Genome: Revision history

26 August 2016

• curprev 20:3220:32, 26 August 2016‎ Brb talk contribs‎ 172,367 bytes +124‎ →‎Filtering strategy
• curprev 20:3020:30, 26 August 2016‎ Brb talk contribs‎ 172,243 bytes +118‎ →‎Filtering strategy
• curprev 20:2820:28, 26 August 2016‎ Brb talk contribs‎ 172,125 bytes +687‎ →‎Filtering strategy
• curprev 20:1120:11, 26 August 2016‎ Brb talk contribs‎ 171,438 bytes +144‎ →‎Filtering strategy
• curprev 16:1816:18, 26 August 2016‎ Brb talk contribs‎ 171,294 bytes +303‎ →‎Filtering strategy
• curprev 16:1616:16, 26 August 2016‎ Brb talk contribs‎ 170,991 bytes +401‎ →‎Filtering strategy

25 August 2016

• curprev 14:1314:13, 25 August 2016‎ Brb talk contribs‎ 170,590 bytes +1,915‎ →‎htslib
• curprev 14:1014:10, 25 August 2016‎ Brb talk contribs‎ 168,675 bytes +638‎ →‎SAMtools
• curprev 12:2212:22, 25 August 2016‎ Brb talk contribs‎ 168,037 bytes +272‎ →‎Single Cell RNA-Seq

20 August 2016

• curprev 16:1916:19, 20 August 2016‎ Brb talk contribs‎ 167,765 bytes +19‎ →‎vcf format
• curprev 16:1816:18, 20 August 2016‎ Brb talk contribs‎ 167,746 bytes +107‎ →‎Count number of records, snps and indels
• curprev 16:1016:10, 20 August 2016‎ Brb talk contribs‎ 167,639 bytes +4‎ →‎vcf format
• curprev 15:5415:54, 20 August 2016‎ Brb talk contribs‎ 167,635 bytes +598‎ →‎vcf format
• curprev 08:1708:17, 20 August 2016‎ Brb talk contribs‎ 167,037 bytes +131‎ →‎FastQC
• curprev 08:1508:15, 20 August 2016‎ Brb talk contribs‎ 166,906 bytes +173‎ →‎Phred quality score and scales
• curprev 08:1008:10, 20 August 2016‎ Brb talk contribs‎ 166,733 bytes +218‎ →‎Phred quality score and scales
• curprev 07:4507:45, 20 August 2016‎ Brb talk contribs‎ 166,515 bytes +484‎ →‎Quality control

17 August 2016

• curprev 08:4008:40, 17 August 2016‎ Brb talk contribs‎ 166,031 bytes +126‎ →‎VariantAnnotation package
• curprev 08:2608:26, 17 August 2016‎ Brb talk contribs‎ 165,905 bytes +433‎ →‎VariantAnnotation package

15 August 2016

• curprev 10:2510:25, 15 August 2016‎ Brb talk contribs‎ 165,472 bytes +198‎ →‎DESeq or edgeR

11 August 2016

• curprev 14:0214:02, 11 August 2016‎ Brb talk contribs‎ 165,274 bytes +48‎ →‎Extract mapped/unmapped reads from BAM
• curprev 13:5913:59, 11 August 2016‎ Brb talk contribs‎ 165,226 bytes +647‎ →‎Extract mapped/unmapped reads from BAM
• curprev 13:5713:57, 11 August 2016‎ Brb talk contribs‎ 164,579 bytes +432‎ →‎Extract mapped/unmapped reads from BAM
• curprev 09:1409:14, 11 August 2016‎ Brb talk contribs‎ 164,147 bytes +229‎ →‎bcftools

9 August 2016

• curprev 14:3614:36, 9 August 2016‎ Brb talk contribs‎ 163,918 bytes +148‎ →‎BWA
• curprev 11:0711:07, 9 August 2016‎ Brb talk contribs‎ 163,770 bytes +49‎ →‎Summary report of a BAM file: samtools flagstat
• curprev 11:0611:06, 9 August 2016‎ Brb talk contribs‎ 163,721 bytes +69‎ →‎Summary report of a BAM file: samtools flagstat

8 August 2016

• curprev 15:3515:35, 8 August 2016‎ Brb talk contribs‎ 163,652 bytes +131‎ →‎BWA
• curprev 15:2715:27, 8 August 2016‎ Brb talk contribs‎ 163,521 bytes +174‎ →‎BWA
• curprev 11:4211:42, 8 August 2016‎ Brb talk contribs‎ 163,347 bytes +754‎ →‎vcf format
• curprev 11:2411:24, 8 August 2016‎ Brb talk contribs‎ 162,593 bytes +89‎ →‎vcf format

7 August 2016

• curprev 20:2820:28, 7 August 2016‎ Brb talk contribs‎ 162,504 bytes +115‎ →‎SAMtools
• curprev 20:2220:22, 7 August 2016‎ Brb talk contribs‎ 162,389 bytes +1,293‎ →‎Convert BAM to FASTQ
• curprev 20:1420:14, 7 August 2016‎ Brb talk contribs‎ 161,096 bytes +1,004‎ →‎Convert BAM to FASTQ
• curprev 19:4819:48, 7 August 2016‎ Brb talk contribs‎ 160,092 bytes +524‎ →‎SAMtools
• curprev 19:3719:37, 7 August 2016‎ Brb talk contribs‎ 159,568 bytes +162‎ →‎SAMtools
• curprev 19:2419:24, 7 August 2016‎ Brb talk contribs‎ 159,406 bytes +21‎ →‎Count number of mapped/unmapped reads from BAM - samtools idxstats
• curprev 19:2219:22, 7 August 2016‎ Brb talk contribs‎ 159,385 bytes +20‎ →‎Count number of mapped/unmapped reads from BAM
• curprev 19:2119:21, 7 August 2016‎ Brb talk contribs‎ 159,365 bytes −208‎ →‎Summary report of a BAM file: samtools flagstat
• curprev 19:2119:21, 7 August 2016‎ Brb talk contribs‎ 159,573 bytes +928‎ →‎Count number of mapped/unmapped reads from BAM
• curprev 19:1419:14, 7 August 2016‎ Brb talk contribs‎ 158,645 bytes +12‎ →‎Summary report of a BAM file
• curprev 19:1119:11, 7 August 2016‎ Brb talk contribs‎ 158,633 bytes +426‎ →‎Extract (uniquely) mapped reads from BAM
• curprev 19:0419:04, 7 August 2016‎ Brb talk contribs‎ 158,207 bytes +14‎ →‎Summary report
• curprev 11:3411:34, 7 August 2016‎ Brb talk contribs‎ 158,193 bytes +313‎ →‎Convert BAM to fastq
• curprev 11:1511:15, 7 August 2016‎ Brb talk contribs‎ 157,880 bytes +142‎ →‎Summary report
• curprev 11:1011:10, 7 August 2016‎ Brb talk contribs‎ 157,738 bytes +1,188‎ →‎BWA
• curprev 07:0407:04, 7 August 2016‎ Brb talk contribs‎ 156,550 bytes +59‎ →‎SAMtools
• curprev 07:0307:03, 7 August 2016‎ Brb talk contribs‎ 156,491 bytes +56‎ →‎SAMtools

6 August 2016

• curprev 22:1122:11, 6 August 2016‎ Brb talk contribs‎ 156,435 bytes +75‎ →‎Alignment and Indexing
• curprev 17:2017:20, 6 August 2016‎ Brb talk contribs‎ 156,360 bytes +33‎ →‎dbSNP file