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Your friend to BRB-ArrayTools.
Features
Import from multiple data types
Expression data, Illumina methylation data, Copy number data (CGH-Tools), RNA-Seq count data processed through Galaxy web tool.
Sophisticated statistical analysis tools
Class comparison for differential expression, class prediction, graphical 2d and 3d interactive plots, gene set analysis, and more.
Comprehensive biological annotations
Gene ontology, pathways, protein domain, broad msigdb, lymphoid signatures, experimentally verified transcription factor targets, computationally predicted microRNA targets.
Screenshots
Heatmap and dendrogram generated from the BRCA sample dataset.
Interactive 3D scatterplot of samples from running the multidimensional scaling analysis on the Pomeroy dataset.
Interactive 2D scatterplot of samples with gene annotation from a selected gene using right click menu.
Interactive volcano plot from running a class comparison tool.
FAQs
How to install BRB-ArrayTools if you have 64-bit MS-Office?
There is no difference in terms of the installation.
If installation, I can not find the BRB-ArrayTools in Windows > Start > All Programs.
Check EXCEL.
Can I upgrade R?
Better not.
Can I install multiple versions of R?
Yes.
Rserve limitation
See my wiki page of Rserve.
Support
Send an email to [email protected]
Please provide enough information to us so we can understand the problem.
- If a bug report file was generated, be sure to send it to us.
- If the question is like 'what method or parameters should be choose to run my analysis', please consult other experienced people near you.
- Since the software depends on a couple factors like Windows operation system, MS-Office, R. Please provide us more detailed information about the software background including BRB-ArrayTools.