Genome: Difference between revisions
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* http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/ | * http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/ | ||
* IPA 5.5 manual http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/ipa_help_manual_5.5_v1.pdf | * IPA 5.5 manual http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/ipa_help_manual_5.5_v1.pdf | ||
* [http://ingenuity.force.com/ipa/articles/Tutorial/Tutorials Tutorials] which includes | |||
** Search for genes | |||
** Analysis results | |||
** Upload and analyze example data | |||
** Upload and analyze your own expression data | |||
** Visualize connections among genes | |||
** Learn more special features | |||
** Human isoform view | |||
** Transcription factor analysis | |||
** Downstream effects analysis | |||
Login: | Login: | ||
Revision as of 09:39, 5 March 2013
RNA seq
Other software
dCHIP
Ingenuity
Features:
- easily search the scientific literature
- build dynamic pathway models
- quickly analyze experimental data
- share research and collaborate
- Java based - slow
Entry points
Expression data -> New core analysis -> Functions/Diseases -> Network analysis
Canonical pathways |
| |
Simple or advanced search --------------------+ |
| |
v |
My pathways, Lists <------+
^
|
Creating a custom pathway --------------------+
Resource:
- http://libguides.mit.edu/content.php?pid=14149&sid=843471
- http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/
- IPA 5.5 manual http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/ipa_help_manual_5.5_v1.pdf
- Tutorials which includes
- Search for genes
- Analysis results
- Upload and analyze example data
- Upload and analyze your own expression data
- Visualize connections among genes
- Learn more special features
- Human isoform view
- Transcription factor analysis
- Downstream effects analysis
Login: https://analysis.ingenuity.com/pa/launch.jsp