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'''Your friend to BRB-ArrayTools.'''
Shortcuts to some pages that may be useful to you!


== FAQs ==
{|
|style="width: 5%; border-width: 0px;"|[[File:Dna microarray45.png|link=Arraytools|BRB-ArrayTools]]||style="width: 20%; border-width: 0px;"|[[Arraytools|BRB-ArrayTools]]||style="width: 5%; border-width: 0px;"|[[File:linux48.png|link=Linux|Linux]]||style="width: 20%; border-width: 0px;"|[[Linux|Linux]]||style="width: 5%; border-width: 0px;"|[[File:R_logo48.png|link=R|R]]||style="width: 20%; border-width: 0px;"|[[R|R]]
|-
|| [[File:tai-chi48.png|link=Tai_Chi|Tai Chi]] || [[Tai_Chi|Tai Chi]] || [[File:heart48.png|link=Health|Health]] || [[Health|Health]] || [[File:raspberry48.png|link=Raspberry|Raspberry Pi]]  || [[Raspberry|Raspberry Pi]]
|-
|| [[File:docker48.png|link=Docker|Docker]]
|| [[Docker|Docker]]
|| [[File:recipe48.png|link=Recipes|Recipes]]
|| [[Recipes|Recipes]]
|| [[File:statistics48.png|link=Statistics|Statistics]]
|| [[Statistics|Statistics]]
|-
|| [[File:ubuntulogo48.png|link=Ubuntu|Ubuntu]]
|| [[Ubuntu|Ubuntu]]
|| [[File:vblogo48.png|link=Virtualbox|Virtualbox]]
|| [[Virtualbox|Virtualbox]]
|| [[File:beaglebone48.png|link=Beaglebone|Beaglebone]]
|| [[Beaglebone|Beaglebone]]
|}


=== What data types does BRB-ArrayTools handle  ===
Expression data, Illumina methylation data, Copy number data (CGH-Tools), RNA-Seq count data processed through Galaxy web tool.
=== What analysis tools do we provide ===
Class comparison for differential expression, class prediction, graphical 2d and 3d interactive plots, gene set analysis, and more.


=== Biological annotations ===
MC Li
Gene ontology, pathways, protein domain, broad msigdb, lymphoid signatures, experimentally verified transcription factor targets, computationally predicted microRNA targets.


=== How to install BRB-ArrayTools if you have 64-bit MS-Office? ===
-----
There is no difference in terms of the installation.
 
=== Out of memory error? ===
 
== Screenshots ==
 
==== [[File:BRB_HeatmapDendrogram.png|100px]] Heatmap and dendrogram generated from the BRCA sample dataset. ====
==== [[File:BRB_3Dplot.png|100px]] 3D scatterplot of samples from running the multidimensional scaling analysis on the BRCA dataset. ====
 
== Other Useful Resources  ==
 
== Support ==

Latest revision as of 19:51, 6 July 2022

Shortcuts to some pages that may be useful to you!

BRB-ArrayTools BRB-ArrayTools Linux Linux R R
Tai Chi Tai Chi Health Health Raspberry Pi Raspberry Pi
Docker Docker Recipes Recipes Statistics Statistics
Ubuntu Ubuntu Virtualbox Virtualbox Beaglebone Beaglebone


MC Li