Genome: Revision history

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curprev 11:1811:18, 1 March 2016‎ Brb talk contribs‎ 110,432 bytes +1‎ →‎VariantToTable tool
curprev 11:1811:18, 1 March 2016‎ Brb talk contribs‎ 110,431 bytes +205‎ →‎vcf format

curprev 20:1120:11, 26 February 2016‎ Brb talk contribs‎ 110,226 bytes +165‎ →‎Single Cell RNA-Seq

curprev 14:0014:00, 25 February 2016‎ Brb talk contribs‎ 110,061 bytes +67‎ →‎Biowulf2 at NIH

curprev 20:1720:17, 23 February 2016‎ Brb talk contribs‎ 109,994 bytes +262‎ →‎RNA seq

curprev 14:2914:29, 18 February 2016‎ Brb talk contribs‎ 109,732 bytes +76‎ →‎Misc

curprev 14:0114:01, 17 February 2016‎ Brb talk contribs‎ 109,656 bytes +108‎ →‎Introduction to Sequence Data Analysis

curprev 12:0512:05, 16 February 2016‎ Brb talk contribs‎ 109,548 bytes +91‎ →‎Introduction to Sequence Data Analysis

curprev 12:2012:20, 12 February 2016‎ Brb talk contribs‎ 109,457 bytes +300‎ →‎Introduction to Sequence Data Analysis
curprev 12:1612:16, 12 February 2016‎ Brb talk contribs‎ 109,157 bytes +212‎ →‎Visualization
curprev 12:1312:13, 12 February 2016‎ Brb talk contribs‎ 108,945 bytes +191‎ →‎Introduction to Sequence Data Analysis
curprev 12:0412:04, 12 February 2016‎ Brb talk contribs‎ 108,754 bytes +136‎ →‎CRAN packages

curprev 20:0620:06, 25 January 2016‎ Brb talk contribs‎ 108,618 bytes +88‎ →‎SAMtools

curprev 11:5311:53, 20 January 2016‎ Brb talk contribs‎ 108,530 bytes +279‎ →‎Terms

curprev 13:0813:08, 19 January 2016‎ Brb talk contribs‎ 108,251 bytes +105‎ →‎Introduction to Sequence Data Analysis

curprev 22:0122:01, 18 December 2015‎ Brb talk contribs‎ 104,545 bytes +155‎ →‎Overview/papers

curprev 17:0417:04, 14 December 2015‎ Brb talk contribs‎ 104,390 bytes +86‎ →‎Variant Annotation
curprev 17:0217:02, 14 December 2015‎ Brb talk contribs‎ 104,304 bytes +49‎ →‎Variant Annotation
curprev 16:5116:51, 14 December 2015‎ Brb talk contribs‎ 104,255 bytes +66‎ →‎Variant Identification

curprev 13:0913:09, 8 December 2015‎ Brb talk contribs‎ 104,189 bytes +421‎ →‎BWA
curprev 12:5312:53, 8 December 2015‎ Brb talk contribs‎ 103,768 bytes +178‎ →‎BWA

curprev 09:3409:34, 20 November 2015‎ Brb talk contribs‎ 103,590 bytes +235‎ →‎DESeq or edgeR

curprev 16:2116:21, 15 November 2015‎ Brb talk contribs‎ 103,355 bytes +102‎ →‎Gene Annotation

curprev 15:1615:16, 10 November 2015‎ Brb talk contribs‎ 100,337 bytes +63‎ →‎freebayes

curprev 17:2517:25, 8 November 2015‎ Brb talk contribs‎ 100,274 bytes +290‎ →‎Locus

curprev 09:2809:28, 29 October 2015‎ Brb talk contribs‎ 99,984 bytes +145‎ →‎bcftools

curprev 16:0016:00, 28 October 2015‎ Brb talk contribs‎ 99,839 bytes +157‎ →‎Normalization
curprev 09:1109:11, 28 October 2015‎ Brb talk contribs‎ 99,682 bytes +130‎ →‎Software

curprev 21:3821:38, 23 October 2015‎ Brb talk contribs‎ 99,552 bytes +147‎ →‎CRAN packages

curprev 10:4510:45, 21 October 2015‎ Brb talk contribs‎ 99,405 bytes +38‎ →‎Software

curprev 15:5515:55, 11 October 2015‎ Brb talk contribs‎ 99,367 bytes +631‎ →‎freebayes

curprev 09:3409:34, 30 September 2015‎ Brb talk contribs‎ 93,528 bytes +15‎ No edit summary
curprev 09:3209:32, 30 September 2015‎ Brb talk contribs‎ 93,513 bytes −51‎ →‎bcftools
curprev 09:3109:31, 30 September 2015‎ Brb talk contribs‎ 93,564 bytes +115‎ →‎bcftools

curprev 16:2216:22, 29 September 2015‎ Brb talk contribs‎ 93,449 bytes +249‎ →‎Terms
curprev 10:4310:43, 29 September 2015‎ Brb talk contribs‎ 93,200 bytes +838‎ →‎Terms

curprev 18:4218:42, 19 September 2015‎ Brb talk contribs‎ 92,362 bytes +232‎ →‎Software

curprev 16:1816:18, 16 September 2015‎ Brb talk contribs‎ 92,130 bytes +56‎ →‎SnpEff & SnpSift
curprev 11:3811:38, 16 September 2015‎ Brb talk contribs‎ 92,074 bytes +65‎ →‎Introduction to Sequence Data Analysis

curprev 13:3613:36, 15 September 2015‎ Brb talk contribs‎ 92,009 bytes +54‎ →‎SnpEff & SnpSift

curprev 13:1013:10, 11 September 2015‎ Brb talk contribs‎ 90,855 bytes +164‎ →‎Misc

curprev 12:3312:33, 9 September 2015‎ Brb talk contribs‎ 90,691 bytes +11‎ →‎Biowulf2 at NIH

curprev 15:4515:45, 8 September 2015‎ Brb talk contribs‎ 90,680 bytes +117‎ →‎STAR (Spliced Transcripts Alignment to a Reference)

curprev 13:1713:17, 31 August 2015‎ Brb talk contribs‎ 90,563 bytes +314‎ →‎BEERS/Grant G.R. 2011
curprev 12:5112:51, 31 August 2015‎ Brb talk contribs‎ 90,249 bytes +98‎ →‎Introduction to Sequence Data Analysis
curprev 12:4212:42, 31 August 2015‎ Brb talk contribs‎ 90,151 bytes +148‎ →‎Alignment

curprev 12:3012:30, 26 August 2015‎ Brb talk contribs‎ 90,003 bytes +28‎ →‎Introduction to Sequence Data Analysis
curprev 12:3012:30, 26 August 2015‎ Brb talk contribs‎ 89,975 bytes +63‎ →‎Introduction to Sequence Data Analysis

curprev 13:1113:11, 24 August 2015‎ Brb talk contribs‎ 89,912 bytes +163‎ →‎Simulate RNA-Seq

curprev 11:5711:57, 21 August 2015‎ Brb talk contribs‎ 89,749 bytes +215‎ →‎Tophat

curprev 16:1216:12, 20 August 2015‎ Brb talk contribs‎ 89,534 bytes +573‎ →‎BEDtools

curprev 23:0223:02, 13 August 2015‎ Brb talk contribs‎ 88,961 bytes +123‎ →‎Software

curprev 10:4110:41, 12 August 2015‎ Brb talk contribs‎ 88,838 bytes +264‎ →‎STAR (Spliced Transcripts Alignment to a Reference)

curprev 16:1416:14, 4 August 2015‎ Brb talk contribs‎ 81,301 bytes +252‎ →‎RPKM (Mortazavi et al. 2008)
curprev 16:0416:04, 4 August 2015‎ Brb talk contribs‎ 81,049 bytes +2,168‎ →‎RPKM (Mortazavi et al. 2008)
curprev 14:5814:58, 4 August 2015‎ Brb talk contribs‎ 78,881 bytes +139‎ →‎Alignment
curprev 14:2814:28, 4 August 2015‎ Brb talk contribs‎ 78,742 bytes +235‎ →‎R and Bioconductor packages

curprev 11:1611:16, 1 August 2015‎ Brb talk contribs‎ 78,507 bytes +152‎ →‎R and Bioconductor packages

curprev 12:0412:04, 30 July 2015‎ Brb talk contribs‎ 78,355 bytes +132‎ →‎Software

curprev 21:2621:26, 27 July 2015‎ Brb talk contribs‎ 78,223 bytes 0‎ →‎CRAN packages
curprev 21:2621:26, 27 July 2015‎ Brb talk contribs‎ 78,223 bytes +236‎ →‎R and Bioconductor packages
curprev 21:2121:21, 27 July 2015‎ Brb talk contribs‎ 77,987 bytes +207‎ →‎Merge different datasets (different genechips)

curprev 14:5314:53, 19 July 2015‎ Brb talk contribs‎ 69,018 bytes +161‎ →‎Alignment

curprev 14:4614:46, 17 July 2015‎ Brb talk contribs‎ 65,693 bytes +94‎ →‎Terms

curprev 14:4314:43, 16 July 2015‎ Brb talk contribs‎ 65,599 bytes +208‎ →‎RNA seq
curprev 14:4014:40, 16 July 2015‎ Brb talk contribs‎ 65,391 bytes +208‎ →‎Monitor Software Version Change

curprev 16:2116:21, 14 July 2015‎ Brb talk contribs‎ 65,183 bytes +787‎ →‎WhopGenome (CRAN)

curprev 21:2621:26, 13 July 2015‎ Brb talk contribs‎ 64,396 bytes +139‎ →‎Labs

curprev 21:0521:05, 12 July 2015‎ Brb talk contribs‎ 64,257 bytes +74‎ →‎RNA-Seq Data Analysis using R/Bioconductor
curprev 21:0521:05, 12 July 2015‎ Brb talk contribs‎ 64,183 bytes +387‎ →‎RNA-Seq Data Analysis using R/Bioconductor

curprev 08:4208:42, 10 July 2015‎ Brb talk contribs‎ 63,796 bytes +246‎ →‎Monitor Software Version Change
curprev 08:3908:39, 10 July 2015‎ Brb talk contribs‎ 63,550 bytes +136‎ →‎RNA-Seq Data Analysis using R/Bioconductor

curprev 11:4811:48, 8 July 2015‎ Brb talk contribs‎ 63,414 bytes +87‎ →‎RNA sequencing 101
curprev 11:1311:13, 8 July 2015‎ Brb talk contribs‎ 63,327 bytes +222‎ No edit summary
curprev 11:0411:04, 8 July 2015‎ Brb talk contribs‎ 63,105 bytes +25‎ →‎RNA sequencing 101
curprev 10:4510:45, 8 July 2015‎ Brb talk contribs‎ 63,080 bytes +162‎ →‎strand-specific vs non-strand specific experiment

curprev 11:2511:25, 7 July 2015‎ Brb talk contribs‎ 62,918 bytes +28‎ →‎Introduction to Sequence Data Analysis Using NIH Biowulf

curprev 18:1518:15, 2 July 2015‎ Brb talk contribs‎ 62,890 bytes +196‎ →‎Single Cell RNA-Seq

curprev 16:1816:18, 29 June 2015‎ Brb talk contribs‎ 57,631 bytes +202‎ →‎Misc

curprev 17:0117:01, 19 June 2015‎ Brb talk contribs‎ 56,107 bytes +573‎ →‎dbSNP

curprev 15:4615:46, 18 June 2015‎ Brb talk contribs‎ 55,534 bytes +127‎ →‎SnpEff & SnpSift
curprev 14:0014:00, 18 June 2015‎ Brb talk contribs‎ 55,407 bytes +50‎ →‎Variant Annotation
curprev 11:4511:45, 18 June 2015‎ Brb talk contribs‎ 55,357 bytes +175‎ →‎vcf format

curprev 12:4112:41, 16 June 2015‎ Brb talk contribs‎ 52,104 bytes +157‎ →‎Software

curprev 14:5814:58, 11 June 2015‎ Brb talk contribs‎ 51,947 bytes +83‎ →‎Software

curprev 13:5713:57, 10 June 2015‎ Brb talk contribs‎ 51,864 bytes +4‎ →‎RNA sequencing 101
curprev 13:5713:57, 10 June 2015‎ Brb talk contribs‎ 51,860 bytes +113‎ →‎RNA sequencing 101
curprev 13:5613:56, 10 June 2015‎ Brb talk contribs‎ 51,747 bytes +122‎ →‎RNA sequencing 101
curprev 13:5513:55, 10 June 2015‎ Brb talk contribs‎ 51,625 bytes +106‎ →‎RNA seq

curprev 11:1411:14, 8 June 2015‎ Brb talk contribs‎ 51,519 bytes −1‎ →‎Variant calling
curprev 11:1211:12, 8 June 2015‎ Brb talk contribs‎ 51,520 bytes +478‎ →‎Variant calling

curprev 09:0909:09, 28 May 2015‎ Brb talk contribs‎ 47,958 bytes +171‎ →‎DESeq or edgeR

curprev 09:3509:35, 8 May 2015‎ Brb talk contribs‎ 46,721 bytes +771‎ →‎flank

curprev 10:5610:56, 4 May 2015‎ Brb talk contribs‎ 45,950 bytes +114‎ →‎RNA sequencing 101
curprev 10:4910:49, 4 May 2015‎ Brb talk contribs‎ 45,836 bytes +173‎ →‎RNA sequencing 101

curprev 23:2523:25, 3 May 2015‎ Brb talk contribs‎ 45,663 bytes +19‎ →‎IRanges
curprev 23:1223:12, 3 May 2015‎ Brb talk contribs‎ 45,644 bytes +2,312‎ →‎IRanges
curprev 10:5110:51, 3 May 2015‎ Brb talk contribs‎ 43,332 bytes +6‎ →‎IRanges
curprev 10:5110:51, 3 May 2015‎ Brb talk contribs‎ 43,326 bytes −2‎ →‎GenomicRanges

curprev 23:4823:48, 2 May 2015‎ Brb talk contribs‎ 43,328 bytes +41‎ →‎IRanges
curprev 23:3723:37, 2 May 2015‎ Brb talk contribs‎ 43,287 bytes +95‎ →‎IRanges
curprev 23:3523:35, 2 May 2015‎ Brb talk contribs‎ 43,192 bytes +463‎ →‎GenomicRanges
curprev 10:4310:43, 2 May 2015‎ Brb talk contribs‎ 42,729 bytes +2,098‎ →‎Counting reads with summarizeOverlaps vignette

curprev 11:2511:25, 1 May 2015‎ Brb talk contribs‎ 40,631 bytes +1,040‎ →‎ShortRead
curprev 11:1011:10, 1 May 2015‎ Brb talk contribs‎ 39,591 bytes +80‎ →‎GenomicAlignments

curprev 15:5015:50, 29 April 2015‎ Brb talk contribs‎ 35,455 bytes +257‎ →‎R and Bioconductor packages

curprev 15:1615:16, 27 April 2015‎ Brb talk contribs‎ 32,571 bytes +145‎ →‎GenomicRanges

curprev 12:4012:40, 19 April 2015‎ Brb talk contribs‎ 30,637 bytes +625‎ →‎R and Bioconductor packages
curprev 12:3012:30, 19 April 2015‎ Brb talk contribs‎ 30,012 bytes +423‎ →‎R and Bioconductor packages
curprev 12:1012:10, 19 April 2015‎ Brb talk contribs‎ 29,589 bytes +229‎ →‎R and Bioconductor packages
curprev 00:2600:26, 19 April 2015‎ Brb talk contribs‎ 29,360 bytes +239‎ →‎R and Bioconductor packages

curprev 23:3223:32, 18 April 2015‎ Brb talk contribs‎ 29,121 bytes +472‎ →‎R and Bioconductor packages

curprev 12:3712:37, 14 April 2015‎ Brb talk contribs‎ 25,745 bytes +216‎ →‎Detect copy number variation (CNV) from the whole exome sequencing
curprev 11:4911:49, 14 April 2015‎ Brb talk contribs‎ 25,529 bytes +534‎ →‎Copy Number
curprev 10:0410:04, 14 April 2015‎ Brb talk contribs‎ 24,995 bytes +160‎ →‎RNA seq

curprev 03:5203:52, 30 March 2015‎ Brb talk contribs‎ 22,270 bytes +86‎ →‎Simulate RNA-Seq
curprev 03:4903:49, 30 March 2015‎ Brb talk contribs‎ 22,184 bytes +142‎ →‎Simulate RNA-Seq
curprev 03:4703:47, 30 March 2015‎ Brb talk contribs‎ 22,042 bytes +55‎ →‎Simulate RNA-Seq
curprev 03:4503:45, 30 March 2015‎ Brb talk contribs‎ 21,987 bytes +336‎ →‎R and Bioconductor packages

curprev 08:5608:56, 26 March 2015‎ Brb talk contribs‎ 21,651 bytes +63‎ →‎DESeq or edgeR
curprev 08:5508:55, 26 March 2015‎ Brb talk contribs‎ 21,588 bytes +87‎ →‎DESeq or edgeR

curprev 16:2516:25, 25 March 2015‎ Brb talk contribs‎ 21,501 bytes +66‎ →‎Rsubread
curprev 16:2216:22, 25 March 2015‎ Brb talk contribs‎ 21,435 bytes +110‎ →‎Rsubread
curprev 16:1716:17, 25 March 2015‎ Brb talk contribs‎ 21,325 bytes +94‎ →‎DESeq or edgeR

curprev 10:3010:30, 17 March 2015‎ Brb talk contribs‎ 21,231 bytes +106‎ →‎Terms

curprev 09:2209:22, 16 March 2015‎ Brb talk contribs‎ 21,125 bytes +124‎ →‎DESeq or edgeR
curprev 09:1809:18, 16 March 2015‎ Brb talk contribs‎ 21,001 bytes +137‎ →‎R and Bioconductor packages
curprev 09:1409:14, 16 March 2015‎ Brb talk contribs‎ 20,864 bytes +596‎ →‎DESeq or edgeR
curprev 09:1209:12, 16 March 2015‎ Brb talk contribs‎ 20,268 bytes +78‎ →‎DESeq or edgeR

curprev 14:3414:34, 11 March 2015‎ Brb talk contribs‎ 20,190 bytes +125‎ →‎Introduction to Sequence Data Analysis Using NIH Biowulf

curprev 11:5011:50, 20 February 2015‎ Brb talk contribs‎ 20,065 bytes +97‎ →‎R and Bioconductor

curprev 13:1213:12, 29 January 2015‎ Brb talk contribs‎ 19,968 bytes +162‎ →‎limma

curprev 13:0013:00, 23 January 2015‎ Brb talk contribs‎ 19,806 bytes +148‎ →‎R and Bioconductor
curprev 12:5812:58, 23 January 2015‎ Brb talk contribs‎ 19,658 bytes +65‎ →‎CummeRbund
curprev 12:5512:55, 23 January 2015‎ Brb talk contribs‎ 19,593 bytes +231‎ →‎R and Bioconductor

curprev 09:0409:04, 15 October 2014‎ Brb talk contribs‎ 19,362 bytes +161‎ →‎Readings
curprev 09:0109:01, 15 October 2014‎ Brb talk contribs‎ 19,201 bytes +283‎ No edit summary

curprev 15:0015:00, 18 April 2014‎ Brb talk contribs‎ 18,918 bytes +131‎ No edit summary

curprev 15:3615:36, 1 April 2014‎ Brb talk contribs‎ 18,787 bytes +154‎ →‎RNA seq

curprev 15:3815:38, 28 October 2013‎ Brb talk contribs‎ 15,906 bytes +127‎ →‎CummeRbund

curprev 14:4314:43, 8 August 2013‎ Brb talk contribs‎ 15,779 bytes +165‎ No edit summary

curprev 10:1810:18, 14 June 2013‎ Brb talk contribs‎ 15,614 bytes +49‎ →‎Other software

curprev 12:4012:40, 25 April 2013‎ Brb talk contribs‎ 15,565 bytes +96‎ →‎dCHIP

curprev 14:1714:17, 21 April 2013‎ Brb talk contribs‎ 15,469 bytes +239‎ →‎DAVID Bioinformatics Resource

curprev 16:1016:10, 8 April 2013‎ Brb talk contribs‎ 15,230 bytes +3‎ →‎Youtube videos
curprev 14:4314:43, 8 April 2013‎ Brb talk contribs‎ 15,227 bytes +122‎ →‎Bowtie

curprev 21:3221:32, 21 March 2013‎ Brb talk contribs‎ 7,540 bytes +185‎ No edit summary

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