Bioconductor: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
Line 1: | Line 1: | ||
== [https://github.com/Bioconductor-mirror Github Mirrors] == | == [https://github.com/Bioconductor-mirror Github Mirrors] == | ||
* https://support.bioconductor.org/p/68824/ Announcement | * https://support.bioconductor.org/p/68824/ Announcement | ||
== [https://github.com/Shians/BioCExplorer BioCExplorer] == | == [https://github.com/Shians/BioCExplorer BioCExplorer] == |
Revision as of 16:38, 5 January 2018
Github Mirrors
- https://support.bioconductor.org/p/68824/ Announcement
BioCExplorer
Explore Bioconductor packages more nicely
source("https://bioconductor.org/biocLite.R") biocLite("BiocUpgrade") biocLite("biocViews") devtools::install_github("seandavi/BiocPkgTools") devtools::install_github("shians/BioCExplorer") library(BioCExplorer) bioc_explore()
Annotation packages
- http://bioconductor.org/help/course-materials/2012/SeattleFeb2012/Annotation.pdf
- https://bioconductor.org/help/course-materials/2017/CSAMA/lectures/1-monday/lecture-04-a-annotation-intro/lecture-04a-annotation-intro.html
- Making and Utilizing TxDb Objects
- Genomic Annotation Resources Introduction to using gene, pathway, gene ontology, homology annotations and the AnnotationHub. Access GO, KEGG, NCBI, Biomart, UCSC, vendor, and other sources.
- AnnotationHub
- OrgDb
- TxDb
- OrganismDb
- BSgenome
- biomaRt
- http://genomicsclass.github.io/book/pages/bioc1_annoCheat.html