MediaWiki API result
This is the HTML representation of the JSON format. HTML is good for debugging, but is unsuitable for application use.
Specify the format parameter to change the output format. To see the non-HTML representation of the JSON format, set format=json.
See the complete documentation, or the API help for more information.
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"comment": "<syntaxhighlight lang='r'>\nlibrary(WGCNA)\n\n# Set seed for reproducibility\nset.seed(123)\n\n# 1. Create a \"Scaffold\" for 3 modules (patterns of expression)\nnSamples = 50\n\n# 2. Generate 1000 genes based on these patterns + some noise\n# Module 1: 200 genes correlated with pattern 1\nnoise = matrix(rnorm(nSamples*1000), nrow=nSamples)\n\n# 3. Combine into one expression matrix (Samples as Rows, Genes as Columns)\ndatExpr2 = as.data.frame(noise)\ncolnames(datExpr2) = paste0(\"Gene\", 1:1000)\nrownames(datEx..."
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"comment": "<syntaxhighlight lang='r'>\nlibrary(WGCNA)\n\n# Set seed for reproducibility\nset.seed(123)\n\n# 1. Create a \"Scaffold\" for 3 modules (patterns of expression)\nnSamples = 50\n\n# 2. Generate 1000 genes based on these patterns + some noise\n# Module 1: 200 genes correlated with pattern 1\nnoise = matrix(rnorm(nSamples*1000), nrow=nSamples)\n\n# 3. Combine into one expression matrix (Samples as Rows, Genes as Columns)\ndatExpr2 = as.data.frame(noise)\ncolnames(datExpr2) = paste0(\"Gene\", 1:1000)\nrownames(datEx..."
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"comment": "<syntaxhighlight lang='r'>\n# WGCNA uses standard hierarchical clustering (specifically the hclust function in R), \n# but the \"magic\" that makes it WGCNA is the Topological Overlap Matrix (TOM) used as the distance metric.\n\n# https://en.wikipedia.org/wiki/Weighted_correlation_network_analysis\n# https://cloud.wikis.utexas.edu/wiki/spaces/bioiteam/pages/47714689/Clustering+using+WGCNA\n# https://ngs101.com/how-to-build-gene-co-expression-networks-from-rna-seq-data-using-wgcna-complete-step-by-ste..."
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