Genome: Difference between revisions
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== Ingenuity == | == Ingenuity == | ||
Login: | |||
https://analysis.ingenuity.com/pa/launch.jsp. There are web started version and Java applet version. | |||
Features: | Features: | ||
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* quickly analyze experimental data | * quickly analyze experimental data | ||
* share research and collaborate | * share research and collaborate | ||
Entry points | Entry points | ||
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** Transcription factor analysis | ** Transcription factor analysis | ||
** Downstream effects analysis | ** Downstream effects analysis | ||
== [http://david.abcc.ncifcrf.gov/ DAVID Bioinformatics Resource] == | == [http://david.abcc.ncifcrf.gov/ DAVID Bioinformatics Resource] == | ||
Revision as of 09:41, 5 March 2013
RNA seq
Other software
dCHIP
Ingenuity
Login: https://analysis.ingenuity.com/pa/launch.jsp. There are web started version and Java applet version.
Features:
- easily search the scientific literature
- build dynamic pathway models
- quickly analyze experimental data
- share research and collaborate
Entry points
Expression data -> New core analysis -> Functions/Diseases -> Network analysis
Canonical pathways |
| |
Simple or advanced search --------------------+ |
| |
v |
My pathways, Lists <------+
^
|
Creating a custom pathway --------------------+
Resource:
- http://libguides.mit.edu/content.php?pid=14149&sid=843471
- http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/
- IPA 5.5 manual http://people.mbi.ohio-state.edu/baguda/PathwayAnalysis/ipa_help_manual_5.5_v1.pdf
- Tutorials which includes
- Search for genes
- Analysis results
- Upload and analyze example data
- Upload and analyze your own expression data
- Visualize connections among genes
- Learn more special features
- Human isoform view
- Transcription factor analysis
- Downstream effects analysis