Biolinux
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BioLinux
Bio-Linux 7.0 (2012/11/21) screenshot.
Biolinux can be installed in two ways.
- One is to download iso image file. http://nebc.nerc.ac.uk/downloads/
- The other way is to install Bio-linux software/package by using apt-get install method. See http://nebc.nerc.ac.uk/tools/bio-linux/other-bl-docs/package-repository
Check Biolinux version
cat /etc/bio-linux.version # 8.0.5 as of June 2015
Installation
- Latest version iso or ova.
- Command line based on Ubuntu 14.04 or from Biolinux 7.
wget -qO- http://nebc.nerc.ac.uk/downloads/bl8_only/upgrade8.sh | sudo sh
This takes a long long time.
Software list
FAQ
Sample Data
Did not find them useful.
brb@biolinux[brb] ls Desktop/Sample\ Data/ [10:05AM] act cytoscape glimmer3 mrbayes peptide_seqs splitstree artemis dendroscope happy mspcrunch phylip squint blast dotter hmmer multiple_alignment qiime t-coffee blast+ dust jalview mummer rasmol tree-puzzle blixem fasta jprofilegrid muscle rdp_classifier treeview cap3 fastDNAml mesquite mview readseq catchall forester-archaeopteryx mira njplot samtools clustal gap4 mothur nucleotide_seqs sanger_tracefiles brb@biolinux[brb] ls Desktop/Sample\ Data/fasta/ [10:05AM] bovgh.seq hahu.aa mgstm1.e05 mgstm1.nt1r myosin_bp.aa oohu.raa bovprl.seq hsgstm1b.gcg mgstm1.eeq mgstm1.nts n0.aa prio_atepa.aa egmsmg.aa hsgstm1b.seq mgstm1.esq mgstm1.raa n1.aa prot_test.lib grou_drome.pseg humgstd.seq mgstm1.gcg mgstm1.rev n2.aa prot_test.lseg gst.nlib lcbo.aa mgstm1_genclone.seq mgstm1.seq n2_fs.lib qrhuld.aa gst.seq m1r.aa mgstm1.lc mgtt2_x.seq n2s.aa sql gstt1_drome.aa m2.aa mgstm1.nt ms1.aa n2t.aa titin_hum.aa gstt1_pssm.asn1 mchu.aa mgstm1.nt1 mu.lib n_fs.lib titin_hum.seq gtm1_human.aa mgstm1.3nt mgstm1.nt12r musplfm.aa ngt.aa xurt8c.aa gtt1_drome.aa mgstm1.aa mgstm1.nt13 mwkw.aa ngts.aa xurt8c.lc h10_human.aa mgstm1.aaa mgstm1.nt13r mwrtc1.aa oohu.aa xurtg.aa