xubuntu@xubuntu:~$ ls -l total 36 drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 22 08:52 Desktop drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Documents drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Downloads drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Music drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Pictures drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Public drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Templates -rw-rw-r-- 1 xubuntu xubuntu 32 Feb 17 16:03 test.txt drwxr-xr-x 2 xubuntu xubuntu 4096 Feb 17 10:42 Videos xubuntu@xubuntu:~$ df -h Filesystem Size Used Avail Use% Mounted on /cow 3.9G 121M 3.6G 4% / udev 3.9G 4.0K 3.9G 1% /dev tmpfs 1.6G 824K 1.6G 1% /run /dev/sdb1 61G 4.7G 56G 8% /cdrom /dev/loop0 672M 672M 0 100% /rofs tmpfs 3.9G 16K 3.9G 1% /tmp none 5.0M 0 5.0M 0% /run/lock none 3.9G 88K 3.9G 1% /run/shm xubuntu@xubuntu:~$ ls /cdrom boot EFI md5sum.txt README.diskdefines casper install pics syslinux casper-rw ldlinux.sys pool Uni-USB-Installer-Copying.txt dists license.txt preseed Uni-USB-Installer-Readme.txt xubuntu@xubuntu:~$ ls -l /cdrom total 4187680 drwxr-xr-x 3 root root 32768 Feb 13 19:02 boot drwxr-xr-x 2 root root 32768 Feb 13 19:02 casper -rwxr-xr-x 1 root root 4287627264 Feb 22 08:56 casper-rw drwxr-xr-x 3 root root 32768 Feb 13 19:02 dists drwxr-xr-x 3 root root 32768 Feb 13 19:02 EFI drwxr-xr-x 2 root root 32768 Feb 13 19:02 install -r-xr-xr-x 1 root root 37376 Feb 17 09:33 ldlinux.sys -rwxr-xr-x 1 root root 18092 Apr 4 2012 license.txt -rwxr-xr-x 1 root root 16742 Feb 13 19:02 md5sum.txt drwxr-xr-x 2 root root 32768 Feb 13 19:02 pics drwxr-xr-x 4 root root 32768 Feb 13 19:02 pool drwxr-xr-x 2 root root 32768 Feb 13 19:02 preseed -rwxr-xr-x 1 root root 237 Feb 13 19:02 README.diskdefines drwxr-xr-x 2 root root 32768 Feb 13 19:02 syslinux -rwxr-xr-x 1 root root 49070 Jan 11 11:55 Uni-USB-Installer-Copying.txt -rwxr-xr-x 1 root root 15118 Feb 15 14:43 Uni-USB-Installer-Readme.txt xubuntu@xubuntu:~$ ls -lh /cdrom total 4.0G drwxr-xr-x 3 root root 32K Feb 13 19:02 boot drwxr-xr-x 2 root root 32K Feb 13 19:02 casper -rwxr-xr-x 1 root root 4.0G Feb 22 08:56 casper-rw drwxr-xr-x 3 root root 32K Feb 13 19:02 dists drwxr-xr-x 3 root root 32K Feb 13 19:02 EFI drwxr-xr-x 2 root root 32K Feb 13 19:02 install -r-xr-xr-x 1 root root 37K Feb 17 09:33 ldlinux.sys -rwxr-xr-x 1 root root 18K Apr 4 2012 license.txt -rwxr-xr-x 1 root root 17K Feb 13 19:02 md5sum.txt drwxr-xr-x 2 root root 32K Feb 13 19:02 pics drwxr-xr-x 4 root root 32K Feb 13 19:02 pool drwxr-xr-x 2 root root 32K Feb 13 19:02 preseed -rwxr-xr-x 1 root root 237 Feb 13 19:02 README.diskdefines drwxr-xr-x 2 root root 32K Feb 13 19:02 syslinux -rwxr-xr-x 1 root root 48K Jan 11 11:55 Uni-USB-Installer-Copying.txt -rwxr-xr-x 1 root root 15K Feb 15 14:43 Uni-USB-Installer-Readme.txt xubuntu@xubuntu:~$ df -h Filesystem Size Used Avail Use% Mounted on /cow 3.9G 121M 3.6G 4% / udev 3.9G 4.0K 3.9G 1% /dev tmpfs 1.6G 824K 1.6G 1% /run /dev/sdb1 61G 4.7G 56G 8% /cdrom /dev/loop0 672M 672M 0 100% /rofs tmpfs 3.9G 16K 3.9G 1% /tmp none 5.0M 0 5.0M 0% /run/lock none 3.9G 88K 3.9G 1% /run/shm xubuntu@xubuntu:~$ R The program 'R' is currently not installed. You can install it by typing: sudo apt-get install r-base-core xubuntu@xubuntu:~$ sudo apt-get update Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/main TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/multiverse TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/restricted TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/universe TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/main Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/main Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/multiverse Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/multiverse Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/restricted Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/restricted Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/universe Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/universe Translation-en Ign http://security.ubuntu.com precise-security InRelease Get:1 http://security.ubuntu.com precise-security Release.gpg [198 B] Get:2 http://security.ubuntu.com precise-security Release [49.6 kB] Ign http://archive.ubuntu.com precise InRelease Ign http://archive.ubuntu.com precise-updates InRelease Get:3 http://security.ubuntu.com precise-security/main amd64 Packages [228 kB] Hit http://archive.ubuntu.com precise Release.gpg Get:4 http://archive.ubuntu.com precise-updates Release.gpg [198 B] Get:5 http://security.ubuntu.com precise-security/restricted amd64 Packages [3,969 B] Get:6 http://security.ubuntu.com precise-security/universe amd64 Packages [68.2 kB] Hit http://archive.ubuntu.com precise Release Get:7 http://security.ubuntu.com precise-security/multiverse amd64 Packages [2,193 B] Get:8 http://security.ubuntu.com precise-security/main i386 Packages [237 kB] Get:9 http://archive.ubuntu.com precise-updates Release [49.6 kB] Get:10 http://security.ubuntu.com precise-security/restricted i386 Packages [3,968 B] Get:11 http://security.ubuntu.com precise-security/universe i386 Packages [69.9 kB] Get:12 http://security.ubuntu.com precise-security/multiverse i386 Packages [2,368 B] Get:13 http://security.ubuntu.com precise-security/main TranslationIndex [74 B] Get:14 http://security.ubuntu.com precise-security/multiverse TranslationIndex [71 B] Get:15 http://security.ubuntu.com precise-security/restricted TranslationIndex [71 B] Get:16 http://security.ubuntu.com precise-security/universe TranslationIndex [73 B] Hit http://archive.ubuntu.com precise/main amd64 Packages Hit http://archive.ubuntu.com precise/restricted amd64 Packages Hit http://archive.ubuntu.com precise/universe amd64 Packages Hit http://archive.ubuntu.com precise/multiverse amd64 Packages Hit http://archive.ubuntu.com precise/main i386 Packages Hit http://archive.ubuntu.com precise/restricted i386 Packages Hit http://archive.ubuntu.com precise/universe i386 Packages Hit http://archive.ubuntu.com precise/multiverse i386 Packages Hit http://archive.ubuntu.com precise/main TranslationIndex Hit http://archive.ubuntu.com precise/multiverse TranslationIndex Get:17 http://security.ubuntu.com precise-security/main Translation-en [111 kB] Hit http://archive.ubuntu.com precise/restricted TranslationIndex Get:18 http://security.ubuntu.com precise-security/multiverse Translation-en [995 B] Get:19 http://security.ubuntu.com precise-security/restricted Translation-en [978 B] Get:20 http://security.ubuntu.com precise-security/universe Translation-en [43.2 kB] Hit http://archive.ubuntu.com precise/universe TranslationIndex Get:21 http://archive.ubuntu.com precise-updates/main amd64 Packages [582 kB] Get:22 http://archive.ubuntu.com precise-updates/restricted amd64 Packages [9,565 B] Get:23 http://archive.ubuntu.com precise-updates/universe amd64 Packages [182 kB] Get:24 http://archive.ubuntu.com precise-updates/multiverse amd64 Packages [9,421 B] Get:25 http://archive.ubuntu.com precise-updates/main i386 Packages [593 kB] Get:26 http://archive.ubuntu.com precise-updates/restricted i386 Packages [9,503 B] Get:27 http://archive.ubuntu.com precise-updates/universe i386 Packages [184 kB] Get:28 http://archive.ubuntu.com precise-updates/multiverse i386 Packages [10.4 kB] Get:29 http://archive.ubuntu.com precise-updates/main TranslationIndex [3,564 B] Get:30 http://archive.ubuntu.com precise-updates/multiverse TranslationIndex [2,605 B] Get:31 http://archive.ubuntu.com precise-updates/restricted TranslationIndex [2,461 B] Get:32 http://archive.ubuntu.com precise-updates/universe TranslationIndex [2,850 B] Hit http://archive.ubuntu.com precise/main Translation-en Hit http://archive.ubuntu.com precise/multiverse Translation-en Hit http://archive.ubuntu.com precise/restricted Translation-en Hit http://archive.ubuntu.com precise/universe Translation-en Get:33 http://archive.ubuntu.com precise-updates/main Translation-en [260 kB] Get:34 http://archive.ubuntu.com precise-updates/multiverse Translation-en [5,694 B] Get:35 http://archive.ubuntu.com precise-updates/restricted Translation-en [2,328 B] Get:36 http://archive.ubuntu.com precise-updates/universe Translation-en [108 kB] Fetched 2,839 kB in 9s (312 kB/s) Reading package lists... Done W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/main i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_main_binary-i386_Packages) W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/multiverse i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_multiverse_binary-i386_Packages) W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/restricted i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_restricted_binary-i386_Packages) W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/universe i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_universe_binary-i386_Packages) W: You may want to run apt-get update to correct these problems xubuntu@xubuntu:~$ sudo apt-get update Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise InRelease Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Release.gpg Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Release Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Packages/DiffIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/main/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/multiverse/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/restricted/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/main TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/multiverse TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/restricted TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/universe TranslationIndex Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) dists/precise/universe/binary-i386/ Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/main Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/main Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/multiverse Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/multiverse Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/restricted Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/restricted Translation-en Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/universe Translation-en_US Ign cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213) precise/universe Translation-en Ign http://security.ubuntu.com precise-security InRelease Hit http://security.ubuntu.com precise-security Release.gpg Hit http://security.ubuntu.com precise-security Release Hit http://security.ubuntu.com precise-security/main amd64 Packages Hit http://security.ubuntu.com precise-security/restricted amd64 Packages Hit http://security.ubuntu.com precise-security/universe amd64 Packages Hit http://security.ubuntu.com precise-security/multiverse amd64 Packages Hit http://security.ubuntu.com precise-security/main i386 Packages Hit http://security.ubuntu.com precise-security/restricted i386 Packages Hit http://security.ubuntu.com precise-security/universe i386 Packages Hit http://security.ubuntu.com precise-security/multiverse i386 Packages Hit http://security.ubuntu.com precise-security/main TranslationIndex Hit http://security.ubuntu.com precise-security/multiverse TranslationIndex Hit http://security.ubuntu.com precise-security/restricted TranslationIndex Hit http://security.ubuntu.com precise-security/universe TranslationIndex Hit http://security.ubuntu.com precise-security/main Translation-en Hit http://security.ubuntu.com precise-security/multiverse Translation-en Hit http://security.ubuntu.com precise-security/restricted Translation-en Ign http://archive.ubuntu.com precise InRelease Ign http://archive.ubuntu.com precise-updates InRelease Hit http://security.ubuntu.com precise-security/universe Translation-en Hit http://archive.ubuntu.com precise Release.gpg Hit http://archive.ubuntu.com precise-updates Release.gpg Hit http://archive.ubuntu.com precise Release Hit http://archive.ubuntu.com precise-updates Release Hit http://archive.ubuntu.com precise/main amd64 Packages Hit http://archive.ubuntu.com precise/restricted amd64 Packages Hit http://archive.ubuntu.com precise/universe amd64 Packages Hit http://archive.ubuntu.com precise/multiverse amd64 Packages Hit http://archive.ubuntu.com precise/main i386 Packages Hit http://archive.ubuntu.com precise/restricted i386 Packages Hit http://archive.ubuntu.com precise/universe i386 Packages Hit http://archive.ubuntu.com precise/multiverse i386 Packages Hit http://archive.ubuntu.com precise/main TranslationIndex Hit http://archive.ubuntu.com precise/multiverse TranslationIndex Hit http://archive.ubuntu.com precise/restricted TranslationIndex Hit http://archive.ubuntu.com precise/universe TranslationIndex Hit http://archive.ubuntu.com precise-updates/main amd64 Packages Hit http://archive.ubuntu.com precise-updates/restricted amd64 Packages Hit http://archive.ubuntu.com precise-updates/universe amd64 Packages Hit http://archive.ubuntu.com precise-updates/multiverse amd64 Packages Hit http://archive.ubuntu.com precise-updates/main i386 Packages Hit http://archive.ubuntu.com precise-updates/restricted i386 Packages Hit http://archive.ubuntu.com precise-updates/universe i386 Packages Hit http://archive.ubuntu.com precise-updates/multiverse i386 Packages Hit http://archive.ubuntu.com precise-updates/main TranslationIndex Hit http://archive.ubuntu.com precise-updates/multiverse TranslationIndex Hit http://archive.ubuntu.com precise-updates/restricted TranslationIndex Hit http://archive.ubuntu.com precise-updates/universe TranslationIndex Hit http://archive.ubuntu.com precise/main Translation-en Hit http://archive.ubuntu.com precise/multiverse Translation-en Hit http://archive.ubuntu.com precise/restricted Translation-en Hit http://archive.ubuntu.com precise/universe Translation-en Hit http://archive.ubuntu.com precise-updates/main Translation-en Hit http://archive.ubuntu.com precise-updates/multiverse Translation-en Hit http://archive.ubuntu.com precise-updates/restricted Translation-en Hit http://archive.ubuntu.com precise-updates/universe Translation-en Reading package lists... Done W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/main i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_main_binary-i386_Packages) W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/multiverse i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_multiverse_binary-i386_Packages) W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/restricted i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_restricted_binary-i386_Packages) W: Duplicate sources.list entry cdrom://Xubuntu 12.04.2 LTS _Precise Pangolin_ - Release amd64 (20130213)/ precise/universe i386 Packages (/var/lib/apt/lists/Xubuntu%2012.04.2%20LTS%20%5fPrecise%20Pangolin%5f%20-%20Release%20amd64%20(20130213)_dists_precise_universe_binary-i386_Packages) W: You may want to run apt-get update to correct these problems xubuntu@xubuntu:~$ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 Executing: gpg --ignore-time-conflict --no-options --no-default-keyring --secret-keyring /tmp/tmp.SoEi7qn60D --trustdb-name /etc/apt/trustdb.gpg --keyring /etc/apt/trusted.gpg --primary-keyring /etc/apt/trusted.gpg --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 gpg: requesting key E084DAB9 from hkp server keyserver.ubuntu.com gpg: key E084DAB9: public key "Michael Rutter " imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) xubuntu@xubuntu:~$ cd Downloads/ xubuntu@xubuntu:~/Downloads$ wget http://cran.r-project.org/src/base/R-2/R-2.15.2.tar.gz --2013-02-22 09:07:30-- http://cran.r-project.org/src/base/R-2/R-2.15.2.tar.gz Resolving cran.r-project.org (cran.r-project.org)... 137.208.57.37 Connecting to cran.r-project.org (cran.r-project.org)|137.208.57.37|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 24338934 (23M) [application/x-gzip] Saving to: `R-2.15.2.tar.gz' 100%[======================================>] 24,338,934 240K/s in 81s 2013-02-22 09:08:51 (293 KB/s) - `R-2.15.2.tar.gz' saved [24338934/24338934] xubuntu@xubuntu:~/Downloads$ sudo apt-get install r-base-dev Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: autoconf automake autotools-dev build-essential cdbs debhelper dh-apparmor dh-translations dpkg-dev fakeroot g++ g++-4.6 gettext html2text intltool intltool-debian libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libblas-dev libblas3gf libbz2-dev libdpkg-perl libgettextpo0 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3gf libmail-sendmail-perl libncurses5-dev libpcre3-dev libpcrecpp0 libpng12-dev libreadline-dev libreadline6-dev libstdc++6-4.6-dev libsys-hostname-long-perl libtinfo-dev libunistring0 po-debconf python-scour r-base-core r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended tk8.5 zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool devscripts dh-make debian-keyring g++-multilib g++-4.6-multilib gcc-4.6-doc libstdc++6-4.6-dbg gettext-doc ncurses-doc libstdc++6-4.6-doc libmail-box-perl python-rsvg ess r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html The following NEW packages will be installed: autoconf automake autotools-dev build-essential cdbs debhelper dh-apparmor dh-translations dpkg-dev fakeroot g++ g++-4.6 gettext html2text intltool intltool-debian libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libblas-dev libblas3gf libbz2-dev libdpkg-perl libgettextpo0 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3gf libmail-sendmail-perl libncurses5-dev libpcre3-dev libpcrecpp0 libpng12-dev libreadline-dev libreadline6-dev libstdc++6-4.6-dev libsys-hostname-long-perl libtinfo-dev libunistring0 po-debconf python-scour r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended tk8.5 zlib1g-dev 0 upgraded, 63 newly installed, 0 to remove and 25 not upgraded. Need to get 61.0 MB/61.1 MB of archives. After this operation, 128 MB of additional disk space will be used. Do you want to continue [Y/n]? WARNING: The following packages cannot be authenticated! r-base-core r-base-dev r-cran-boot r-cran-mass r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cran-matrix r-cran-nlme r-cran-mgcv r-cran-nnet r-cran-survival r-cran-rpart r-cran-spatial r-doc-html r-recommended Install these packages without verification [y/N]? Y Get:1 http://security.ubuntu.com/ubuntu/ precise-security/main dh-apparmor all 2.7.102-0ubuntu3.7 [9,030 B] Get:2 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-base-core 2.15.2-1precise0 [20.9 MB] Get:3 http://archive.ubuntu.com/ubuntu/ precise/main libunistring0 amd64 0.9.3-5 [427 kB] Get:4 http://archive.ubuntu.com/ubuntu/ precise/main libgettextpo0 amd64 0.18.1.1-5ubuntu3 [120 kB] Get:5 http://archive.ubuntu.com/ubuntu/ precise/main libpcrecpp0 amd64 8.12-4 [16.2 kB] Get:6 http://archive.ubuntu.com/ubuntu/ precise/main autoconf all 2.68-1ubuntu2 [560 kB] Get:7 http://archive.ubuntu.com/ubuntu/ precise/main autotools-dev all 20120210.1ubuntu1 [42.4 kB] Get:8 http://archive.ubuntu.com/ubuntu/ precise/main automake all 1:1.11.3-1ubuntu2 [571 kB] Get:9 http://archive.ubuntu.com/ubuntu/ precise/main libstdc++6-4.6-dev amd64 4.6.3-1ubuntu5 [1,660 kB] Get:10 http://archive.ubuntu.com/ubuntu/ precise/main g++-4.6 amd64 4.6.3-1ubuntu5 [6,954 kB] Get:11 http://archive.ubuntu.com/ubuntu/ precise/main g++ amd64 4:4.6.3-1ubuntu5 [1,442 B] Get:12 http://archive.ubuntu.com/ubuntu/ precise-updates/main libdpkg-perl all 1.16.1.2ubuntu7.1 [180 kB] Get:13 http://archive.ubuntu.com/ubuntu/ precise-updates/main dpkg-dev all 1.16.1.2ubuntu7.1 [469 kB] Get:14 http://archive.ubuntu.com/ubuntu/ precise-updates/main build-essential amd64 11.5ubuntu2.1 [5,816 B] Get:15 http://archive.ubuntu.com/ubuntu/ precise/main html2text amd64 1.3.2a-15 [104 kB] Get:16 http://archive.ubuntu.com/ubuntu/ precise/main gettext amd64 0.18.1.1-5ubuntu3 [1,188 kB] Get:17 http://archive.ubuntu.com/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:18 http://archive.ubuntu.com/ubuntu/ precise/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:19 http://archive.ubuntu.com/ubuntu/ precise/main debhelper all 9.20120115ubuntu3 [616 kB] Get:20 http://archive.ubuntu.com/ubuntu/ precise/main intltool all 0.50.2-2 [52.0 kB] Get:21 http://archive.ubuntu.com/ubuntu/ precise/main dh-translations all 116 [21.6 kB] Get:22 http://archive.ubuntu.com/ubuntu/ precise/main python-scour all 0.26-3 [46.5 kB] Get:23 http://archive.ubuntu.com/ubuntu/ precise/main cdbs all 0.4.100ubuntu2 [47.6 kB] Get:24 http://archive.ubuntu.com/ubuntu/ precise/main libalgorithm-diff-perl all 1.19.02-2 [50.7 kB] Get:25 http://archive.ubuntu.com/ubuntu/ precise/main libalgorithm-diff-xs-perl amd64 0.04-2build2 [12.4 kB] Get:26 http://archive.ubuntu.com/ubuntu/ precise/main libalgorithm-merge-perl all 0.08-2 [12.7 kB] Get:27 http://archive.ubuntu.com/ubuntu/ precise/main libblas3gf amd64 1.2.20110419-2ubuntu1 [287 kB] Get:28 http://archive.ubuntu.com/ubuntu/ precise/main libblas-dev amd64 1.2.20110419-2ubuntu1 [302 kB] Get:29 http://archive.ubuntu.com/ubuntu/ precise/main libbz2-dev amd64 1.0.6-1 [32.4 kB] Get:30 http://archive.ubuntu.com/ubuntu/ precise-updates/main libjpeg-turbo8-dev amd64 1.1.90+svn733-0ubuntu4.1 [391 kB] Get:31 http://archive.ubuntu.com/ubuntu/ precise/main libjpeg8-dev amd64 8c-2ubuntu7 [1,544 B] Get:32 http://archive.ubuntu.com/ubuntu/ precise/main libjpeg-dev all 8c-2ubuntu7 [1,536 B] Get:33 http://archive.ubuntu.com/ubuntu/ precise/main liblapack3gf amd64 3.3.1-1 [4,424 kB] Get:34 http://archive.ubuntu.com/ubuntu/ precise/main liblapack-dev amd64 3.3.1-1 [4,873 kB] Get:35 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-base-dev 2.15.2-1precise0 [3,898 B] Get:36 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-boot 1.3-7-1precise0 [567 kB] Get:37 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-mass 7.3-23-1precise0 [1,038 kB] Get:38 http://archive.ubuntu.com/ubuntu/ precise/main libsys-hostname-long-perl all 1.4-2 [11.4 kB] Get:39 http://archive.ubuntu.com/ubuntu/ precise/main libmail-sendmail-perl all 0.79.16-1 [26.5 kB] Get:40 http://archive.ubuntu.com/ubuntu/ precise/main libtinfo-dev amd64 5.9-4 [103 kB] Get:41 http://archive.ubuntu.com/ubuntu/ precise/main libncurses5-dev amd64 5.9-4 [222 kB] Get:42 http://archive.ubuntu.com/ubuntu/ precise/main libpcre3-dev amd64 8.12-4 [232 kB] Get:43 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-class 7.3-5-1precise0 [69.8 kB] Get:44 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-cluster 1.14.3-1precise0 [474 kB] Get:45 http://archive.ubuntu.com/ubuntu/ precise/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu4 [165 kB] Get:46 http://archive.ubuntu.com/ubuntu/ precise/main libpng12-dev amd64 1.2.46-3ubuntu4 [207 kB] Get:47 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-codetools 0.2-8-1precise0 [45.0 kB] Get:48 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-foreign 0.8.52-1precise0 [225 kB] Get:49 http://archive.ubuntu.com/ubuntu/ precise/main libreadline6-dev amd64 6.2-8 [264 kB] Get:50 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-kernsmooth 2.23-8-1precise0 [63.0 kB] Get:51 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-lattice 0.20-13-1precise0 [719 kB] Get:52 http://archive.ubuntu.com/ubuntu/ precise/main libreadline-dev amd64 6.2-8 [932 B] Get:53 http://archive.ubuntu.com/ubuntu/ precise/main tk8.5 amd64 8.5.11-1 [1,003 kB] Get:54 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-matrix 1.0-11-1precise0 [3,135 kB] Get:55 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-nlme 3.1.108-1precise0 [2,080 kB] Get:56 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-mgcv 1.7-22-1precise0 [1,417 kB] Get:57 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-nnet 7.3-5-1precise0 [66.5 kB] Get:58 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-survival 2.36-14-1precise0 [2,591 kB] Get:59 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-rpart 4.1-0-1precise0 [876 kB] Get:60 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-cran-spatial 7.3-4-1precise0 [106 kB] Get:61 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-doc-html 2.15.2-1precise0 [641 kB] Get:62 http://cran.fhcrc.org/bin/linux/ubuntu/ precise/ r-recommended 2.15.2-1precise0 [2,680 B] Fetched 61.0 MB in 2min 6s (481 kB/s) Extracting templates from packages: 100% Preconfiguring packages ... Selecting previously unselected package libunistring0. (Reading database ... 134528 files and directories currently installed.) Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package libpcrecpp0. Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_amd64.deb) ... Selecting previously unselected package autoconf. Unpacking autoconf (from .../autoconf_2.68-1ubuntu2_all.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20120210.1ubuntu1_all.deb) ... Selecting previously unselected package automake. Unpacking automake (from .../automake_1%3a1.11.3-1ubuntu2_all.deb) ... Selecting previously unselected package libstdc++6-4.6-dev. Unpacking libstdc++6-4.6-dev (from .../libstdc++6-4.6-dev_4.6.3-1ubuntu5_amd64.deb) ... Selecting previously unselected package g++-4.6. Unpacking g++-4.6 (from .../g++-4.6_4.6.3-1ubuntu5_amd64.deb) ... Selecting previously unselected package g++. Unpacking g++ (from .../g++_4%3a4.6.3-1ubuntu5_amd64.deb) ... Selecting previously unselected package libdpkg-perl. Unpacking libdpkg-perl (from .../libdpkg-perl_1.16.1.2ubuntu7.1_all.deb) ... Selecting previously unselected package dpkg-dev. Unpacking dpkg-dev (from .../dpkg-dev_1.16.1.2ubuntu7.1_all.deb) ... Selecting previously unselected package build-essential. Unpacking build-essential (from .../build-essential_11.5ubuntu2.1_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3.7_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120115ubuntu3_all.deb) ... Selecting previously unselected package intltool. Unpacking intltool (from .../intltool_0.50.2-2_all.deb) ... Selecting previously unselected package dh-translations. Unpacking dh-translations (from .../dh-translations_116_all.deb) ... Selecting previously unselected package python-scour. Unpacking python-scour (from .../python-scour_0.26-3_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.100ubuntu2_all.deb) ... Selecting previously unselected package fakeroot. Unpacking fakeroot (from .../fakeroot_1.18.2-1_amd64.deb) ... Selecting previously unselected package libalgorithm-diff-perl. Unpacking libalgorithm-diff-perl (from .../libalgorithm-diff-perl_1.19.02-2_all.deb) ... Selecting previously unselected package libalgorithm-diff-xs-perl. Unpacking libalgorithm-diff-xs-perl (from .../libalgorithm-diff-xs-perl_0.04-2build2_amd64.deb) ... Selecting previously unselected package libalgorithm-merge-perl. Unpacking libalgorithm-merge-perl (from .../libalgorithm-merge-perl_0.08-2_all.deb) ... Selecting previously unselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2.20110419-2ubuntu1_amd64.deb) ... Selecting previously unselected package libblas-dev. Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-2ubuntu1_amd64.deb) ... Selecting previously unselected package libbz2-dev. Unpacking libbz2-dev (from .../libbz2-dev_1.0.6-1_amd64.deb) ... Selecting previously unselected package libjpeg-turbo8-dev. 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Unpacking libtinfo-dev (from .../libtinfo-dev_5.9-4_amd64.deb) ... Selecting previously unselected package libncurses5-dev. Unpacking libncurses5-dev (from .../libncurses5-dev_5.9-4_amd64.deb) ... Selecting previously unselected package libpcre3-dev. Unpacking libpcre3-dev (from .../libpcre3-dev_8.12-4_amd64.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_amd64.deb) ... Selecting previously unselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.46-3ubuntu4_amd64.deb) ... Selecting previously unselected package libreadline6-dev. Unpacking libreadline6-dev (from .../libreadline6-dev_6.2-8_amd64.deb) ... Selecting previously unselected package libreadline-dev. Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_amd64.deb) ... Selecting previously unselected package tk8.5. Unpacking tk8.5 (from .../tk8.5_8.5.11-1_amd64.deb) ... Selecting previously unselected package r-base-core. Unpacking r-base-core (from .../r-base-core_2.15.2-1precise0_amd64.deb) ... Selecting previously unselected package r-base-dev. Unpacking r-base-dev (from .../r-base-dev_2.15.2-1precise0_all.deb) ... Selecting previously unselected package r-cran-boot. Unpacking r-cran-boot (from .../r-cran-boot_1.3-7-1precise0_all.deb) ... Selecting previously unselected package r-cran-mass. Unpacking r-cran-mass (from .../r-cran-mass_7.3-23-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-class. Unpacking r-cran-class (from .../r-cran-class_7.3-5-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-cluster. Unpacking r-cran-cluster (from .../r-cran-cluster_1.14.3-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-codetools. Unpacking r-cran-codetools (from .../r-cran-codetools_0.2-8-1precise0_all.deb) ... Selecting previously unselected package r-cran-foreign. Unpacking r-cran-foreign (from .../r-cran-foreign_0.8.52-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-kernsmooth. Unpacking r-cran-kernsmooth (from .../r-cran-kernsmooth_2.23-8-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-lattice. Unpacking r-cran-lattice (from .../r-cran-lattice_0.20-13-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-matrix. Unpacking r-cran-matrix (from .../r-cran-matrix_1.0-11-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-nlme. Unpacking r-cran-nlme (from .../r-cran-nlme_3.1.108-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-mgcv. Unpacking r-cran-mgcv (from .../r-cran-mgcv_1.7-22-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-nnet. Unpacking r-cran-nnet (from .../r-cran-nnet_7.3-5-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-survival. Unpacking r-cran-survival (from .../r-cran-survival_2.36-14-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-rpart. Unpacking r-cran-rpart (from .../r-cran-rpart_4.1-0-1precise0_amd64.deb) ... Selecting previously unselected package r-cran-spatial. Unpacking r-cran-spatial (from .../r-cran-spatial_7.3-4-1precise0_amd64.deb) ... Selecting previously unselected package r-doc-html. Unpacking r-doc-html (from .../r-doc-html_2.15.2-1precise0_all.deb) ... Selecting previously unselected package r-recommended. Unpacking r-recommended (from .../r-recommended_2.15.2-1precise0_all.deb) ... Processing triggers for man-db ... Processing triggers for doc-base ... Processing 31 changed doc-base files, 9 added doc-base files... Registering documents with scrollkeeper... Processing triggers for install-info ... Processing triggers for desktop-file-utils ... Processing triggers for hicolor-icon-theme ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libpcrecpp0 (8.12-4) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20120210.1ubuntu1) ... Setting up automake (1:1.11.3-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up libdpkg-perl (1.16.1.2ubuntu7.1) ... Setting up dpkg-dev (1.16.1.2ubuntu7.1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3.7) ... Setting up debhelper (9.20120115ubuntu3) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (116) ... Setting up python-scour (0.26-3) ... Setting up cdbs (0.4.100ubuntu2) ... Setting up fakeroot (1.18.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode. 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R-2.15.2/src/library/base/man/diff.Rd R-2.15.2/src/library/base/man/difftime.Rd R-2.15.2/src/library/base/man/dim.Rd R-2.15.2/src/library/base/man/dimnames.Rd R-2.15.2/src/library/base/man/do.call.Rd R-2.15.2/src/library/base/man/double.Rd R-2.15.2/src/library/base/man/dput.Rd R-2.15.2/src/library/base/man/drop.Rd R-2.15.2/src/library/base/man/droplevels.Rd R-2.15.2/src/library/base/man/dump.Rd R-2.15.2/src/library/base/man/duplicated.Rd R-2.15.2/src/library/base/man/dynload.Rd R-2.15.2/src/library/base/man/eapply.Rd R-2.15.2/src/library/base/man/eigen.Rd R-2.15.2/src/library/base/man/encodeString.Rd R-2.15.2/src/library/base/man/Encoding.Rd R-2.15.2/src/library/base/man/environment.Rd R-2.15.2/src/library/base/man/EnvVar.Rd R-2.15.2/src/library/base/man/eval.Rd R-2.15.2/src/library/base/man/exists.Rd R-2.15.2/src/library/base/man/expand.grid.Rd R-2.15.2/src/library/base/man/expression.Rd R-2.15.2/src/library/base/man/Extract.data.frame.Rd R-2.15.2/src/library/base/man/Extract.factor.Rd R-2.15.2/src/library/base/man/Extract.Rd R-2.15.2/src/library/base/man/Extremes.Rd R-2.15.2/src/library/base/man/factor.Rd R-2.15.2/src/library/base/man/file.access.Rd R-2.15.2/src/library/base/man/file.choose.Rd R-2.15.2/src/library/base/man/file.info.Rd R-2.15.2/src/library/base/man/file.path.Rd R-2.15.2/src/library/base/man/file.show.Rd R-2.15.2/src/library/base/man/files.Rd R-2.15.2/src/library/base/man/files2.Rd R-2.15.2/src/library/base/man/find.package.Rd R-2.15.2/src/library/base/man/findInterval.Rd R-2.15.2/src/library/base/man/force.Rd R-2.15.2/src/library/base/man/Foreign-internal.Rd R-2.15.2/src/library/base/man/Foreign.Rd R-2.15.2/src/library/base/man/formals.Rd R-2.15.2/src/library/base/man/format.info.Rd R-2.15.2/src/library/base/man/format.pval.Rd R-2.15.2/src/library/base/man/format.Rd R-2.15.2/src/library/base/man/formatc.Rd R-2.15.2/src/library/base/man/formatDL.Rd R-2.15.2/src/library/base/man/function.Rd R-2.15.2/src/library/base/man/funprog.Rd R-2.15.2/src/library/base/man/gc.Rd R-2.15.2/src/library/base/man/gc.time.Rd R-2.15.2/src/library/base/man/gctorture.Rd R-2.15.2/src/library/base/man/get.Rd R-2.15.2/src/library/base/man/getCallingDLL.Rd R-2.15.2/src/library/base/man/getDLLRegisteredRoutines.Rd R-2.15.2/src/library/base/man/getLoadedDLLs.Rd R-2.15.2/src/library/base/man/getNativeSymbolInfo.Rd R-2.15.2/src/library/base/man/gettext.Rd R-2.15.2/src/library/base/man/getwd.Rd R-2.15.2/src/library/base/man/gl.Rd R-2.15.2/src/library/base/man/grep.Rd R-2.15.2/src/library/base/man/grepRaw.Rd R-2.15.2/src/library/base/man/groupGeneric.Rd R-2.15.2/src/library/base/man/gzcon.Rd R-2.15.2/src/library/base/man/hexmode.Rd R-2.15.2/src/library/base/man/Hyperbolic.Rd R-2.15.2/src/library/base/man/iconv.Rd R-2.15.2/src/library/base/man/icuSetCollate.Rd R-2.15.2/src/library/base/man/identical.Rd R-2.15.2/src/library/base/man/identity.Rd R-2.15.2/src/library/base/man/ifelse.Rd R-2.15.2/src/library/base/man/integer.Rd R-2.15.2/src/library/base/man/interaction.Rd R-2.15.2/src/library/base/man/interactive.Rd R-2.15.2/src/library/base/man/Internal.Rd R-2.15.2/src/library/base/man/InternalMethods.Rd R-2.15.2/src/library/base/man/invisible.Rd R-2.15.2/src/library/base/man/is.finite.Rd R-2.15.2/src/library/base/man/is.function.Rd R-2.15.2/src/library/base/man/is.language.Rd R-2.15.2/src/library/base/man/is.object.Rd R-2.15.2/src/library/base/man/is.recursive.Rd R-2.15.2/src/library/base/man/is.single.Rd R-2.15.2/src/library/base/man/is.unsorted.Rd R-2.15.2/src/library/base/man/ISOdatetime.Rd R-2.15.2/src/library/base/man/isR.Rd R-2.15.2/src/library/base/man/isS4.Rd R-2.15.2/src/library/base/man/isSymmetric.Rd R-2.15.2/src/library/base/man/jitter.Rd R-2.15.2/src/library/base/man/kappa.Rd R-2.15.2/src/library/base/man/kronecker.Rd R-2.15.2/src/library/base/man/l10n_info.Rd R-2.15.2/src/library/base/man/labels.Rd R-2.15.2/src/library/base/man/lapply.Rd 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R-2.15.2/src/library/base/man/rawConnection.Rd R-2.15.2/src/library/base/man/rawConversion.Rd R-2.15.2/src/library/base/man/RdUtils.Rd R-2.15.2/src/library/base/man/readBin.Rd R-2.15.2/src/library/base/man/readChar.Rd R-2.15.2/src/library/base/man/readline.Rd R-2.15.2/src/library/base/man/readLines.Rd R-2.15.2/src/library/base/man/readRDS.Rd R-2.15.2/src/library/base/man/readRenviron.Rd R-2.15.2/src/library/base/man/real.Rd R-2.15.2/src/library/base/man/Recall.Rd R-2.15.2/src/library/base/man/reg.finalizer.Rd R-2.15.2/src/library/base/man/regex.Rd R-2.15.2/src/library/base/man/regmatches.Rd R-2.15.2/src/library/base/man/rep.Rd R-2.15.2/src/library/base/man/replace.Rd R-2.15.2/src/library/base/man/Reserved.Rd R-2.15.2/src/library/base/man/rev.Rd R-2.15.2/src/library/base/man/Rhome.Rd R-2.15.2/src/library/base/man/rle.Rd R-2.15.2/src/library/base/man/rm.Rd R-2.15.2/src/library/base/man/round.POSIXt.Rd R-2.15.2/src/library/base/man/Round.Rd R-2.15.2/src/library/base/man/row.names.Rd R-2.15.2/src/library/base/man/row.Rd R-2.15.2/src/library/base/man/rowsum.Rd R-2.15.2/src/library/base/man/sample.Rd R-2.15.2/src/library/base/man/save.Rd R-2.15.2/src/library/base/man/scale.Rd R-2.15.2/src/library/base/man/scan.Rd R-2.15.2/src/library/base/man/search.Rd R-2.15.2/src/library/base/man/seek.Rd R-2.15.2/src/library/base/man/seq.Date.Rd R-2.15.2/src/library/base/man/seq.POSIXt.Rd R-2.15.2/src/library/base/man/seq.Rd R-2.15.2/src/library/base/man/sequence.Rd R-2.15.2/src/library/base/man/serialize.Rd R-2.15.2/src/library/base/man/sets.Rd R-2.15.2/src/library/base/man/setTimeLimit.Rd R-2.15.2/src/library/base/man/showConnections.Rd R-2.15.2/src/library/base/man/shQuote.Rd R-2.15.2/src/library/base/man/sign.Rd R-2.15.2/src/library/base/man/sink.Rd R-2.15.2/src/library/base/man/slice.index.Rd R-2.15.2/src/library/base/man/slotOp.Rd R-2.15.2/src/library/base/man/socketSelect.Rd R-2.15.2/src/library/base/man/solve.Rd R-2.15.2/src/library/base/man/sort.Rd R-2.15.2/src/library/base/man/source.Rd R-2.15.2/src/library/base/man/Special.Rd R-2.15.2/src/library/base/man/split.Rd R-2.15.2/src/library/base/man/sprintf.Rd R-2.15.2/src/library/base/man/sQuote.Rd R-2.15.2/src/library/base/man/srcfile.Rd R-2.15.2/src/library/base/man/standardGeneric.Rd R-2.15.2/src/library/base/man/Startup.Rd R-2.15.2/src/library/base/man/stop.Rd R-2.15.2/src/library/base/man/stopifnot.Rd R-2.15.2/src/library/base/man/strptime.Rd R-2.15.2/src/library/base/man/strsplit.Rd R-2.15.2/src/library/base/man/strtoi.Rd R-2.15.2/src/library/base/man/strtrim.Rd R-2.15.2/src/library/base/man/structure.Rd R-2.15.2/src/library/base/man/strwrap.Rd R-2.15.2/src/library/base/man/subset.Rd R-2.15.2/src/library/base/man/substitute.Rd R-2.15.2/src/library/base/man/substr.Rd R-2.15.2/src/library/base/man/sum.Rd R-2.15.2/src/library/base/man/summary.Rd R-2.15.2/src/library/base/man/svd.Rd R-2.15.2/src/library/base/man/sweep.Rd R-2.15.2/src/library/base/man/switch.Rd R-2.15.2/src/library/base/man/Syntax.Rd R-2.15.2/src/library/base/man/Sys.getenv.Rd R-2.15.2/src/library/base/man/Sys.getpid.Rd R-2.15.2/src/library/base/man/Sys.glob.Rd R-2.15.2/src/library/base/man/Sys.info.Rd R-2.15.2/src/library/base/man/Sys.localeconv.Rd R-2.15.2/src/library/base/man/sys.parent.Rd R-2.15.2/src/library/base/man/Sys.readlink.Rd R-2.15.2/src/library/base/man/Sys.setenv.Rd R-2.15.2/src/library/base/man/Sys.setFileTime.Rd R-2.15.2/src/library/base/man/Sys.sleep.Rd R-2.15.2/src/library/base/man/sys.source.Rd R-2.15.2/src/library/base/man/Sys.time.Rd R-2.15.2/src/library/base/man/Sys.which.Rd R-2.15.2/src/library/base/man/system.file.Rd R-2.15.2/src/library/base/man/system.Rd R-2.15.2/src/library/base/man/system.time.Rd R-2.15.2/src/library/base/man/system2.Rd R-2.15.2/src/library/base/man/t.Rd R-2.15.2/src/library/base/man/table.Rd R-2.15.2/src/library/base/man/tabulate.Rd R-2.15.2/src/library/base/man/tapply.Rd R-2.15.2/src/library/base/man/taskCallback.Rd 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R-2.15.2/tools/rsync-recommended R-2.15.2/tools/updatefat R-2.15.2/VERSION R-2.15.2/VERSION-NICK xubuntu@xubuntu:~/Downloads$ cd R-2.15.2/ xubuntu@xubuntu:~/Downloads/R-2.15.2$ ./configure --enable-R-shlib checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking for gawk... no checking for mawk... mawk checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... 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(cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking for dlfcn.h... (cached) yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking fpu_control.h usability... yes checking fpu_control.h presence... yes checking for fpu_control.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for strings.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... -std=gnu99 checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of long double... 16 checking size of size_t... 8 checking whether we can compute C Make dependencies... yes, using gcc -std=gnu99 -MM checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes checking for gcc -std=gnu99 option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/local/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc -std=gnu99... -v checking for C libraries of gcc -std=gnu99... -L/usr/local/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc -std=gnu99 agree on int and double... yes checking whether gfortran and gcc -std=gnu99 agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp checking whether we can compute ObjC Make dependencies... no checking whether C runtime needs -D__NO_MATH_INLINES... no checking for xmkmf... no checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rint exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for fseeko... yes checking for ftello... yes checking for matherr... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether utime exists and is declared... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... no checking for clock_gettime in -lrt... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for __setfpucw... no checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for cblas_cdotu_sub in vecLib framework... no checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for X... no configure: error: --with-x=yes (default) and X11 headers/libs are not available xubuntu@xubuntu:~/Downloads/R-2.15.2$ sudo apt-get build-dep r-base Reading package lists... Done Building dependency tree Reading state information... Done The following NEW packages will be installed: ca-certificates-java default-jdk default-jre default-jre-headless java-common libatk-wrapper-java libatk-wrapper-java-jni libcairo-script-interpreter2 libcairo2-dev libexpat1-dev libfontconfig1-dev libfreetype6-dev libgif4 libglib2.0-dev libice-dev liblzma-dev libpango1.0-dev libpixman-1-dev libpthread-stubs0 libpthread-stubs0-dev libsm-dev libtiff4-dev libtiffxx0c2 libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev libxft-dev libxrender-dev libxss-dev libxt-dev luatex mpack openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib preview-latex-style tcl8.5-dev tex-common texi2html texinfo texlive-base texlive-binaries texlive-common texlive-doc-base texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5-dev tzdata-java x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev xvfb 0 upgraded, 68 newly installed, 0 to remove and 25 not upgraded. Need to get 190 MB of archives. After this operation, 532 MB of additional disk space will be used. Do you want to continue [Y/n]? n Abort. xubuntu@xubuntu:~/Downloads/R-2.15.2$ sudo apt-get build-dep r-base Reading package lists... Done Building dependency tree Reading state information... Done The following NEW packages will be installed: ca-certificates-java default-jdk default-jre default-jre-headless java-common libatk-wrapper-java libatk-wrapper-java-jni libcairo-script-interpreter2 libcairo2-dev libexpat1-dev libfontconfig1-dev libfreetype6-dev libgif4 libglib2.0-dev libice-dev liblzma-dev libpango1.0-dev libpixman-1-dev libpthread-stubs0 libpthread-stubs0-dev libsm-dev libtiff4-dev libtiffxx0c2 libx11-dev libxau-dev libxcb-render0-dev libxcb-shm0-dev libxcb1-dev libxdmcp-dev libxext-dev libxft-dev libxrender-dev libxss-dev libxt-dev luatex mpack openjdk-6-jdk openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib preview-latex-style tcl8.5-dev tex-common texi2html texinfo texlive-base texlive-binaries texlive-common texlive-doc-base texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5-dev tzdata-java x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev xvfb 0 upgraded, 68 newly installed, 0 to remove and 25 not upgraded. Need to get 190 MB of archives. After this operation, 532 MB of additional disk space will be used. Do you want to continue [Y/n]? Get:1 http://security.ubuntu.com/ubuntu/ precise-security/main openjdk-6-jre-lib all 6b27-1.12.3-0ubuntu1~12.04 [6,143 kB] Get:2 http://archive.ubuntu.com/ubuntu/ precise/main ca-certificates-java all 20110912ubuntu6 [8,186 B] Get:3 http://archive.ubuntu.com/ubuntu/ precise/main java-common all 0.43ubuntu2 [61.7 kB] Get:4 http://archive.ubuntu.com/ubuntu/ precise/main default-jre-headless amd64 1:1.6-43ubuntu2 [3,336 B] Get:5 http://archive.ubuntu.com/ubuntu/ precise/main libgif4 amd64 4.1.6-9ubuntu1 [31.0 kB] Get:6 http://archive.ubuntu.com/ubuntu/ precise/main default-jre amd64 1:1.6-43ubuntu2 [882 B] Get:7 http://archive.ubuntu.com/ubuntu/ precise/main libatk-wrapper-java all 0.30.4-0ubuntu2 [30.9 kB] Get:8 http://archive.ubuntu.com/ubuntu/ precise/main libatk-wrapper-java-jni amd64 0.30.4-0ubuntu2 [30.5 kB] Get:9 http://archive.ubuntu.com/ubuntu/ precise-updates/main libcairo-script-interpreter2 amd64 1.10.2-6.1ubuntu3 [62.2 kB] Get:10 http://archive.ubuntu.com/ubuntu/ precise/main default-jdk amd64 1:1.6-43ubuntu2 [882 B] Get:11 http://archive.ubuntu.com/ubuntu/ precise-updates/main libfontconfig1-dev amd64 2.8.0-3ubuntu9.1 [661 kB] Get:12 http://archive.ubuntu.com/ubuntu/ precise/main xorg-sgml-doctools all 1:1.10-1 [12.0 kB] Get:13 http://archive.ubuntu.com/ubuntu/ precise/main x11proto-core-dev all 7.0.22-1 [299 kB] Get:14 http://archive.ubuntu.com/ubuntu/ precise/main libxau-dev amd64 1:1.0.6-4 [10.5 kB] Get:15 http://archive.ubuntu.com/ubuntu/ precise/main libxdmcp-dev amd64 1:1.1.0-4 [26.9 kB] Get:16 http://archive.ubuntu.com/ubuntu/ precise/main x11proto-input-dev all 2.1.99.6-1 [133 kB] Get:17 http://archive.ubuntu.com/ubuntu/ precise/main x11proto-kb-dev all 1.0.5-2 [27.6 kB] Get:18 http://archive.ubuntu.com/ubuntu/ precise/main xtrans-dev all 1.2.6-2 [82.9 kB] Get:19 http://archive.ubuntu.com/ubuntu/ precise/main libpthread-stubs0 amd64 0.3-3 [3,258 B] Get:20 http://archive.ubuntu.com/ubuntu/ precise/main libpthread-stubs0-dev amd64 0.3-3 [2,866 B] Get:21 http://archive.ubuntu.com/ubuntu/ precise-updates/main libxcb1-dev amd64 1.8.1-1ubuntu0.1 [82.5 kB] Get:22 http://archive.ubuntu.com/ubuntu/ precise/main libx11-dev amd64 2:1.4.99.1-0ubuntu2 [908 kB] Get:23 http://archive.ubuntu.com/ubuntu/ precise/main x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:24 http://archive.ubuntu.com/ubuntu/ precise/main libxrender-dev amd64 1:0.9.6-2build1 [27.5 kB] Get:25 http://archive.ubuntu.com/ubuntu/ precise/main libice-dev amd64 2:1.0.7-2build1 [133 kB] Get:26 http://archive.ubuntu.com/ubuntu/ precise/main libsm-dev amd64 2:1.2.0-2build1 [89.5 kB] Get:27 http://archive.ubuntu.com/ubuntu/ precise/main libpixman-1-dev amd64 0.24.4-1 [257 kB] Get:28 http://archive.ubuntu.com/ubuntu/ precise-updates/main libxcb-render0-dev amd64 1.8.1-1ubuntu0.1 [21.0 kB] Get:29 http://archive.ubuntu.com/ubuntu/ precise-updates/main libxcb-shm0-dev amd64 1.8.1-1ubuntu0.1 [6,948 B] Get:30 http://archive.ubuntu.com/ubuntu/ precise-updates/main libglib2.0-dev amd64 2.32.3-0ubuntu1 [1,811 kB] Get:31 http://security.ubuntu.com/ubuntu/ precise-security/main tzdata-java all 2012e-0ubuntu0.12.04.1 [140 kB] Get:32 http://security.ubuntu.com/ubuntu/ precise-security/main openjdk-6-jre-headless amd64 6b27-1.12.3-0ubuntu1~12.04 [25.3 MB] Get:33 http://archive.ubuntu.com/ubuntu/ precise-updates/main libcairo2-dev amd64 1.10.2-6.1ubuntu3 [587 kB] Get:34 http://archive.ubuntu.com/ubuntu/ precise/main libxft-dev amd64 2.2.0-3ubuntu2 [55.0 kB] Get:35 http://archive.ubuntu.com/ubuntu/ precise-updates/main libpango1.0-dev amd64 1.30.0-0ubuntu3.1 [493 kB] Get:36 http://archive.ubuntu.com/ubuntu/ precise/main x11proto-xext-dev all 7.2.0-3 [253 kB] Get:37 http://archive.ubuntu.com/ubuntu/ precise/main libxext-dev amd64 2:1.3.0-3build1 [159 kB] Get:38 http://archive.ubuntu.com/ubuntu/ precise/main x11proto-scrnsaver-dev all 1.2.1-2 [23.1 kB] Get:39 http://archive.ubuntu.com/ubuntu/ precise/main libxss-dev amd64 1:1.2.1-2 [12.9 kB] Get:40 http://archive.ubuntu.com/ubuntu/ precise/main libxt-dev amd64 1:1.1.1-2build1 [490 kB] Get:41 http://archive.ubuntu.com/ubuntu/ precise/main luatex amd64 0.70.1-1ubuntu1 [2,458 kB] Get:42 http://archive.ubuntu.com/ubuntu/ precise/universe mpack amd64 1.6-7 [40.6 kB] Get:43 http://archive.ubuntu.com/ubuntu/ precise/main tex-common all 2.10 [709 kB] Get:44 http://archive.ubuntu.com/ubuntu/ precise/main preview-latex-style all 11.86-2ubuntu1 [108 kB] Get:45 http://archive.ubuntu.com/ubuntu/ precise/main tcl8.5-dev amd64 8.5.11-1ubuntu1 [972 kB] Get:46 http://archive.ubuntu.com/ubuntu/ precise/main texi2html all 1.82-1ubuntu1 [401 kB] Get:47 http://archive.ubuntu.com/ubuntu/ precise/main texinfo amd64 4.13a.dfsg.1-8ubuntu2 [460 kB] Get:48 http://archive.ubuntu.com/ubuntu/ precise/main texlive-common all 2009-15 [94.4 kB] Get:49 http://archive.ubuntu.com/ubuntu/ precise/main texlive-doc-base all 2009-2 [1,339 kB] Get:50 http://archive.ubuntu.com/ubuntu/ precise/main texlive-binaries amd64 2009-11ubuntu2 [8,054 kB] Get:51 http://archive.ubuntu.com/ubuntu/ precise/main texlive-base all 2009-15 [14.7 MB] Get:52 http://security.ubuntu.com/ubuntu/ precise-security/main openjdk-6-jre amd64 6b27-1.12.3-0ubuntu1~12.04 [232 kB] Get:53 http://security.ubuntu.com/ubuntu/ precise-security/main libtiffxx0c2 amd64 3.9.5-2ubuntu1.4 [6,536 B] Get:54 http://security.ubuntu.com/ubuntu/ precise-security/main openjdk-6-jdk amd64 6b27-1.12.3-0ubuntu1~12.04 [11.1 MB] Get:55 http://archive.ubuntu.com/ubuntu/ precise/main texlive-extra-utils all 2009-10ubuntu1 [1,576 kB] Get:56 http://archive.ubuntu.com/ubuntu/ precise/main texlive-fonts-extra all 2009-10ubuntu1 [83.5 MB] Get:57 http://security.ubuntu.com/ubuntu/ precise-security/main libexpat1-dev amd64 2.0.1-7.2ubuntu1.1 [216 kB] Get:58 http://security.ubuntu.com/ubuntu/ precise-security/main libfreetype6-dev amd64 2.4.8-1ubuntu2.1 [796 kB] Get:59 http://security.ubuntu.com/ubuntu/ precise-security/main libtiff4-dev amd64 3.9.5-2ubuntu1.4 [279 kB] Get:60 http://archive.ubuntu.com/ubuntu/ precise/main texlive-fonts-recommended all 2009-15 [7,247 kB] Get:61 http://archive.ubuntu.com/ubuntu/ precise/main texlive-generic-recommended all 2009-15 [1,705 kB] Get:62 http://archive.ubuntu.com/ubuntu/ precise/main texlive-latex-base all 2009-15 [1,406 kB] Get:63 http://archive.ubuntu.com/ubuntu/ precise/main texlive-pictures all 2009-15 [856 kB] Get:64 http://archive.ubuntu.com/ubuntu/ precise/main texlive-latex-extra all 2009-10ubuntu1 [4,717 kB] Get:65 http://archive.ubuntu.com/ubuntu/ precise/main texlive-latex-recommended all 2009-15 [6,752 kB] Get:66 http://archive.ubuntu.com/ubuntu/ precise/main tk8.5-dev amd64 8.5.11-1 [920 kB] Get:67 http://archive.ubuntu.com/ubuntu/ precise-updates/main xvfb amd64 2:1.11.4-0ubuntu10.11 [887 kB] Get:68 http://archive.ubuntu.com/ubuntu/ precise/main liblzma-dev amd64 5.1.1alpha+20110809-3 [98.4 kB] Fetched 190 MB in 8min 8s (389 kB/s) Extracting templates from packages: 100% Preconfiguring 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Selecting previously unselected package openjdk-6-jre-lib. (Reading database ... 139228 files and directories currently installed.) Unpacking openjdk-6-jre-lib (from .../openjdk-6-jre-lib_6b27-1.12.3-0ubuntu1~12.04_all.deb) ... Selecting previously unselected package ca-certificates-java. Unpacking ca-certificates-java (from .../ca-certificates-java_20110912ubuntu6_all.deb) ... Selecting previously unselected package tzdata-java. Unpacking tzdata-java (from .../tzdata-java_2012e-0ubuntu0.12.04.1_all.deb) ... Selecting previously unselected package java-common. Unpacking java-common (from .../java-common_0.43ubuntu2_all.deb) ... Selecting previously unselected package openjdk-6-jre-headless. Unpacking openjdk-6-jre-headless (from .../openjdk-6-jre-headless_6b27-1.12.3-0ubuntu1~12.04_amd64.deb) ... Selecting previously unselected package default-jre-headless. Unpacking default-jre-headless (from .../default-jre-headless_1%3a1.6-43ubuntu2_amd64.deb) ... Selecting previously unselected package libgif4. Unpacking libgif4 (from .../libgif4_4.1.6-9ubuntu1_amd64.deb) ... Selecting previously unselected package openjdk-6-jre. Unpacking openjdk-6-jre (from .../openjdk-6-jre_6b27-1.12.3-0ubuntu1~12.04_amd64.deb) ... Selecting previously unselected package default-jre. Unpacking default-jre (from .../default-jre_1%3a1.6-43ubuntu2_amd64.deb) ... Selecting previously unselected package libatk-wrapper-java. Unpacking libatk-wrapper-java (from .../libatk-wrapper-java_0.30.4-0ubuntu2_all.deb) ... Selecting previously unselected package libatk-wrapper-java-jni. Unpacking libatk-wrapper-java-jni (from .../libatk-wrapper-java-jni_0.30.4-0ubuntu2_amd64.deb) ... Selecting previously unselected package libcairo-script-interpreter2. Unpacking libcairo-script-interpreter2 (from .../libcairo-script-interpreter2_1.10.2-6.1ubuntu3_amd64.deb) ... Selecting previously unselected package libtiffxx0c2. 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Selecting previously unselected package texlive-extra-utils. Unpacking texlive-extra-utils (from .../texlive-extra-utils_2009-10ubuntu1_all.deb) ... Selecting previously unselected package texlive-fonts-extra. Unpacking texlive-fonts-extra (from .../texlive-fonts-extra_2009-10ubuntu1_all.deb) ... Selecting previously unselected package texlive-fonts-recommended. Unpacking texlive-fonts-recommended (from .../texlive-fonts-recommended_2009-15_all.deb) ... Selecting previously unselected package texlive-generic-recommended. Unpacking texlive-generic-recommended (from .../texlive-generic-recommended_2009-15_all.deb) ... Selecting previously unselected package texlive-latex-base. Unpacking texlive-latex-base (from .../texlive-latex-base_2009-15_all.deb) ... Selecting previously unselected package texlive-pictures. Unpacking texlive-pictures (from .../texlive-pictures_2009-15_all.deb) ... Selecting previously unselected package texlive-latex-extra. Unpacking texlive-latex-extra (from .../texlive-latex-extra_2009-10ubuntu1_all.deb) ... Selecting previously unselected package texlive-latex-recommended. Unpacking texlive-latex-recommended (from .../texlive-latex-recommended_2009-15_all.deb) ... Selecting previously unselected package tk8.5-dev. Unpacking tk8.5-dev (from .../tk8.5-dev_8.5.11-1_amd64.deb) ... Selecting previously unselected package xvfb. Unpacking xvfb (from .../xvfb_2%3a1.11.4-0ubuntu10.11_amd64.deb) ... Selecting previously unselected package liblzma-dev. Unpacking liblzma-dev (from .../liblzma-dev_5.1.1alpha+20110809-3_amd64.deb) ... Processing triggers for doc-base ... Processing 10 added doc-base files... Registering documents with scrollkeeper... Processing triggers for man-db ... Processing triggers for desktop-file-utils ... Processing triggers for hicolor-icon-theme ... Processing triggers for libglib2.0-0 ... Processing triggers for install-info ... Setting up java-common (0.43ubuntu2) ... Setting up tzdata-java (2012e-0ubuntu0.12.04.1) ... Setting up libgif4 (4.1.6-9ubuntu1) ... Setting up libcairo-script-interpreter2 (1.10.2-6.1ubuntu3) ... Setting up libtiffxx0c2 (3.9.5-2ubuntu1.4) ... Setting up libexpat1-dev (2.0.1-7.2ubuntu1.1) ... Setting up libfreetype6-dev (2.4.8-1ubuntu2.1) ... Setting up libfontconfig1-dev (2.8.0-3ubuntu9.1) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-4) ... Setting up libxdmcp-dev (1:1.1.0-4) ... Setting up x11proto-input-dev (2.1.99.6-1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-3) ... Setting up libpthread-stubs0-dev (0.3-3) ... Setting up libxcb1-dev (1.8.1-1ubuntu0.1) ... Setting up libx11-dev (2:1.4.99.1-0ubuntu2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2build1) ... Setting up libice-dev (2:1.0.7-2build1) ... Setting up libsm-dev (2:1.2.0-2build1) ... Setting up libpixman-1-dev (0.24.4-1) ... Setting up libxcb-render0-dev (1.8.1-1ubuntu0.1) ... Setting up libxcb-shm0-dev (1.8.1-1ubuntu0.1) ... Setting up libglib2.0-dev (2.32.3-0ubuntu1) ... Setting up libcairo2-dev (1.10.2-6.1ubuntu3) ... Setting up libxft-dev (2.2.0-3ubuntu2) ... Setting up libpango1.0-dev (1.30.0-0ubuntu3.1) ... Setting up libtiff4-dev (3.9.5-2ubuntu1.4) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3build1) ... Setting up x11proto-scrnsaver-dev (1.2.1-2) ... Setting up libxss-dev (1:1.2.1-2) ... Setting up libxt-dev (1:1.1.1-2build1) ... Setting up luatex (0.70.1-1ubuntu1) ... texlive-base is not ready, cannot create formats Setting up mpack (1.6-7) ... Setting up tex-common (2.10) ... Creating config file /etc/texmf/texmf.d/05TeXMF.cnf with new version Creating config file /etc/texmf/texmf.d/15Plain.cnf with new version Creating config file /etc/texmf/texmf.d/45TeXinputs.cnf with new version Creating config file /etc/texmf/texmf.d/55Fonts.cnf with new version Creating config file /etc/texmf/texmf.d/65BibTeX.cnf with new version Creating config file /etc/texmf/texmf.d/75DviPS.cnf with new version Creating config file /etc/texmf/texmf.d/80DVIPDFMx.cnf with new version Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version Creating config file /etc/texmf/texmf.cnf with new version Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up preview-latex-style (11.86-2ubuntu1) ... mktexlsr: Updating /usr/local/share/texmf/ls-R... mktexlsr: Updating /var/lib/texmf/ls-R-TEXMFMAIN... mktexlsr: Updating /var/lib/texmf/ls-R-TEXLIVE... mktexlsr: Updating /var/lib/texmf/ls-R... mktexlsr: Done. Setting up tcl8.5-dev (8.5.11-1ubuntu1) ... Setting up texi2html (1.82-1ubuntu1) ... Setting up texinfo (4.13a.dfsg.1-8ubuntu2) ... Running mktexlsr. This may take some time. ... done. Setting up texlive-common (2009-15) ... Setting up texlive-doc-base (2009-2) ... Setting up texlive-binaries (2009-11ubuntu2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode. update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode. mktexlsr: Updating /var/lib/texmf/ls-R-TEXMFMAIN... mktexlsr: Updating /var/lib/texmf/ls-R-TEXLIVE... mktexlsr: Updating /var/lib/texmf/ls-R... mktexlsr: Done. Building format(s) --refresh. This may take some time... done. Setting up tk8.5-dev (8.5.11-1) ... Setting up xvfb (2:1.11.4-0ubuntu10.11) ... Setting up liblzma-dev (5.1.1alpha+20110809-3) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-base (2009-15) ... mktexlsr: Updating /var/lib/texmf/ls-R-TEXLIVE... mktexlsr: Updating /var/lib/texmf/ls-R-TEXMFMAIN... mktexlsr: Updating /var/lib/texmf/ls-R... mktexlsr: Done. Creating config file /etc/texmf/dvips/config/config.ps with new version Creating config file /etc/texmf/tex/generic/config/pdftexconfig.tex with new version Creating config file /etc/texmf/dvipdfmx/dvipdfmx.cfg with new version Creating config file /etc/texmf/xdvi/XDvi with new version Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-base.cnf. This may take some time... done. Processing triggers for tex-common ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-fonts-recommended (2009-15) ... Setting up texlive-generic-recommended (2009-15) ... Setting up texlive-latex-base (2009-15) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Setting up texlive-pictures (2009-15) ... Setting up texlive-extra-utils (2009-10ubuntu1) ... Setting up texlive-fonts-extra (2009-10ubuntu1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2009-10ubuntu1) ... Setting up texlive-latex-recommended (2009-15) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up openjdk-6-jre-headless (6b27-1.12.3-0ubuntu1~12.04) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode. Setting up default-jre-headless (1:1.6-43ubuntu2) ... Setting up openjdk-6-jre (6b27-1.12.3-0ubuntu1~12.04) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode. Setting up default-jre (1:1.6-43ubuntu2) ... Setting up openjdk-6-jdk (6b27-1.12.3-0ubuntu1~12.04) ... update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode. update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode. Setting up default-jdk (1:1.6-43ubuntu2) ... Setting up ca-certificates-java (20110912ubuntu6) ... Adding debian:A-Trust-nQual-03.pem Adding debian:ACEDICOM_Root.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:AddTrust_External_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:CA_Disig.pem Adding debian:CNNIC_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Certigna.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:ComSign_CA.pem Adding debian:ComSign_Secured_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Equifax_Secure_eBusiness_CA_2.pem Adding debian:Firmaprofesional_Root_CA.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:IGC_A.pem Adding debian:Izenpe.com.pem Adding debian:Juur-SK.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:TC_TrustCenter_Universal_CA_III.pem Adding debian:TC_TrustCenter__Germany__Class_2_CA.pem Adding debian:TC_TrustCenter__Germany__Class_3_CA.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:TDC_OCES_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Taiwan_GRCA.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:Thawte_Server_CA.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Wells_Fargo_Root_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:ca.pem Adding debian:cacert.org.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:spi-ca-2003.pem Adding debian:spi-cacert-2008.pem Adding debian:ssl-cert-snakeoil.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem done. Setting up openjdk-6-jre-lib (6b27-1.12.3-0ubuntu1~12.04) ... Setting up libatk-wrapper-java (0.30.4-0ubuntu2) ... Setting up libatk-wrapper-java-jni (0.30.4-0ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place xubuntu@xubuntu:~/Downloads/R-2.15.2$ ./configure --enable-R-shlib checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking for gawk... no checking for mawk... mawk checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for makeinfo... /usr/bin/makeinfo checking whether makeinfo version is at least 4.7... yes checking for ginstall-info... /usr/bin/ginstall-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip checking for bzip2... /bin/bzip2 checking for firefox... /usr/bin/firefox using default browser ... /usr/bin/firefox checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for notangle... false checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking how to run the C preprocessor... gcc -E checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking for Objective C++ compiler... trying some possibilities checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no no working compiler found checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking for dlfcn.h... (cached) yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking fpu_control.h usability... yes checking fpu_control.h presence... yes checking for fpu_control.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for strings.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... -std=gnu99 checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of long double... 16 checking size of size_t... 8 checking whether we can compute C Make dependencies... yes, using gcc -std=gnu99 -MM checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes checking for gcc -std=gnu99 option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/local/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc -std=gnu99... -v checking for C libraries of gcc -std=gnu99... -L/usr/local/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc -std=gnu99 agree on int and double... yes checking whether gfortran and gcc -std=gnu99 agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp checking whether we can compute ObjC Make dependencies... no checking whether C runtime needs -D__NO_MATH_INLINES... no checking for xmkmf... no checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rint exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for fseeko... yes checking for ftello... yes checking for matherr... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether utime exists and is declared... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... no checking for clock_gettime in -lrt... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for __setfpucw... no checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking 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declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking for 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GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... yes checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 2.5, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for shared library run path origin... done checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile.in config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/bzip2/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/pcre/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/extra/xz/Makefile config.status: creating src/extra/zlib/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/modules/vfonts/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tests/Native/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing po-directories commands config.status: creating po/POTFILES config.status: creating po/Makefile config.status: executing stamp-h commands R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -std=gnu99 -g -O2 Fortran 77 compiler: gfortran -g -O2 C++ compiler: g++ -g -O2 Fortran 90/95 compiler: gfortran -g -O2 Obj-C compiler: Interfaces supported: X11, tcltk External libraries: readline, lzma Additional capabilities: PNG, JPEG, TIFF, NLS, cairo Options enabled: shared R library, shared BLAS, R profiling, Java Recommended packages: yes xubuntu@xubuntu:~/Downloads/R-2.15.2$ make make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/m4' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/tools' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/tools' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/doc' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/doc/html' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/doc/html' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/doc/manual' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/doc/manual' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/doc' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/etc' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/etc' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/share' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/share' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/scripts' creating src/scripts/R.fe make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/scripts' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/scripts' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/include' mkdir -p -- ../../include make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/include/R_ext' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/include' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/blas' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/blas' gfortran -fopenmp -fpic -g -O2 -c blas.f -o blas.o gfortran -fopenmp -fpic -g -O2 -c cmplxblas.f -o cmplxblas.o gcc -std=gnu99 -shared -fopenmp -L/usr/local/lib -o libRblas.so blas.o cmplxblas.o -lgfortran -lm -lquadmath # xerbla.o make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/blas' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/blas' mkdir -p -- /home/xubuntu/Downloads/R-2.15.2/lib make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/blas' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/blas' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/bzip2' making blocksort.d from blocksort.c making bzlib.d from bzlib.c making bzcompress.d from bzcompress.c making crctable.d from crctable.c making decompress.d from decompress.c making huffman.d from huffman.c making randtable.d from randtable.c make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/bzip2' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/bzip2' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/bzip2' gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c blocksort.c -o blocksort.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c bzlib.c -o bzlib.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c bzcompress.c -o bzcompress.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c crctable.c -o crctable.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c decompress.c -o decompress.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c huffman.c -o huffman.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c randtable.c -o randtable.o rm -f libbz2.a ar cr libbz2.a blocksort.o bzlib.o bzcompress.o crctable.o decompress.o huffman.o randtable.o ranlib libbz2.a make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/bzip2' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/bzip2' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/pcre' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/pcre' making pcre_chartables.d from pcre_chartables.c making pcre_compile.d from pcre_compile.c making pcre_config.d from pcre_config.c making pcre_exec.d from pcre_exec.c making pcre_fullinfo.d from pcre_fullinfo.c making pcre_get.d from pcre_get.c making pcre_globals.d from pcre_globals.c making pcre_jit_compile.d from pcre_jit_compile.c making pcre_maketables.d from pcre_maketables.c making pcre_newline.d from pcre_newline.c making pcre_ord2utf8.d from pcre_ord2utf8.c making pcre_refcount.d from pcre_refcount.c making pcre_study.d from pcre_study.c making pcre_tables.d from pcre_tables.c making pcre_ucd.d from pcre_ucd.c making pcre_valid_utf8.d from pcre_valid_utf8.c making pcre_version.d from pcre_version.c making pcre_xclass.d from pcre_xclass.c make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/pcre' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/pcre' gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_chartables.c -o pcre_chartables.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_compile.c -o pcre_compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_config.c -o pcre_config.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_exec.c -o pcre_exec.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_fullinfo.c -o pcre_fullinfo.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_get.c -o pcre_get.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_globals.c -o pcre_globals.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_jit_compile.c -o pcre_jit_compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_maketables.c -o pcre_maketables.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_newline.c -o pcre_newline.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_ord2utf8.c -o pcre_ord2utf8.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_refcount.c -o pcre_refcount.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_study.c -o pcre_study.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_tables.c -o pcre_tables.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_ucd.c -o pcre_ucd.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_valid_utf8.c -o pcre_valid_utf8.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_version.c -o pcre_version.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c pcre_xclass.c -o pcre_xclass.o rm -f libpcre.a ar cr libpcre.a pcre_chartables.o pcre_compile.o pcre_config.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_jit_compile.o pcre_maketables.o pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_study.o pcre_tables.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o ranlib libpcre.a make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/pcre' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/pcre' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/zlib' making adler32.d from adler32.c making compress.d from compress.c making crc32.d from crc32.c making deflate.d from deflate.c making infback.d from infback.c making inffast.d from inffast.c making inflate.d from inflate.c making inftrees.d from inftrees.c making trees.d from trees.c making uncompr.d from uncompr.c making zutil.d from zutil.c make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/zlib' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/zlib' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/zlib' gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c adler32.c -o adler32.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c compress.c -o compress.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c crc32.c -o crc32.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c deflate.c -o deflate.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c infback.c -o infback.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c inffast.c -o inffast.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c inflate.c -o inflate.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c inftrees.c -o inftrees.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c trees.c -o trees.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c uncompr.c -o uncompr.o gcc -std=gnu99 -I. -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c zutil.c -o zutil.o rm -f libz.a ar cr libz.a adler32.o compress.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o ranlib libz.a make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/zlib' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/zlib' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/tre' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/tre' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/tre' gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regerror.c -o regerror.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regexec.c -o regexec.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o rm -f libtre.a ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/tre' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra/tre' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/extra' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/appl' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/appl' making bakslv.d from bakslv.c making binning.d from binning.c making cpoly.d from cpoly.c making cumsum.d from cumsum.c making fft.d from fft.c making fmin.d from fmin.c making integrate.d from integrate.c making interv.d from interv.c making lbfgsb.d from lbfgsb.c making machar.d from machar.c making maxcol.d from maxcol.c making pretty.d from pretty.c making rcont.d from rcont.c making rowsum.d from rowsum.c making stem.d from stem.c making strsignif.d from strsignif.c making tabulate.d from tabulate.c making uncmin.d from uncmin.c making zeroin.d from zeroin.c make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/appl' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/appl' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bakslv.c -o bakslv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c binning.c -o binning.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cpoly.c -o cpoly.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cumsum.c -o cumsum.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fft.c -o fft.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fmin.c -o fmin.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c integrate.c -o integrate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c interv.c -o interv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lbfgsb.c -o lbfgsb.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c machar.c -o machar.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c maxcol.c -o maxcol.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pretty.c -o pretty.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rcont.c -o rcont.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rowsum.c -o rowsum.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c stem.c -o stem.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c strsignif.c -o strsignif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c tabulate.c -o tabulate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c uncmin.c -o uncmin.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c zeroin.c -o zeroin.o gfortran -fopenmp -fpic -g -O2 -c ch2inv.f -o ch2inv.o gfortran -fopenmp -fpic -g -O2 -c chol.f -o chol.o gfortran -fopenmp -fpic -g -O2 -c dchdc.f -o dchdc.o gfortran -fopenmp -fpic -g -O2 -c dpbfa.f -o dpbfa.o gfortran -fopenmp -fpic -g -O2 -c dpbsl.f -o dpbsl.o gfortran -fopenmp -fpic -g -O2 -c dpoco.f -o dpoco.o gfortran -fopenmp -fpic -g -O2 -c dpodi.f -o dpodi.o gfortran -fopenmp -fpic -g -O2 -c dpofa.f -o dpofa.o gfortran -fopenmp -fpic -g -O2 -c dposl.f -o dposl.o gfortran -fopenmp -fpic -g -O2 -c dqrdc.f -o dqrdc.o gfortran -fopenmp -fpic -g -O2 -c dqrdc2.f -o dqrdc2.o gfortran -fopenmp -fpic -g -O2 -c dqrls.f -o dqrls.o gfortran -fopenmp -fpic -g -O2 -c dqrsl.f -o dqrsl.o gfortran -fopenmp -fpic -g -O2 -c dqrutl.f -o dqrutl.o gfortran -fopenmp -fpic -g -O2 -c dsvdc.f -o dsvdc.o gfortran -fopenmp -fpic -g -O2 -c dtrco.f -o dtrco.o gfortran -fopenmp -fpic -g -O2 -c dtrsl.f -o dtrsl.o gfortran -fopenmp -fpic -g -O2 -c eigen.f -o eigen.o rm -f libappl.a ar cr libappl.a bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o machar.o maxcol.o pretty.o rcont.o rowsum.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o ranlib libappl.a make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/appl' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/appl' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/nmath' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/nmath' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/nmath' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c df.c -o df.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/nmath' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/nmath' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' config.status: creating src/unix/Makefile make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' making dynload.d from dynload.c making edit.d from edit.c making stubs.d from stubs.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c making Rembedded.d from Rembedded.c make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dynload.c -o dynload.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c edit.c -o edit.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c stubs.c -o stubs.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c system.c -o system.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sys-unix.c -o sys-unix.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sys-std.c -o sys-std.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c X11.c -o X11.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rembedded.c -o Rembedded.o rm -rf libunix.a ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o Rembedded.o ranlib libunix.a make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -DR_HOME='"/home/xubuntu/Downloads/R-2.15.2"' -o Rscript \ ./Rscript.c make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/unix' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' config.status: creating src/main/Makefile make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' making CConverters.d from CConverters.c making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making base.d from base.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cov.d from cov.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making deriv.d from deriv.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making fourier.d from fourier.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making model.d from model.c making names.d from names.c making objects.d from objects.c making optim.d from optim.c making optimize.d from optimize.c making options.d from options.c making par.d from par.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making size.d from size.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making unique.d from unique.c making util.d from util.c making version.d from version.c making vfonts.d from vfonts.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c CConverters.c -o CConverters.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c CommandLineArgs.c -o CommandLineArgs.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rdynload.c -o Rdynload.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Renviron.c -o Renviron.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c RNG.c -o RNG.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c agrep.c -o agrep.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c apply.c -o apply.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c arithmetic.c -o arithmetic.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c array.c -o array.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c attrib.c -o attrib.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c base.c -o base.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bind.c -o bind.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c builtin.c -o builtin.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c character.c -o character.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c coerce.c -o coerce.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c colors.c -o colors.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c complex.c -o complex.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c connections.c -o connections.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c context.c -o context.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cov.c -o cov.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cum.c -o cum.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dcf.c -o dcf.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c datetime.c -o datetime.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c debug.c -o debug.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c deparse.c -o deparse.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c deriv.c -o deriv.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c devices.c -o devices.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dotcode.c -o dotcode.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dounzip.c -o dounzip.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dstruct.c -o dstruct.o dstruct.c: In function ‘isDDName’: dstruct.c:127:8: warning: ignoring return value of ‘strtol’, declared with attribute warn_unused_result [-Wunused-result] gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c duplicate.c -o duplicate.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c engine.c -o engine.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c envir.c -o envir.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c errors.c -o errors.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c eval.c -o eval.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c format.c -o format.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fourier.c -o fourier.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gevents.c -o gevents.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gram.c -o gram.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gram-ex.c -o gram-ex.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gramLatex.c -o gramLatex.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gramRd.c -o gramRd.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c graphics.c -o graphics.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c grep.c -o grep.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c identical.c -o identical.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c inlined.c -o inlined.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c inspect.c -o inspect.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c internet.c -o internet.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c iosupport.c -o iosupport.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lapack.c -o lapack.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c list.c -o list.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c localecharset.c -o localecharset.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c logic.c -o logic.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c main.c -o main.o main.c: In function ‘dummy_ii’: main.c:1548:5: warning: function returns address of local variable [enabled by default] gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c mapply.c -o mapply.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c match.c -o match.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c memory.c -o memory.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c model.c -o model.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c names.c -o names.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c objects.c -o objects.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c optim.c -o optim.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c optimize.c -o optimize.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c options.c -o options.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c par.c -o par.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c paste.c -o paste.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c platform.c -o platform.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plot.c -o plot.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plotmath.c -o plotmath.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c print.c -o print.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c printarray.c -o printarray.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c printvector.c -o printvector.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c printutils.c -o printutils.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qsort.c -o qsort.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c random.c -o random.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c raw.c -o raw.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c registration.c -o registration.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c relop.c -o relop.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rlocale.c -o rlocale.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c saveload.c -o saveload.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c scan.c -o scan.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c seq.c -o seq.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c serialize.c -o serialize.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c size.c -o size.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sort.c -o sort.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c source.c -o source.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c split.c -o split.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sprintf.c -o sprintf.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c startup.c -o startup.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c subassign.c -o subassign.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c subscript.c -o subscript.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c subset.c -o subset.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c summary.c -o summary.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sysutils.c -o sysutils.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c unique.c -o unique.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c util.c -o util.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c version.c -o version.o gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c vfonts.c -o vfonts.o gfortran -fopenmp -fpic -g -O2 -c xxxpr.f -o xxxpr.o gcc -std=gnu99 -shared -fopenmp -L/usr/local/lib -o libR.so CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o gramLatex.o gramRd.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/Rembedded.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a -L../../lib -lRblas -lgfortran -lm -lquadmath -lreadline -llzma -lrt -ldl -lm make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' mkdir -p -- /home/xubuntu/Downloads/R-2.15.2/bin/exec make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rmain.c -o Rmain.o gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR -lRblas make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/main' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c internet.c -o internet.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c sock.c -o sock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -std=gnu99 -shared -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' mkdir -p -- /home/xubuntu/Downloads/R-2.15.2/modules make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/internet' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' making Lapack.d from Lapack.c make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' gfortran -fpic -g -O2 -ffloat-store -c dlamch.f -o dlamch.o gfortran -fopenmp -fpic -g -O2 -c dlapack.f -o dlapack.o gfortran -fopenmp -fpic -g -O2 -c cmplx.f -o cmplx.o gcc -std=gnu99 -shared -fopenmp -L/usr/local/lib -o libRlapack.so dlamch.o dlapack.o cmplx.o -L../../../lib -lRblas -lgfortran -lm -lquadmath make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Lapack.c -o Lapack.o gcc -std=gnu99 -shared -L/usr/local/lib -o lapack.so Lapack.o -L../../../lib -lR -L../../../lib -lRlapack -L../../../lib -lRblas -lgfortran -lm -lquadmath make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' /home/xubuntu/Downloads/R-2.15.2/lib/libRlapack.so is unchanged make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/lapack' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_alab_her.c -o g_alab_her.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_cntrlify.c -o g_cntrlify.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_fontdb.c -o g_fontdb.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_her_glyph.c -o g_her_glyph.o gcc -std=gnu99 -shared -L/usr/local/lib -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -lm make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/vfonts' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' making dataentry.d from dataentry.c making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dataentry.c -o dataentry.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c devX11.c -o devX11.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rotated.c -o rotated.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rbitmap.c -o rbitmap.o gcc -std=gnu99 -shared -L/usr/local/lib -o R_X11.so dataentry.o devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lX11 -lXt -ltiff -ljpeg -lpng -lz -L../../../lib -lR -lm make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules/X11' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/modules' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' mkdir -p -- ../../library make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/profile' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' building package 'base' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' mkdir -p -- ../../../library/base/demo mkdir -p -- ../../../library/base/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' mkdir -p -- ../../../library/tools/R mkdir -p -- ../../../library/tools/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c text.c -o text.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c Rmd5.c -o Rmd5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c md5.c -o md5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c signals.c -o signals.o gcc -std=gnu99 -shared -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R mkdir -p -- ../../../library/compiler/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/compiler' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/compiler' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/compiler' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' byte-compiling package 'base' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tools' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/po mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/utils' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/utils' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/utils' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/po mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devCairo.d from devCairo.c making devNull.d from devNull.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c making init.d from init.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c axis_scales.c -o axis_scales.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c chull.c -o chull.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c devCairo.c -o devCairo.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c devNull.c -o devNull.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c devPicTeX.c -o devPicTeX.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c devPS.c -o devPS.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c devQuartz.c -o devQuartz.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -shared -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devCairo.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o ../../../../src/extra/zlib/libz.a -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' make[8]: `Makedeps' is up to date. make[8]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' make[8]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cairoBM.c -o cairoBM.o gcc -std=gnu99 -shared -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm make[9]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' make[8]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' make[7]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src/cairo' make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grDevices' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R mkdir -p -- ../../../library/graphics/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/graphics' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/graphics' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/graphics' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' mkdir -p -- ../../../library/stats/R mkdir -p -- ../../../library/stats/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making Trunmed.d from Trunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c kmeans.c -o kmeans.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c ansari.c -o ansari.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c bandwidths.c -o bandwidths.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c chisqsim.c -o chisqsim.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c d2x2xk.c -o d2x2xk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c fexact.c -o fexact.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c kendall.c -o kendall.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c ks.c -o ks.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c line.c -o line.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c smooth.c -o smooth.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c prho.c -o prho.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c swilk.c -o swilk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c ksmooth.c -o ksmooth.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c loessc.c -o loessc.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c monoSpl.c -o monoSpl.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c isoreg.c -o isoreg.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c Srunmed.c -o Srunmed.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c Trunmed.c -o Trunmed.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c dblcen.c -o dblcen.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c distance.c -o distance.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c hclust-utils.c -o hclust-utils.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c nls.c -o nls.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c rWishart.c -o rWishart.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c HoltWinters.c -o HoltWinters.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c PPsum.c -o PPsum.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c arima.c -o arima.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c burg.c -o burg.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c filter.c -o filter.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c mAR.c -o mAR.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c pacf.c -o pacf.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c starma.c -o starma.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c port.c -o port.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c family.c -o family.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c sbart.c -o sbart.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c approx.c -o approx.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c loglin.c -o loglin.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c lowess.c -o lowess.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c massdist.c -o massdist.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c splines.c -o splines.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c lm.c -o lm.o gfortran -fvisibility=hidden -fpic -g -O2 -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fpic -g -O2 -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fpic -g -O2 -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fpic -g -O2 -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fpic -g -O2 -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fpic -g -O2 -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fpic -g -O2 -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fpic -g -O2 -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fpic -g -O2 -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fpic -g -O2 -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fpic -g -O2 -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fpic -g -O2 -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fpic -g -O2 -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fpic -g -O2 -c stl.f -o stl.o gfortran -fpic -g -O2 -ffloat-store -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fpic -g -O2 -c lminfl.f -o lminfl.o gcc -std=gnu99 -shared -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/datasets' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/datasets' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' mkdir -p -- ../../../library/methods/R mkdir -p -- ../../../library/methods/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c do_substitute_direct.c -o do_substitute_direct.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slot.c -o slot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c class_support.c -o class_support.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tests.c -o tests.o gcc -std=gnu99 -shared -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/methods' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' mkdir -p -- ../../../library/grid/R mkdir -p -- ../../../library/grid/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gpar.c -o gpar.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c grid.c -o grid.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c just.c -o just.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c layout.c -o layout.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c matrix.c -o matrix.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c state.c -o state.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unit.c -o unit.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c util.c -o util.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c viewport.c -o viewport.o gcc -std=gnu99 -shared -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/grid' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' mkdir -p -- ../../../library/splines/R mkdir -p -- ../../../library/splines/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines/src' making splines.d from splines.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c splines.c -o splines.o gcc -std=gnu99 -shared -L/usr/local/lib -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/splines' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R mkdir -p -- ../../../library/stats4/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats4' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats4' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/stats4' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec mkdir -p -- ../../../library/tcltk/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 -I/usr/local/include -fpic -g -O2 -c tcltk.c -o tcltk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 -I/usr/local/include -fpic -g -O2 -c tcltk_unix.c -o tcltk_unix.o gcc -std=gnu99 -shared -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.5 -L/usr/lib -ltk8.5 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk/src' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk/src' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk/src' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/tcltk' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R mkdir -p -- ../../../library/parallel/po make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' make[5]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rngstream.c -o rngstream.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fork.c -o fork.o fork.c: In function ‘mc_exit’: fork.c:562:7: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] gcc -std=gnu99 -shared -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel/src' make[6]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel/src' make[5]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel/src' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' make[4]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/parallel' make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/tests' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/tests' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/po' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/po' installing translations: mkdir -p -- ../share/locale/da/LC_MESSAGES da mkdir -p -- ../share/locale/en/LC_MESSAGES en mkdir -p -- ../share/locale/en_GB/LC_MESSAGES en_GB mkdir -p -- ../share/locale/es/LC_MESSAGES es mkdir -p -- ../share/locale/fr/LC_MESSAGES fr mkdir -p -- ../share/locale/de/LC_MESSAGES de mkdir -p -- ../share/locale/it/LC_MESSAGES it mkdir -p -- ../share/locale/ja/LC_MESSAGES ja mkdir -p -- ../share/locale/ko/LC_MESSAGES ko mkdir -p -- ../share/locale/nn/LC_MESSAGES nn mkdir -p -- ../share/locale/pl/LC_MESSAGES pl mkdir -p -- ../share/locale/pt_BR/LC_MESSAGES pt_BR mkdir -p -- ../share/locale/ru/LC_MESSAGES ru mkdir -p -- ../share/locale/tr/LC_MESSAGES tr mkdir -p -- ../share/locale/zh_CN/LC_MESSAGES zh_CN mkdir -p -- ../share/locale/zh_TW/LC_MESSAGES zh_TW mkdir -p -- ../share/locale/en@quot/LC_MESSAGES en@quot make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/po' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/po' you should 'make docs' now ... make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/doc' creating NEWS creating NEWS.pdf make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/doc/html' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/doc/html' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/doc/manual' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/doc' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' installing parsed Rd make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' building/updating package metadata ... make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' writing package indices make[3]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[3]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/Recommended' make[2]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library/Recommended' begin installing recommended package MASS * installing *source* package ‘MASS’ ... ** libs make[3]: Entering directory `/tmp/RtmpI8zKeE/R.INSTALL27f814c8a76d/MASS/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c MASS.c -o MASS.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lqs.c -o lqs.o gcc -std=gnu99 -shared -L/usr/local/lib -o MASS.so MASS.o lqs.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpI8zKeE/R.INSTALL27f814c8a76d/MASS/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/MASS/libs ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) begin installing recommended package lattice * installing *source* package ‘lattice’ ... ** package ‘lattice’ successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpvLZvDN/R.INSTALL28173e603974/lattice/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c threeDplot.c -o threeDplot.o gcc -std=gnu99 -shared -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpvLZvDN/R.INSTALL28173e603974/lattice/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/lattice/libs ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) begin installing recommended package Matrix * installing *source* package ‘Matrix’ ... ** libs make[3]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c CHMfactor.c -o CHMfactor.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c Csparse.c -o Csparse.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c TMatrix_as.c -o TMatrix_as.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c Tsparse.c -o Tsparse.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c Mutils.c -o Mutils.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c chm_common.c -o chm_common.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c cs.c -o cs.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c cs_utils.c -o cs_utils.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dense.c -o dense.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dgCMatrix.c -o dgCMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dgTMatrix.c -o dgTMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dgeMatrix.c -o dgeMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dpoMatrix.c -o dpoMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dppMatrix.c -o dppMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dsCMatrix.c -o dsCMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dsyMatrix.c -o dsyMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dspMatrix.c -o dspMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtCMatrix.c -o dtCMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtTMatrix.c -o dtTMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtrMatrix.c -o dtrMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtpMatrix.c -o dtpMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c factorizations.c -o factorizations.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c ldense.c -o ldense.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c lgCMatrix.c -o lgCMatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c sparseQR.c -o sparseQR.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c abIndex.c -o abIndex.o make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[5]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD' ( cd Source ; make clean ) make[5]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD/Source' make[5]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD/Source' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD' ( cd Source ; make clean ) make[5]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD/Source' make[5]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD/Source' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/SuiteSparse_config' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/SuiteSparse_config' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD' ( cd Lib ; make ) make[5]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD/Lib' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_add.c -o cholmod_add.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_band.c -o cholmod_band.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_common.c -o cholmod_common.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_error.c -o cholmod_error.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_check.c -o cholmod_check.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_read.c -o cholmod_read.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_write.c -o cholmod_write.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/CHOLMOD' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD' ( cd Source ; make lib ) make[5]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD/Source' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c colamd_global.c -o colamd_global.o colamd_global.c:22:44: warning: initialization from incompatible pointer type [enabled by default] gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c colamd.c -o colamd.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD/Source' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/COLAMD' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD' ( cd Source ; make lib ) make[5]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD/Source' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_global.c -o amd_i_global.o amd_global.c:81:41: warning: initialization from incompatible pointer type [enabled by default] gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_global.c -o amd_l_global.o amd_global.c:81:41: warning: initialization from incompatible pointer type [enabled by default] ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD/Source' make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/AMD' make[4]: Entering directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/SuiteSparse_config' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -DNTIMER -I/usr/local/include -fpic -g -O2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src/SuiteSparse_config' gcc -std=gnu99 -shared -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/home/xubuntu/Downloads/R-2.15.2/lib -lRlapack -L/home/xubuntu/Downloads/R-2.15.2/lib -lRblas -lgfortran -lm -lquadmath -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmplkR9wS/R.INSTALL28372d7ac660/Matrix/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘image’ from package ‘graphics’ in package ‘Matrix’ Creating a generic function for ‘solve’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘determinant’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘update’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘t’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘as.array’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘head’ from package ‘utils’ in package ‘Matrix’ Creating a generic function for ‘tail’ from package ‘utils’ in package ‘Matrix’ Creating a generic function for ‘drop’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘as.vector’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘mean’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘Matrix’ Creating a generic function for ‘isSymmetric’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘unname’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘chol’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘norm’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rcond’ from ‘base’ in package ‘Matrix’ (from the saved implicit definition) Creating a generic function for ‘rcond’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘all.equal’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diff’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"dsparseMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csr"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.coo"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csc"’: no definition for class “matrix.csc” in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class “matrix.csr” in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class “matrix.coo” in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class “matrix.csc” Creating a generic function for ‘colSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘Matrix’ in method for ‘colSums’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” in method for ‘rowSums’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” in method for ‘colMeans’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” in method for ‘rowMeans’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix” Creating a generic function for ‘zapsmall’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘print’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘summary’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘which’ from package ‘base’ in package ‘Matrix’ in method for ‘coerce’ with signature ‘"graphAM","sparseMatrix"’: no definition for class “graphAM” in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graph","Matrix"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"graphNEL","CsparseMatrix"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"sparseMatrix","graph"’: no definition for class “graph” in method for ‘coerce’ with signature ‘"sparseMatrix","graphNEL"’: no definition for class “graphNEL” in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class “graphNEL” Creating a generic function for ‘format’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.coef’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.resid’ from package ‘base’ in package ‘Matrix’ Creating a generic function for ‘qr.fitted’ from package ‘base’ in package ‘Matrix’ ** help *** installing help indices ** building package indices Loading required package: Matrix ** installing vignettes ‘Comparisons.Rnw’ ‘Design-issues.Rnw’ ‘Intro2Matrix.Rnw’ ‘Introduction.Rnw’ ‘sparseModels.Rnw’ ** testing if installed package can be loaded * DONE (Matrix) begin installing recommended package nlme * installing *source* package ‘nlme’ ... ** libs make[3]: Entering directory `/tmp/RtmpeR4wGl/R.INSTALL2a2e5b01d0cd/nlme/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c corStruct.c -o corStruct.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gnls.c -o gnls.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c matrix.c -o matrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlOptimizer.c -o nlOptimizer.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlme.c -o nlme.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlmefit.c -o nlmefit.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nls.c -o nls.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pdMat.c -o pdMat.o gcc -std=gnu99 -shared -L/usr/local/lib -o nlme.so corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpeR4wGl/R.INSTALL2a2e5b01d0cd/nlme/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/nlme/libs ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) begin installing recommended package survival * installing *source* package ‘survival’ ... ** libs make[3]: Entering directory `/tmp/RtmpkZSkI6/R.INSTALL2a624f996a2c/survival/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agexact.c -o agexact.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agfit3.c -o agfit3.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agfit5.c -o agfit5.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agmart.c -o agmart.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agmart2.c -o agmart2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agscore.c -o agscore.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agsurv3.c -o agsurv3.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agsurv4.c -o agsurv4.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agsurv5.c -o agsurv5.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chinv2.c -o chinv2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chinv3.c -o chinv3.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cholesky2.c -o cholesky2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cholesky3.c -o cholesky3.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chsolve2.c -o chsolve2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chsolve3.c -o chsolve3.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c concordance1.c -o concordance1.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cox_Rcallback.c -o cox_Rcallback.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxcount1.c -o coxcount1.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxdetail.c -o coxdetail.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxexact.c -o coxexact.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxfit2.c -o coxfit2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxfit5.c -o coxfit5.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxfit6.c -o coxfit6.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxmart.c -o coxmart.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxmart2.c -o coxmart2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxph_wtest.c -o coxph_wtest.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxsafe.c -o coxsafe.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxscho.c -o coxscho.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxscore.c -o coxscore.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dmatrix.c -o dmatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c doloop.c -o doloop.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pyears1.c -o pyears1.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pyears2.c -o pyears2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pyears3b.c -o pyears3b.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pystep.c -o pystep.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survConcordance.c -o survConcordance.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survdiff2.c -o survdiff2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survfit4.c -o survfit4.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survpenal.c -o survpenal.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survreg6.c -o survreg6.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survreg7.c -o survreg7.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survregc1.c -o survregc1.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survregc2.c -o survregc2.o gcc -std=gnu99 -shared -L/usr/local/lib -o survival.so agexact.o agfit3.o agfit5.o agmart.o agmart2.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit2.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpkZSkI6/R.INSTALL2a624f996a2c/survival/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/survival/libs ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘timedep.Rnw’ ** testing if installed package can be loaded * DONE (survival) begin installing recommended package boot * installing *source* package ‘boot’ ... ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) begin installing recommended package cluster * installing *source* package ‘cluster’ ... ** libs make[3]: Entering directory `/tmp/RtmpqAm3pI/R.INSTALL2b0f2371df74/cluster/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c clara.c -o clara.o gfortran -fpic -g -O2 -c daisy.f -o daisy.o gfortran -fpic -g -O2 -c dysta.f -o dysta.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fanny.c -o fanny.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fpic -g -O2 -c mona.f -o mona.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pam.c -o pam.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spannel.c -o spannel.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c twins.c -o twins.o gcc -std=gnu99 -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpqAm3pI/R.INSTALL2b0f2371df74/cluster/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/cluster/libs ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) begin installing recommended package codetools * installing *source* package ‘codetools’ ... ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) begin installing recommended package foreign * installing *source* package ‘foreign’ ... ** libs make[3]: Entering directory `/tmp/RtmpQEpspg/R.INSTALL2b593f6c4295/foreign/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_systat.c -o R_systat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rdbfread.c -o Rdbfread.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rdbfwrite.c -o Rdbfwrite.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SASxport.c -o SASxport.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c avl.c -o avl.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dbfopen.c -o dbfopen.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file-handle.c -o file-handle.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c format.c -o format.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c minitab.c -o minitab.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pfm-read.c -o pfm-read.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sfm-read.c -o sfm-read.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spss.c -o spss.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stataread.c -o stataread.o gcc -std=gnu99 -shared -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpQEpspg/R.INSTALL2b593f6c4295/foreign/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) begin installing recommended package KernSmooth * installing *source* package ‘KernSmooth’ ... ** package ‘KernSmooth’ successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpneNl2I/R.INSTALL2b9c39b15c95/KernSmooth/src' gfortran -fpic -g -O2 -c blkest.f -o blkest.o gfortran -fpic -g -O2 -c cp.f -o cp.o gfortran -fpic -g -O2 -c dgedi.f -o dgedi.o gfortran -fpic -g -O2 -c dgefa.f -o dgefa.o gfortran -fpic -g -O2 -c dgesl.f -o dgesl.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fpic -g -O2 -c linbin.f -o linbin.o gfortran -fpic -g -O2 -c linbin2D.f -o linbin2D.o gfortran -fpic -g -O2 -c locpoly.f -o locpoly.o gfortran -fpic -g -O2 -c rlbin.f -o rlbin.o gfortran -fpic -g -O2 -c sdiag.f -o sdiag.o gfortran -fpic -g -O2 -c sstdiag.f -o sstdiag.o gcc -std=gnu99 -shared -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpneNl2I/R.INSTALL2b9c39b15c95/KernSmooth/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) begin installing recommended package rpart * installing *source* package ‘rpart’ ... ** libs make[3]: Entering directory `/tmp/RtmpELLgYS/R.INSTALL2bd94905c74a/rpart/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anova.c -o anova.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anovapred.c -o anovapred.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c branch.c -o branch.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bsplit.c -o bsplit.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c choose_surg.c -o choose_surg.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fix_cp.c -o fix_cp.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c free_tree.c -o free_tree.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gini.c -o gini.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c graycode.c -o graycode.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c insert_split.c -o insert_split.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c make_cp_list.c -o make_cp_list.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c make_cp_table.c -o make_cp_table.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mysort.c -o mysort.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nodesplit.c -o nodesplit.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c partition.c -o partition.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poisson.c -o poisson.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pred_rpart.c -o pred_rpart.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpart.c -o rpart.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpart_callback.c -o rpart_callback.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpartexp2.c -o rpartexp2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpcountup.c -o rpcountup.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpmatrix.c -o rpmatrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rundown.c -o rundown.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rundown2.c -o rundown2.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c s_to_rp.c -o s_to_rp.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c s_xpred.c -o s_xpred.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c surrogate.c -o surrogate.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c usersplit.c -o usersplit.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xval.c -o xval.o gcc -std=gnu99 -shared -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o rpart.o rpart_callback.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o s_to_rp.o s_xpred.o surrogate.o usersplit.o xval.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpELLgYS/R.INSTALL2bd94905c74a/rpart/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/rpart/libs ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (rpart) begin installing recommended package class * installing *source* package ‘class’ ... ** libs make[3]: Entering directory `/tmp/RtmpgPgGfu/R.INSTALL2c4d3b5e936f/class/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c class.c -o class.o gcc -std=gnu99 -shared -L/usr/local/lib -o class.so class.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpgPgGfu/R.INSTALL2c4d3b5e936f/class/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) begin installing recommended package nnet * installing *source* package ‘nnet’ ... ** libs make[3]: Entering directory `/tmp/RtmplMGIFL/R.INSTALL2c69d726613/nnet/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nnet.c -o nnet.o gcc -std=gnu99 -shared -L/usr/local/lib -o nnet.so nnet.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmplMGIFL/R.INSTALL2c69d726613/nnet/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) begin installing recommended package spatial * installing *source* package ‘spatial’ ... ** libs make[3]: Entering directory `/tmp/RtmpPM1XVs/R.INSTALL2c85134b0ef6/spatial/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c krc.c -o krc.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pps.c -o pps.o gcc -std=gnu99 -shared -L/usr/local/lib -o spatial.so init.o krc.o pps.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpPM1XVs/R.INSTALL2c85134b0ef6/spatial/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) begin installing recommended package mgcv * installing *source* package ‘mgcv’ ... ** libs make[3]: Entering directory `/tmp/RtmpaKUjdq/R.INSTALL2ca72c62a88d/mgcv/src' gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gdi.c -o gdi.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c magic.c -o magic.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mat.c -o mat.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrix.c -o matrix.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mgcv.c -o mgcv.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c misc.c -o misc.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c qp.c -o qp.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c soap.c -o soap.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sparse-smooth.c -o sparse-smooth.o gcc -std=gnu99 -I/home/xubuntu/Downloads/R-2.15.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tprs.c -o tprs.o gcc -std=gnu99 -shared -L/usr/local/lib -o mgcv.so gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o qp.o soap.o sparse-smooth.o tprs.o -L/home/xubuntu/Downloads/R-2.15.2/lib -lRlapack -L/home/xubuntu/Downloads/R-2.15.2/lib -lRblas -lgfortran -lm -lquadmath -L/home/xubuntu/Downloads/R-2.15.2/lib -lR make[3]: Leaving directory `/tmp/RtmpaKUjdq/R.INSTALL2ca72c62a88d/mgcv/src' installing to /home/xubuntu/Downloads/R-2.15.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) make[2]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/Recommended' make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library/Recommended' make[1]: Entering directory `/home/xubuntu/Downloads/R-2.15.2/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[1]: Leaving directory `/home/xubuntu/Downloads/R-2.15.2/src/library' xubuntu@xubuntu:~/Downloads/R-2.15.2$ bin/R R version 2.15.2 (2012-10-26) -- "Trick or Treat" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > demo(graphics) demo(graphics) ---- ~~~~~~~~ Type to start : > # Copyright (C) 1997-2009 The R Core Team > > require(datasets) > require(grDevices); require(graphics) > ## Here is some code which illustrates some of the differences between > ## R and S graphics capabilities. Note that colors are generally specified > ## by a character string name (taken from the X11 rgb.txt file) and that line > ## textures are given similarly. The parameter "bg" sets the background > ## parameter for the plot and there is also an "fg" parameter which sets > ## the foreground color. > > > x <- stats::rnorm(50) > opar <- par(bg = "white") > plot(x, ann = FALSE, type = "n") Hit to see next plot: > abline(h = 0, col = gray(.90)) > lines(x, col = "green4", lty = "dotted") > points(x, bg = "limegreen", pch = 21) > title(main = "Simple Use of Color In a Plot", + xlab = "Just a Whisper of a Label", + col.main = "blue", col.lab = gray(.8), + cex.main = 1.2, cex.lab = 1.0, font.main = 4, font.lab = 3) > ## A little color wheel. This code just plots equally spaced hues in > ## a pie chart. If you have a cheap SVGA monitor (like me) you will > ## probably find that numerically equispaced does not mean visually > ## equispaced. On my display at home, these colors tend to cluster at > ## the RGB primaries. On the other hand on the SGI Indy at work the > ## effect is near perfect. > > par(bg = "gray") > pie(rep(1,24), col = rainbow(24), radius = 0.9) Hit to see next plot: > title(main = "A Sample Color Wheel", cex.main = 1.4, font.main = 3) > title(xlab = "(Use this as a test of monitor linearity)", + cex.lab = 0.8, font.lab = 3) > ## We have already confessed to having these. This is just showing off X11 > ## color names (and the example (from the postscript manual) is pretty "cute". > > pie.sales <- c(0.12, 0.3, 0.26, 0.16, 0.04, 0.12) > names(pie.sales) <- c("Blueberry", "Cherry", + "Apple", "Boston Cream", "Other", "Vanilla Cream") > pie(pie.sales, + col = c("purple","violetred1","green3","cornsilk","cyan","white")) Hit to see next plot: > title(main = "January Pie Sales", cex.main = 1.8, font.main = 1) > title(xlab = "(Don't try this at home kids)", cex.lab = 0.8, font.lab = 3) > ## Boxplots: I couldn't resist the capability for filling the "box". > ## The use of color seems like a useful addition, it focuses attention > ## on the central bulk of the data. > > par(bg="cornsilk") > n <- 10 > g <- gl(n, 100, n*100) > x <- rnorm(n*100) + sqrt(as.numeric(g)) > boxplot(split(x,g), col="lavender", notch=TRUE) Hit to see next plot: > title(main="Notched Boxplots", xlab="Group", font.main=4, font.lab=1) > ## An example showing how to fill between curves. > > par(bg="white") > n <- 100 > x <- c(0,cumsum(rnorm(n))) > y <- c(0,cumsum(rnorm(n))) > xx <- c(0:n, n:0) > yy <- c(x, rev(y)) > plot(xx, yy, type="n", xlab="Time", ylab="Distance") Hit to see next plot: > polygon(xx, yy, col="gray") > title("Distance Between Brownian Motions") > ## Colored plot margins, axis labels and titles. You do need to be > ## careful with these kinds of effects. It's easy to go completely > ## over the top and you can end up with your lunch all over the keyboard. > ## On the other hand, my market research clients love it. > > x <- c(0.00, 0.40, 0.86, 0.85, 0.69, 0.48, 0.54, 1.09, 1.11, 1.73, 2.05, 2.02) > par(bg="lightgray") > plot(x, type="n", axes=FALSE, ann=FALSE) Hit to see next plot: > usr <- par("usr") > rect(usr[1], usr[3], usr[2], usr[4], col="cornsilk", border="black") > lines(x, col="blue") > points(x, pch=21, bg="lightcyan", cex=1.25) > axis(2, col.axis="blue", las=1) > axis(1, at=1:12, lab=month.abb, col.axis="blue") > box() > title(main= "The Level of Interest in R", font.main=4, col.main="red") > title(xlab= "1996", col.lab="red") > ## A filled histogram, showing how to change the font used for the > ## main title without changing the other annotation. > > par(bg="cornsilk") > x <- rnorm(1000) > hist(x, xlim=range(-4, 4, x), col="lavender", main="") Hit to see next plot: > title(main="1000 Normal Random Variates", font.main=3) > ## A scatterplot matrix > ## The good old Iris data (yet again) > > pairs(iris[1:4], main="Edgar Anderson's Iris Data", font.main=4, pch=19) Hit to see next plot: > pairs(iris[1:4], main="Edgar Anderson's Iris Data", pch=21, + bg = c("red", "green3", "blue")[unclass(iris$Species)]) Hit to see next plot: > ## Contour plotting > ## This produces a topographic map of one of Auckland's many volcanic "peaks". > > x <- 10*1:nrow(volcano) > y <- 10*1:ncol(volcano) > lev <- pretty(range(volcano), 10) > par(bg = "lightcyan") > pin <- par("pin") > xdelta <- diff(range(x)) > ydelta <- diff(range(y)) > xscale <- pin[1]/xdelta > yscale <- pin[2]/ydelta > scale <- min(xscale, yscale) > xadd <- 0.5*(pin[1]/scale - xdelta) > yadd <- 0.5*(pin[2]/scale - ydelta) > plot(numeric(0), numeric(0), + xlim = range(x)+c(-1,1)*xadd, ylim = range(y)+c(-1,1)*yadd, + type = "n", ann = FALSE) Hit to see next plot: > usr <- par("usr") > rect(usr[1], usr[3], usr[2], usr[4], col="green3") > contour(x, y, volcano, levels = lev, col="yellow", lty="solid", add=TRUE) > box() > title("A Topographic Map of Maunga Whau", font= 4) > title(xlab = "Meters North", ylab = "Meters West", font= 3) > mtext("10 Meter Contour Spacing", side=3, line=0.35, outer=FALSE, + at = mean(par("usr")[1:2]), cex=0.7, font=3) > ## Conditioning plots > > par(bg="cornsilk") > coplot(lat ~ long | depth, data = quakes, pch = 21, bg = "green3") Hit to see next plot: > par(opar) >