264‎ →‎Splatter: Simulation Of Single-Cell RNA Sequencing Data

curprev 13:3713:37, 20 April 2018‎ Brb talk contribs‎ 265,215 bytes +179‎ No edit summary
curprev 13:3413:34, 20 April 2018‎ Brb talk contribs‎ 265,036 bytes +337‎ →‎MAF/Minor allele frequency
curprev 13:1013:10, 20 April 2018‎ Brb talk contribs‎ 264,699 bytes +87‎ →‎Allele vs Gene

curprev 17:5017:50, 19 April 2018‎ Brb talk contribs‎ 264,612 bytes +77‎ →‎RNA-Seq Data Analysis using R/Bioconductor
curprev 11:2911:29, 19 April 2018‎ Brb talk contribs‎ 264,535 bytes +286‎ →‎Personalized medicine

curprev 09:1209:12, 12 April 2018‎ Brb talk contribs‎ 264,249 bytes +1‎ →‎Merging two gene expression studies
curprev 09:1009:10, 12 April 2018‎ Brb talk contribs‎ 264,248 bytes +277‎ →‎Merging two gene expression studies

curprev 15:5315:53, 10 April 2018‎ Brb talk contribs‎ 263,971 bytes +153‎ →‎Why Do You Need To Use Cdna For Rna-Seq?

curprev 16:2216:22, 6 April 2018‎ Brb talk contribs‎ 263,818 bytes +174‎ →‎DAVID Bioinformatics Resource

curprev 14:4614:46, 5 April 2018‎ Brb talk contribs‎ 263,644 bytes +119‎ →‎PDX/Xenograft
curprev 14:4214:42, 5 April 2018‎ Brb talk contribs‎ 263,525 bytes +595‎ →‎PDX/Xenograft

curprev 19:3019:30, 3 April 2018‎ Brb talk contribs‎ 262,930 bytes +144‎ →‎Coverage

curprev 11:3511:35, 15 March 2018‎ Brb talk contribs‎ 262,786 bytes +338‎ →‎Merging two gene expression studies
curprev 11:2811:28, 15 March 2018‎ Brb talk contribs‎ 262,448 bytes +179‎ →‎Gene expression

curprev 08:5708:57, 12 March 2018‎ Brb talk contribs‎ 262,269 bytes +247‎ →‎Cancer and gene markers

curprev 10:3810:38, 23 February 2018‎ Brb talk contribs‎ 262,022 bytes +1,396‎ →‎Why expected variants are not called

curprev 09:3309:33, 10 February 2018‎ Brb talk contribs‎ 260,626 bytes +384‎ →‎htslib
curprev 09:2109:21, 10 February 2018‎ Brb talk contribs‎ 260,242 bytes +115‎ →‎Detect copy number variation (CNV) from the whole exome sequencing
curprev 09:1309:13, 10 February 2018‎ Brb talk contribs‎ 260,127 bytes +401‎ →‎RNA-Seq Data Analysis using R/Bioconductor

curprev 10:5710:57, 8 February 2018‎ Brb talk contribs‎ 258,301 bytes +97‎ →‎samtools sort

curprev 11:3211:32, 6 February 2018‎ Brb talk contribs‎ 258,204 bytes +637‎ →‎Filtering strategy

curprev 13:2713:27, 1 February 2018‎ Brb talk contribs‎ 253,177 bytes +96‎ →‎Variant call by HaplotypeCaller and MuTec2
curprev 13:1413:14, 1 February 2018‎ Brb talk contribs‎ 253,081 bytes +1,291‎ →‎GATK (Java)
curprev 12:5612:56, 1 February 2018‎ Brb talk contribs‎ 251,790 bytes +416‎ →‎Base quality score recalibration

curprev 16:3616:36, 29 January 2018‎ Brb talk contribs‎ 248,688 bytes +228‎ →‎Container version and Java
curprev 12:3012:30, 29 January 2018‎ Brb talk contribs‎ 248,460 bytes +29‎ →‎samtools view

curprev 22:0522:05, 28 January 2018‎ Brb talk contribs‎ 248,431 bytes +245‎ →‎GATK

curprev 14:5414:54, 26 January 2018‎ Brb talk contribs‎ 247,036 bytes +51‎ →‎bcftools
curprev 14:5014:50, 26 January 2018‎ Brb talk contribs‎ 246,985 bytes +268‎ →‎htslib

curprev 11:0911:09, 19 January 2018‎ Brb talk contribs‎ 241,350 bytes +1,675‎ →‎how to deal with errors

curprev 15:5315:53, 18 January 2018‎ Brb talk contribs‎ 239,675 bytes +377‎ →‎PDX/Xenograft
curprev 15:3615:36, 18 January 2018‎ Brb talk contribs‎ 239,298 bytes +918‎ →‎Novocraft

curprev 14:2414:24, 17 January 2018‎ Brb talk contribs‎ 238,380 bytes +98‎ →‎PDX/Xenograft
curprev 14:1814:18, 17 January 2018‎ Brb talk contribs‎ 238,282 bytes +176‎ →‎PDX/Xenograft

curprev 14:4314:43, 16 January 2018‎ Brb talk contribs‎ 238,106 bytes +59‎ →‎freebayes
curprev 14:4214:42, 16 January 2018‎ Brb talk contribs‎ 238,047 bytes +41‎ →‎Trim Galore!

curprev 22:5722:57, 15 January 2018‎ Brb talk contribs‎ 238,006 bytes +247‎ →‎Mapping quality (MAPQ) vs Alignment score (AS)
curprev 22:3822:38, 15 January 2018‎ Brb talk contribs‎ 237,759 bytes +537‎ →‎Primary, secondary, supplementary alignment
curprev 11:3511:35, 15 January 2018‎ Brb talk contribs‎ 237,222 bytes +425‎ →‎RNA-Seq vs DNA-Seq
curprev 10:3410:34, 15 January 2018‎ Brb talk contribs‎ 236,797 bytes +134‎ →‎Gviz

curprev 09:5709:57, 12 January 2018‎ Brb talk contribs‎ 236,663 bytes +151‎ →‎Alignment Algorithms

curprev 12:4212:42, 10 January 2018‎ Brb talk contribs‎ 235,072 bytes +182‎ →‎Personalized medicine

curprev 14:5614:56, 9 January 2018‎ Brb talk contribs‎ 234,890 bytes +2,178‎ →‎how to deal with errors
curprev 14:5014:50, 9 January 2018‎ Brb talk contribs‎ 232,712 bytes +98‎ →‎SAM validation error
curprev 14:4614:46, 9 January 2018‎ Brb talk contribs‎ 232,614 bytes +277‎ →‎idx file

curprev 16:4316:43, 29 December 2017‎ Brb talk contribs‎ 232,337 bytes +188‎ →‎NCI's Genomic Data Commons (GDC)/TCGA

curprev 17:0717:07, 22 December 2017‎ Brb talk contribs‎ 232,149 bytes +60‎ →‎samtools flagstat: Know how many alignment a bam file contains
curprev 16:4616:46, 22 December 2017‎ Brb talk contribs‎ 232,089 bytes +479‎ →‎GATK

curprev 11:5911:59, 21 December 2017‎ Brb talk contribs‎ 231,610 bytes +154‎ →‎Single Cell RNA-Seq
curprev 11:5711:57, 21 December 2017‎ Brb talk contribs‎ 231,456 bytes +260‎ →‎Single Cell RNA-Seq
curprev 09:4709:47, 21 December 2017‎ Brb talk contribs‎ 231,196 bytes +321‎ →‎wgsim
curprev 09:3109:31, 21 December 2017‎ Brb talk contribs‎ 230,875 bytes +267‎ →‎Simulate DNA-Seq

curprev 16:1916:19, 10 December 2017‎ Brb talk contribs‎ 230,608 bytes +25‎ →‎TCGA2STAT

curprev 14:4114:41, 5 December 2017‎ Brb talk contribs‎ 230,583 bytes +80‎ →‎Cloud Computing

curprev 15:3615:36, 28 November 2017‎ Brb talk contribs‎ 230,503 bytes +287‎ →‎Mapping
curprev 15:3215:32, 28 November 2017‎ Brb talk contribs‎ 230,216 bytes +186‎ →‎Mapping
curprev 15:2915:29, 28 November 2017‎ Brb talk contribs‎ 230,030 bytes +251‎ →‎Mapping

curprev 16:3416:34, 21 November 2017‎ Brb talk contribs‎ 229,779 bytes +26‎ →‎Software
curprev 16:3316:33, 21 November 2017‎ Brb talk contribs‎ 229,753 bytes +176‎ →‎Software

curprev 17:1717:17, 20 November 2017‎ Brb talk contribs‎ 229,577 bytes +73‎ →‎Software

curprev 16:2816:28, 16 November 2017‎ Brb talk contribs‎ 229,504 bytes +125‎ →‎Where to download reference genome
curprev 16:1916:19, 16 November 2017‎ Brb talk contribs‎ 229,379 bytes +183‎ →‎Single Cell RNA-Seq

curprev 15:3715:37, 15 November 2017‎ Brb talk contribs‎ 229,196 bytes +190‎ No edit summary
curprev 15:3315:33, 15 November 2017‎ Brb talk contribs‎ 229,006 bytes +251‎ →‎RNASeq + ChipSeq

curprev 20:2220:22, 11 November 2017‎ Brb talk contribs‎ 228,755 bytes +149‎ →‎Single Cell RNA-Seq

curprev 10:5810:58, 4 November 2017‎ Brb talk contribs‎ 228,606 bytes +255‎ →‎Allele vs Gene

curprev 10:0810:08, 26 October 2017‎ Brb talk contribs‎ 228,351 bytes +143‎ →‎Cancer and gene markers
curprev 10:0010:00, 26 October 2017‎ Brb talk contribs‎ 228,208 bytes +24‎ →‎Cancer and gene markers
curprev 09:5409:54, 26 October 2017‎ Brb talk contribs‎ 228,184 bytes +318‎ →‎Personalized medicine

curprev 08:2608:26, 20 October 2017‎ Brb talk contribs‎ 227,866 bytes +304‎ →‎Papers

curprev 19:3019:30, 17 October 2017‎ Brb talk contribs‎ 227,562 bytes +132‎ →‎Introduction to Sequence Data Analysis
curprev 12:5012:50, 17 October 2017‎ Brb talk contribs‎ 227,430 bytes +110‎ →‎FASTA

curprev 10:2810:28, 14 October 2017‎ Brb talk contribs‎ 227,320 bytes +217‎ →‎Compute the sequence length of a FASTA file
curprev 10:1310:13, 14 October 2017‎ Brb talk contribs‎ 227,103 bytes +114‎ →‎RefSeq categories
curprev 10:0810:08, 14 October 2017‎ Brb talk contribs‎ 226,989 bytes +112‎ →‎RefSeq categories
curprev 09:5409:54, 14 October 2017‎ Brb talk contribs‎ 226,877 bytes +537‎ →‎Where to download reference genome

curprev 08:5708:57, 13 October 2017‎ Brb talk contribs‎ 226,340 bytes +436‎ →‎Lessons
curprev 08:5008:50, 13 October 2017‎ Brb talk contribs‎ 225,904 bytes +138‎ →‎用DNA做身分鑑識

curprev 18:0518:05, 10 October 2017‎ Brb talk contribs‎ 225,766 bytes +168‎ →‎Inference
curprev 18:0118:01, 10 October 2017‎ Brb talk contribs‎ 225,598 bytes +377‎ →‎DESeq or edgeR
curprev 17:3317:33, 10 October 2017‎ Brb talk contribs‎ 225,221 bytes +134‎ →‎Other software

curprev 20:3920:39, 7 October 2017‎ Brb talk contribs‎ 225,087 bytes +801‎ →‎Log.final.out

curprev 15:4115:41, 28 September 2017‎ Brb talk contribs‎ 222,820 bytes +292‎ →‎Cuffdiff

curprev 15:5715:57, 25 September 2017‎ Brb talk contribs‎ 221,401 bytes +150‎ →‎Overview/papers

curprev 14:1014:10, 8 September 2017‎ Brb talk contribs‎ 220,716 bytes +197‎ →‎Simulate DNA-Seq
curprev 14:0414:04, 8 September 2017‎ Brb talk contribs‎ 220,519 bytes −57‎ →‎NEAT
curprev 13:4913:49, 8 September 2017‎ Brb talk contribs‎ 220,576 bytes +272‎ →‎Simulate DNA-Seq

curprev 10:5310:53, 6 September 2017‎ Brb talk contribs‎ 220,304 bytes +37‎ →‎Single Cell RNA-Seq
curprev 10:4910:49, 6 September 2017‎ Brb talk contribs‎ 220,267 bytes +178‎ →‎Single Cell RNA-Seq

curprev 13:2213:22, 31 August 2017‎ Brb talk contribs‎ 220,089 bytes +105‎ →‎PDX/Xenograft

curprev 13:2513:25, 21 August 2017‎ Brb talk contribs‎ 217,445 bytes +210‎ →‎Variant Annotation
curprev 10:4510:45, 21 August 2017‎ Brb talk contribs‎ 217,235 bytes +210‎ →‎Pictures

curprev 09:4509:45, 2 August 2017‎ Brb talk contribs‎ 217,025 bytes +134‎ →‎Online course on Variant calling

curprev 16:4816:48, 27 July 2017‎ Brb talk contribs‎ 216,891 bytes +162‎ →‎Selected Papers
curprev 16:4416:44, 27 July 2017‎ Brb talk contribs‎ 216,729 bytes +126‎ →‎Single Cell RNA-Seq

curprev 08:3008:30, 26 July 2017‎ Brb talk contribs‎ 216,603 bytes +129‎ →‎Simulation

curprev 20:4520:45, 20 July 2017‎ Brb talk contribs‎ 216,474 bytes +178‎ →‎Selected Papers

curprev 19:2719:27, 19 July 2017‎ Brb talk contribs‎ 216,296 bytes +126‎ →‎Resources
curprev 14:2514:25, 19 July 2017‎ Brb talk contribs‎ 216,170 bytes +119‎ →‎R and Bioconductor packages
curprev 13:3013:30, 19 July 2017‎ Brb talk contribs‎ 216,051 bytes +147‎ →‎Selected Papers

curprev 13:5613:56, 10 July 2017‎ Brb talk contribs‎ 215,904 bytes +36‎ →‎PDX/Xenograft
curprev 10:5810:58, 10 July 2017‎ Brb talk contribs‎ 215,868 bytes +92‎ →‎PDX/Xenograft
curprev 09:3209:32, 10 July 2017‎ Brb talk contribs‎ 215,776 bytes +98‎ →‎Use SRAToolKit instead of wget to download

curprev 17:4717:47, 9 July 2017‎ Brb talk contribs‎ 215,678 bytes +126‎ →‎Workshops

curprev 15:0515:05, 7 July 2017‎ Brb talk contribs‎ 215,552 bytes +448‎ →‎STAR (Spliced Transcripts Alignment to a Reference, RNA)

curprev 18:1918:19, 5 July 2017‎ Brb talk contribs‎ 215,104 bytes +77‎ →‎Hisat (RNA/DNA)

curprev 21:0721:07, 9 June 2017‎ Brb talk contribs‎ 215,027 bytes +1,693‎ →‎SnpEff & SnpSift
curprev 13:3313:33, 9 June 2017‎ Brb talk contribs‎ 213,334 bytes +359‎ →‎Single Cell RNA-Seq

curprev 16:1216:12, 24 May 2017‎ Brb talk contribs‎ 211,998 bytes +163‎ →‎Single Cell RNA-Seq

curprev 16:4116:41, 13 May 2017‎ Brb talk contribs‎ 211,835 bytes +80‎ →‎DNA-Seq
curprev 16:4016:40, 13 May 2017‎ Brb talk contribs‎ 211,755 bytes +94‎ →‎DNA-Seq

curprev 13:1513:15, 10 May 2017‎ Brb talk contribs‎ 211,661 bytes +251‎ →‎Subread (RNA/DNA)
curprev 12:2312:23, 10 May 2017‎ Brb talk contribs‎ 211,410 bytes −1‎ →‎Use SRATool Kit instead of wget to download
curprev 11:4511:45, 10 May 2017‎ Brb talk contribs‎ 211,411 bytes +161‎ →‎PDX
curprev 11:2211:22, 10 May 2017‎ Brb talk contribs‎ 211,250 bytes +302‎ →‎Subread (RNA/DNA)

curprev 20:1120:11, 6 May 2017‎ Brb talk contribs‎ 210,948 bytes +363‎ →‎Biocoductor and R packages

curprev 09:3409:34, 4 May 2017‎ Brb talk contribs‎ 210,585 bytes +249‎ →‎PDX

curprev 12:5712:57, 2 May 2017‎ Brb talk contribs‎ 210,336 bytes +60‎ →‎Structural variation
curprev 12:5512:55, 2 May 2017‎ Brb talk contribs‎ 210,276 bytes +378‎ →‎Structural variation
curprev 12:4212:42, 2 May 2017‎ Brb talk contribs‎ 209,898 bytes +79‎ →‎Sequence + Expression

curprev 14:0314:03, 4 April 2017‎ Brb talk contribs‎ 209,819 bytes +264‎ →‎SRP066363 - lung cancer
curprev 10:1710:17, 4 April 2017‎ Brb talk contribs‎ 209,555 bytes +206‎ →‎DNA-Seq
curprev 10:1210:12, 4 April 2017‎ Brb talk contribs‎ 209,349 bytes +247‎ →‎DNA-Seq
curprev 09:5609:56, 4 April 2017‎ Brb talk contribs‎ 209,102 bytes +270‎ →‎DNA Seq Data

curprev 17:0117:01, 31 March 2017‎ Brb talk contribs‎ 208,832 bytes +306‎ →‎SAM validation error

curprev 16:3616:36, 30 March 2017‎ Brb talk contribs‎ 208,526 bytes +32‎ →‎Workflow
curprev 16:3416:34, 30 March 2017‎ Brb talk contribs‎ 208,494 bytes +744‎ →‎samtools view

curprev 13:3713:37, 24 March 2017‎ Brb talk contribs‎ 207,750 bytes +937‎ →‎Picard

curprev 14:3714:37, 20 March 2017‎ Brb talk contribs‎ 206,244 bytes +133‎ →‎Creating index file
curprev 13:3813:38, 20 March 2017‎ Brb talk contribs‎ 206,111 bytes +982‎ →‎Creating index file

Retrieved from "https://wiki.taichimd.us/view/Genome"