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Your friend to BRB-ArrayTools.

About BRB-ArrayTools

What data types does BRB-ArrayTools handle

Expression data, Illumina methylation data, Copy number data (CGH-Tools), RNA-Seq count data processed through Galaxy web tool.

What analysis tools do we provide

Class comparison for differential expression, class prediction, graphical 2d and 3d interactive plots, gene set analysis, and more.

Biological annotations

Gene ontology, pathways, protein domain, broad msigdb, lymphoid signatures, experimentally verified transcription factor targets, computationally predicted microRNA targets.

Screenshots

BRB HeatmapDendrogram.png Heatmap and dendrogram generated from the BRCA sample dataset.

BRB 3Dplot.png 3D scatterplot of samples from running the multidimensional scaling analysis on the BRCA dataset.

Other Useful Resources

Support

Send an email to [email protected]

Please provide enough information to us so we can understand the problem.

  • If a bug report file was generated, be sure to send it to us.
  • If the question is like 'what method or parameters should be choose to run my analysis', please consult other experienced people near you.
  • Since the software depends on a couple factors like Windows operation system, MS-Office, R. Please provide us more detailed information about the software background including BRB-ArrayTools.

Check BRB-ArrayTools message board [1]