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Revision as of 15:43, 18 October 2012 by Brb (talk | contribs) (→‎FAQ)
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Your friend to BRB-ArrayTools.

FAQs

What data types does BRB-ArrayTools handle

Expression data, Illumina methylation data, Copy number data (CGH-Tools), RNA-Seq count data processed through Galaxy web tool.

What analysis tools do we provide

Class comparison for differential expression, class prediction, graphical 2d and 3d interactive plots, gene set analysis, and more.

Biological annotations

Gene ontology, pathways, protein domain, broad msigdb, lymphoid signatures, experimentally verified transcription factor targets, computationally predicted microRNA targets.

How to install BRB-ArrayTools if you have 64-bit MS-Office?

There is no difference in terms of the installation.

Out of memory error?

Screenshots

BRB HeatmapDendrogram.png Heatmap and dendrogram generated from the BRCA sample dataset.

BRB 3Dplot.png 3D scatterplot of samples from running the multidimensional scaling analysis on the BRCA dataset.

Other Useful Resources

Support