Bioconductor: Difference between revisions

From 太極
Jump to navigation Jump to search
No edit summary
Line 1: Line 1:
== [https://github.com/Bioconductor-mirror Github Mirrors] ==
== Release News ==
* https://support.bioconductor.org/p/68824/ Announcement
* [http://bioconductor.org/news/bioc_3_7_release/ 3.7] release
* [https://bioconductor.org/news/bioc_3_6_release/ 3.6] release
* [https://bioconductor.org/news/bioc_3_5_release/ 3.5] release
 
== [https://github.com/Bioconductor-mirror Github mirror] ==
* https://support.bioconductor.org/p/68824/ Announcement (Update: it is dead)
 
== Package source ==
* [[R#To_create_Bioconductor_repository|R > create Bioconductor repository]]


== [https://github.com/Shians/BioCExplorer BioCExplorer] ==
== [https://github.com/Shians/BioCExplorer BioCExplorer] ==

Revision as of 11:35, 9 August 2018

Release News

Github mirror

Package source

BioCExplorer

Explore Bioconductor packages more nicely

source("https://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
biocLite("biocViews")
devtools::install_github("seandavi/BiocPkgTools")
devtools::install_github("shians/BioCExplorer")
library(BioCExplorer)
bioc_explore()

BiocExplorer.png

Annotation packages

Gene centric

Genomic centric

Web based

Workflow

Using Bioconductor for Sequence Data

Some packages

Biostrings

library(Biostrings) 
library(BSgenome.Hsapiens.UCSC.hg19) 
vmatchPattern("GCGATCGC", Hsapiens)

plyranges

http://bioconductor.org/packages/devel/bioc/vignettes/plyranges/inst/doc/an-introduction.html

Misc

Package release history

https://support.bioconductor.org/p/69657/

Search the DESCRIPTION file (eg. VariantAnnotation package) in github and the release information can be found there.