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Your friend to BRB-ArrayTools.

FAQ

What data types does BRB-ArrayTools handle

Expression data, Illumina methylation data, Copy number data (CGH-Tools), RNA-Seq count data processed through Galaxy web tool.

What analysis tools do we provide

Class comparison for differential expression, class prediction, graphical 2d and 3d interactive plots, gene set analysis, and more.

Biological annotations

Gene ontology, pathways, protein domain, broad msigdb, lymphoid signatures, experimentally verified transcription factor targets, computationally predicted microRNA targets.

How to install BRB-ArrayTools if you have 64-bit MS-Office?

There is no difference in terms of the installation.

Screenshots

• Heatmap and dendrogram generated from the BRCA sample dataset.
• 3D scatterplot of samples from running the multidimensional scaling analysis on the BRCA dataset.