User contributions for Brb
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12 March 2024
- 10:4310:43, 12 March 2024 diff hist +111 Linux →login shell (.bash_profile) vs interactive shell (.bashrc)
- 10:4210:42, 12 March 2024 diff hist +112 NAS →Zimablade
- 10:3910:39, 12 March 2024 diff hist +134 Rstudio →Server
- 10:3510:35, 12 March 2024 diff hist +112 Shiny →Deploy on Github Pages
- 10:2810:28, 12 March 2024 diff hist +142 Self hosting →Network
- 10:2110:21, 12 March 2024 diff hist +705 Raspberry →Share internet
- 10:1110:11, 12 March 2024 diff hist +134 Raspberry →Share internet
- 09:0709:07, 12 March 2024 diff hist +8 Office →Status/presence icons
- 09:0409:04, 12 March 2024 diff hist +777 Ggplot2 →palette()
- 08:5408:54, 12 March 2024 diff hist 0 N File:Rainbow v05.png No edit summary current
- 08:5308:53, 12 March 2024 diff hist 0 N File:Rainbow s05.png No edit summary current
- 08:5208:52, 12 March 2024 diff hist +774 N File:Rainbow default.png <syntaxhighlight lang='r'> library(shiny) # Define the UI ui <- fluidPage( titlePanel("Rainbow Color Palette"), sidebarLayout( sidebarPanel( sliderInput("s_value", "Saturation (s):", min = 0, max = 1, value = 1, step = 0.01), sliderInput("v_value", "Value (v):", min = 0, max = 1, value = 1, step = 0.01) ), mainPanel( plotOutput("rainbow_plot") ) ) ) # Define the server server <- function(input, output) { output$rainbow_plot <- renderPlot({ s <-... current
- 08:2908:29, 12 March 2024 diff hist +412 Genome →Independent Filtering
11 March 2024
- 22:3822:38, 11 March 2024 diff hist −12 Genome →Independent Filtering
- 21:5321:53, 11 March 2024 diff hist +922 Genome →Low read count and filtering
- 21:4121:41, 11 March 2024 diff hist +375 N File:Filtered R.png <syntaxhighlight lang='r'> theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, S2, p2, theta, method="BH") which.max(R_BH) # 60% <---- so theta=0.6 is the optimal filtering threshold # 61 max(R_BH) # [1] 380 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.6, lty=2) </syntaxhighlight> current
- 21:3521:35, 11 March 2024 diff hist +3,823 N File:Filtered p.png Note: # x-axis "p cutoff" should be "BH cutoff" or "FDR cutoff". # Each curve represents theta (filtering threshold). For example, theta=.1 means 10% of genes are filtered out before we do multiple testing (or BH adjustment). # It is seen the larger the theta, the more hypotheses are rejected at the same FDR cutoff. For example, #* if theta=0, 251 hypotheses are rejected at FDR=.1 #* if theta=.5, 355 hypotheses are rejected at FDR=.1. <syntaxhighlight lang='r'> BiocManager::install("ALL")... current
- 17:2017:20, 11 March 2024 diff hist +366 Statistics →Correlated data
- 12:3712:37, 11 March 2024 diff hist +555 Genome →Low read count and filtering
- 11:1711:17, 11 March 2024 diff hist +1,447 Genome →DNA methylation, Epigenetics