Bioconductor: Difference between revisions
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* https://support.bioconductor.org/p/68824/ Announcement | * https://support.bioconductor.org/p/68824/ Announcement | ||
== | == [http://watson.nci.nih.gov/bioc_mirror/ NIH mirror] == | ||
http://watson.nci.nih.gov/bioc_mirror/ | We can safely replace http://www.bioconductor.org/ with http://watson.nci.nih.gov/bioc_mirror/. | ||
For example, the 'Biobase' url in the original and nih mirror can be found in | For example, the 'Biobase' url in the original and nih mirror can be found in | ||
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-> | -> | ||
http://watson.nci.nih.gov/bioc_mirror/packages/release/data/experiment/html/pasilla.html | http://watson.nci.nih.gov/bioc_mirror/packages/release/data/experiment/html/pasilla.html | ||
</pre> | |||
For R software, the NIH mirror is http://watson.nci.nih.gov/cran_mirror. So for example, the R v3.2.1 url in main CRAN and NIH is | |||
<pre> | |||
http://cran.r-project.org/bin/windows/base/R-3.2.1-win.exe | |||
-> | |||
http://watson.nci.nih.gov/cran_mirror/bin/windows/base/R-3.2.1-win.exe | |||
</pre> | |||
and the 'MASS' package is | |||
<pre> | |||
http://cran.r-project.org/web/packages/MASS/index.html | |||
-> | |||
http://watson.nci.nih.gov/cran_mirror/web/packages/MASS/index.html | |||
</pre> | </pre> | ||
Revision as of 11:13, 29 June 2015
Github Mirrors
- https://support.bioconductor.org/p/68824/ Announcement
NIH mirror
We can safely replace http://www.bioconductor.org/ with http://watson.nci.nih.gov/bioc_mirror/.
For example, the 'Biobase' url in the original and nih mirror can be found in
http://www.bioconductor.org/packages/release/bioc/html/Biobase.html -> http://watson.nci.nih.gov/bioc_mirror/packages/release/bioc/html/Biobase.html
and the hgu133plusdb is
http://www.bioconductor.org/packages/release/data/annotation/html/hgu133plus2.db.html -> http://watson.nci.nih.gov/bioc_mirror/packages/release/data/annotation/html/hgu133plus2.db.html
and the experiment data package like pasilla
http://www.bioconductor.org/packages/release/data/experiment/html/pasilla.html -> http://watson.nci.nih.gov/bioc_mirror/packages/release/data/experiment/html/pasilla.html
For R software, the NIH mirror is http://watson.nci.nih.gov/cran_mirror. So for example, the R v3.2.1 url in main CRAN and NIH is
http://cran.r-project.org/bin/windows/base/R-3.2.1-win.exe -> http://watson.nci.nih.gov/cran_mirror/bin/windows/base/R-3.2.1-win.exe
and the 'MASS' package is
http://cran.r-project.org/web/packages/MASS/index.html -> http://watson.nci.nih.gov/cran_mirror/web/packages/MASS/index.html
Annotation packages
http://bioconductor.org/help/course-materials/2012/SeattleFeb2012/Annotation.pdf