Genome: Revision history

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curprev 15:1815:18, 19 March 2023‎ Brb talk contribs‎ 273,113 bytes +246‎ →‎vst over rlog transformation

curprev 11:4311:43, 12 March 2023‎ Brb talk contribs‎ 272,867 bytes +136‎ →‎Protein-protein interaction/PPI

curprev 11:1211:12, 8 March 2023‎ Brb talk contribs‎ 272,731 bytes +359‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 11:1011:10, 8 March 2023‎ Brb talk contribs‎ 272,372 bytes +455‎ →‎Tumor vs normal
curprev 10:5310:53, 8 March 2023‎ Brb talk contribs‎ 271,917 bytes +113‎ →‎TCGAbiolinks
curprev 10:0310:03, 8 March 2023‎ Brb talk contribs‎ 271,804 bytes +1,371‎ →‎Merge different datasets (different genechips)

curprev 09:1909:19, 7 March 2023‎ Brb talk contribs‎ 270,433 bytes +174‎ →‎Proteomics

curprev 15:5415:54, 6 March 2023‎ Brb talk contribs‎ 270,259 bytes +78‎ →‎TCGAbiolinks
curprev 10:1910:19, 6 March 2023‎ Brb talk contribs‎ 270,181 bytes +3,029‎ →‎edgeR vs DESeq2 vs limma

curprev 11:4611:46, 3 March 2023‎ Brb talk contribs‎ 267,152 bytes +54‎ →‎TCGAbiolinks
curprev 10:5710:57, 3 March 2023‎ Brb talk contribs‎ 267,098 bytes +982‎ →‎Tumor purity

curprev 15:5815:58, 27 February 2023‎ Brb talk contribs‎ 266,116 bytes +972‎ →‎Tumor purity

curprev 22:1422:14, 25 February 2023‎ Brb talk contribs‎ 265,144 bytes +111‎ →‎Rsubread

curprev 17:3917:39, 24 February 2023‎ Brb talk contribs‎ 265,033 bytes +758‎ →‎Tumor vs normal
curprev 17:1917:19, 24 February 2023‎ Brb talk contribs‎ 264,275 bytes +1,529‎ →‎Tumor vs normal
curprev 11:1211:12, 24 February 2023‎ Brb talk contribs‎ 262,746 bytes +163‎ →‎cBioPortal, TCGA, PanCanAtlas

curprev 14:1314:13, 23 February 2023‎ Brb talk contribs‎ 262,583 bytes +70‎ →‎easyRNASeq
curprev 14:0114:01, 23 February 2023‎ Brb talk contribs‎ 262,513 bytes +6,199‎ No edit summary
curprev 12:1612:16, 23 February 2023‎ Brb talk contribs‎ 256,314 bytes +1,625‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 11:0911:09, 23 February 2023‎ Brb talk contribs‎ 254,689 bytes +299‎ →‎Expected_count

curprev 16:4216:42, 22 February 2023‎ Brb talk contribs‎ 254,390 bytes +124‎ →‎RNA-Seq workflow

curprev 14:2514:25, 21 February 2023‎ Brb talk contribs‎ 254,266 bytes +340‎ →‎Missense variants

curprev 10:2010:20, 17 February 2023‎ Brb talk contribs‎ 253,926 bytes +110‎ →‎Germline vs Somatic mutation
curprev 10:1210:12, 17 February 2023‎ Brb talk contribs‎ 253,816 bytes +251‎ →‎Germline vs Somatic mutation
curprev 09:5509:55, 17 February 2023‎ Brb talk contribs‎ 253,565 bytes +332‎ →‎Tumor purity

curprev 15:3115:31, 15 February 2023‎ Brb talk contribs‎ 253,233 bytes +159‎ →‎Tumor purity

curprev 16:3716:37, 13 February 2023‎ Brb talk contribs‎ 253,074 bytes +77‎ →‎Genecards
curprev 16:3616:36, 13 February 2023‎ Brb talk contribs‎ 252,997 bytes +702‎ →‎Gene Annotation

curprev 14:5614:56, 10 February 2023‎ Brb talk contribs‎ 252,295 bytes +268‎ →‎Tumor purity
curprev 14:3514:35, 10 February 2023‎ Brb talk contribs‎ 252,027 bytes +225‎ →‎recount2

curprev 14:0614:06, 8 February 2023‎ Brb talk contribs‎ 251,802 bytes +253‎ →‎Reducing false positives in differential analyses of large RNA sequencing data sets

curprev 21:0221:02, 5 February 2023‎ Brb talk contribs‎ 247,023 bytes +85‎ →‎Tumor mutational burden
curprev 21:0021:00, 5 February 2023‎ Brb talk contribs‎ 246,938 bytes +85‎ →‎Tumor mutational burden
curprev 20:5420:54, 5 February 2023‎ Brb talk contribs‎ 246,853 bytes +1,188‎ →‎Tumor mutational burden

curprev 10:5810:58, 31 January 2023‎ Brb talk contribs‎ 245,665 bytes +61‎ →‎gene's isoform
curprev 10:5410:54, 31 January 2023‎ Brb talk contribs‎ 245,604 bytes +193‎ →‎gene's isoform
curprev 10:0710:07, 31 January 2023‎ Brb talk contribs‎ 245,411 bytes +66‎ →‎Tumor purity

curprev 22:3222:32, 28 January 2023‎ Brb talk contribs‎ 245,345 bytes +148‎ →‎Tumor mutational burden

curprev 11:5911:59, 27 January 2023‎ Brb talk contribs‎ 245,197 bytes +141‎ →‎TMM (Robinson and Oshlack, 2010)
curprev 11:5211:52, 27 January 2023‎ Brb talk contribs‎ 245,056 bytes +27‎ →‎CPM vs TPM
curprev 11:4911:49, 27 January 2023‎ Brb talk contribs‎ 245,029 bytes +288‎ →‎RPKM (Mortazavi et al. 2008) and cpm (counts per million)
curprev 11:4411:44, 27 January 2023‎ Brb talk contribs‎ 244,741 bytes +220‎ →‎TMM (Robinson and Oshlack, 2010)

curprev 09:5709:57, 24 January 2023‎ Brb talk contribs‎ 242,899 bytes +2,823‎ →‎Read, fragment
curprev 09:5009:50, 24 January 2023‎ Brb talk contribs‎ 240,076 bytes +1,645‎ →‎What is a read
curprev 09:2809:28, 24 January 2023‎ Brb talk contribs‎ 238,431 bytes +149‎ →‎Rsubread

curprev 14:3514:35, 20 January 2023‎ Brb talk contribs‎ 238,282 bytes +832‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 10:1610:16, 20 January 2023‎ Brb talk contribs‎ 237,450 bytes +783‎ →‎PDX/Xenograft

curprev 17:1217:12, 12 January 2023‎ Brb talk contribs‎ 236,667 bytes +69‎ →‎Tumor mutational burden
curprev 17:0417:04, 12 January 2023‎ Brb talk contribs‎ 236,598 bytes +547‎ →‎Tumor mutational burden
curprev 16:4416:44, 12 January 2023‎ Brb talk contribs‎ 236,051 bytes +166‎ →‎Tumor mutational burden
curprev 16:3616:36, 12 January 2023‎ Brb talk contribs‎ 235,885 bytes +493‎ →‎Tumor mutational burden

curprev 14:2114:21, 10 January 2023‎ Brb talk contribs‎ 225,152 bytes +247‎ →‎Base quality, Mapping quality, Variant quality

curprev 19:1719:17, 8 January 2023‎ Brb talk contribs‎ 224,905 bytes +164‎ →‎Integrate/combine Omics

curprev 15:2015:20, 7 January 2023‎ Brb talk contribs‎ 224,741 bytes +212‎ →‎Z-score transformation
curprev 15:1415:14, 7 January 2023‎ Brb talk contribs‎ 224,529 bytes +262‎ →‎Z-score transformation

curprev 21:2021:20, 5 January 2023‎ Brb talk contribs‎ 224,267 bytes +397‎ →‎DESeq2 experimental design and interpretation

curprev 17:0217:02, 27 December 2022‎ Brb talk contribs‎ 223,870 bytes +116‎ →‎Protein-protein interaction/PPI
curprev 16:5916:59, 27 December 2022‎ Brb talk contribs‎ 223,754 bytes +241‎ →‎PARP inhibitor

curprev 20:3820:38, 19 December 2022‎ Brb talk contribs‎ 223,513 bytes +796‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 13:3413:34, 19 December 2022‎ Brb talk contribs‎ 222,717 bytes +154‎ →‎Protein-protein interaction/PPI

curprev 17:0917:09, 15 December 2022‎ Brb talk contribs‎ 222,563 bytes +72‎ →‎Deconvolve bulk tumor tissue
curprev 17:0817:08, 15 December 2022‎ Brb talk contribs‎ 222,491 bytes +216‎ →‎Integrate RNA-Seq and DNA-Seq

curprev 21:4121:41, 10 November 2022‎ Brb talk contribs‎ 220,426 bytes +171‎ →‎IGV

curprev 15:5815:58, 4 November 2022‎ Brb talk contribs‎ 220,255 bytes +87‎ →‎cBioPortal, TCGA, PanCanAtlas
curprev 15:4915:49, 4 November 2022‎ Brb talk contribs‎ 220,168 bytes +2,056‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 10:5610:56, 4 November 2022‎ Brb talk contribs‎ 218,112 bytes +145‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷
curprev 10:3910:39, 4 November 2022‎ Brb talk contribs‎ 217,967 bytes +139‎ →‎HRD/homologous recombination deficiency 同源重组修复缺陷

curprev 15:3615:36, 31 October 2022‎ Brb talk contribs‎ 217,828 bytes +130‎ →‎UCSC Xena
curprev 10:5110:51, 31 October 2022‎ Brb talk contribs‎ 217,698 bytes +17‎ →‎UCSC Xena
curprev 10:4510:45, 31 October 2022‎ Brb talk contribs‎ 217,681 bytes +109‎ →‎UCSCXenaTools

curprev 12:2612:26, 19 October 2022‎ Brb talk contribs‎ 217,572 bytes +400‎ →‎Protein-protein interaction/PPI
curprev 12:1912:19, 19 October 2022‎ Brb talk contribs‎ 217,172 bytes +1,305‎ →‎Proteomics

curprev 16:2616:26, 12 October 2022‎ Brb talk contribs‎ 215,867 bytes +102‎ →‎Ensembl to gene symbol

curprev 15:1715:17, 23 September 2022‎ Brb talk contribs‎ 215,765 bytes +40‎ →‎RSEM

curprev 13:5913:59, 15 September 2022‎ Brb talk contribs‎ 215,725 bytes +95‎ →‎SOMAscan assay (proteomic)

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