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Below is a list of the most recent file uploads. See the gallery of new files for a more visual overview.
- 17:31, 23 April 2024 Brb talk contribs uploaded File:Polygon.png (<syntaxhighlight lang='r'> plot(c(1, 9), 1:2, type = "n") polygon(1:9, c(2,1,2,1,NA,2,1,2,1), col = c("red", "blue"), border = c("green", "yellow"), lwd = 3, lty = c("dashed", "solid")) </syntaxhighlight>)
- 14:49, 23 April 2024 Brb talk contribs uploaded File:Venn4.png (<syntaxhighlight lang='r'> library(venn) set.seed(12345) x <- list(First = 1:40, Second = 15:60, Third = sample(25:50, 25), Fourth=sample(15:65, 35)) venn(x, ilabels = "counts", zcolor = "style") </syntaxhighlight>)
- 15:53, 17 April 2024 Brb talk contribs uploaded File:Tiv-demo.png
- 20:17, 12 March 2024 Brb talk contribs uploaded File:Filtered R mean.png (Use sample mean instead of variance for each gene as the filter statistic. <syntaxhighlight lang='r'> # Follow the previous code chunks M2 <- rowMeans(exprs(ALL_bcrneg)) theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, M2, p2, theta, method="BH") which.max(R_BH) # 10% <---- so theta=0.1 is the optimal; only 10% genes are removed # 11 max(R_BH) # [1] 270 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.1, lty=2) <...)
- 08:54, 12 March 2024 Brb talk contribs uploaded File:Rainbow v05.png
- 08:53, 12 March 2024 Brb talk contribs uploaded File:Rainbow s05.png
- 08:52, 12 March 2024 Brb talk contribs uploaded File:Rainbow default.png (<syntaxhighlight lang='r'> library(shiny) # Define the UI ui <- fluidPage( titlePanel("Rainbow Color Palette"), sidebarLayout( sidebarPanel( sliderInput("s_value", "Saturation (s):", min = 0, max = 1, value = 1, step = 0.01), sliderInput("v_value", "Value (v):", min = 0, max = 1, value = 1, step = 0.01) ), mainPanel( plotOutput("rainbow_plot") ) ) ) # Define the server server <- function(input, output) { output$rainbow_plot <- renderPlot({ s <-...)
- 21:41, 11 March 2024 Brb talk contribs uploaded File:Filtered R.png (<syntaxhighlight lang='r'> theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, S2, p2, theta, method="BH") which.max(R_BH) # 60% <---- so theta=0.6 is the optimal filtering threshold # 61 max(R_BH) # [1] 380 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.6, lty=2) </syntaxhighlight>)
- 21:35, 11 March 2024 Brb talk contribs uploaded File:Filtered p.png (Note: # x-axis "p cutoff" should be "BH cutoff" or "FDR cutoff". # Each curve represents theta (filtering threshold). For example, theta=.1 means 10% of genes are filtered out before we do multiple testing (or BH adjustment). # It is seen the larger the theta, the more hypotheses are rejected at the same FDR cutoff. For example, #* if theta=0, 251 hypotheses are rejected at FDR=.1 #* if theta=.5, 355 hypotheses are rejected at FDR=.1. <syntaxhighlight lang='r'> BiocManager::install("ALL")...)
- 16:49, 8 March 2024 Brb talk contribs uploaded File:DataOutliers2.png ({{Pre}} puree <- read.csv("https://gist.githubusercontent.com/arraytools/e851ed88c7456779557fbf3ed67b157a/raw/9971c61fea1db99acbd9de17ea82679ba9811358/dataOutliers2.csv", header=F) plot(puree[,1], puree[, 2], xlab="X", ylab="Y") abline(lm(V2 ~ V1, data = puree)) # robust regression require(MASS) summary(rlm(V2 ~ V1, data = puree)) abline(rr.huber <- rlm(V2 ~ V1, data = puree), col = "blue") # quantile regression library(quantreg) abline(rq(V2 ~ V1, data=puree, tau = 0.5), col = "red") # theil...)
- 15:27, 7 March 2024 Brb talk contribs uploaded File:DataOutliers.png ({{Pre}} puree <- read.csv("https://gist.githubusercontent.com/arraytools/47d3a46ae1f9a9cd47db350ae2bd2338/raw/b5cccc8e566ff3bef81b1b371e8bfa174c98ef38/dataOutliers.csv", header = FALSE) plot(puree[,1], puree[, 2], xlim=c(0,1), ylim=c(0,1), xlab="X", ylab="Y") abline(0,1, lty=2) abline(lm(V2 ~ V1, data = puree)) # robust regression require(MASS) summary(rlm(V2 ~ V1, data = puree)) abline(rr.huber <- rlm(V2 ~ V1, data = puree), col = "blue") # almost overlapped with lm() # quantile regressio...)
- 22:41, 10 February 2024 Brb talk contribs uploaded File:R162.png
- 22:53, 8 February 2024 Brb talk contribs uploaded File:Jitterbox.png (<syntaxhighlight lang='r'> nc <- 5 assy <- LETTERS[1:nc] pal <- ggpubr::get_palette("default", nc) set.seed(1) nr <- 5 mat <- matrix(runif(nr*length(assy)), nrow = nr, ncol = length(assy)) set.seed(1) cutoffs <- runif(nc) colnames(mat) <- assy par(mar=c(5,4,1,1)+.1) plot(1, 1, xlim = c(0.5, nc + .5), ylim = c(0,1), type = "n", xlab = "Assay", ylab = "Score", xaxt = 'n') for (i in 1:nc) { rect(i - 0.25, 0, i + 0.25, 1, col = pal[i]) lines(x = c(i - 0.25, i + 0.25), y = c(cutof...)
- 11:25, 19 January 2024 Brb talk contribs uploaded File:RStudioAbort.png
- 20:38, 15 October 2023 Brb talk contribs uploaded File:Geomerrorbarh.png (<syntaxhighlight lang='rsplus'> df <- data.frame( trt = factor(c("Treatment 1", "Treatment 2", "Treatment 3", "Treatment 4", "Treatment 5")), # treatment resp = c(1, 5, 3, 4, 2), # response se = c(0.1, 0.3, 0.3, 0.2, 0.2) # standard error ) # make 'Treatment 1' shown at the top df$trt <- factor(df$trt, levels = c("Treatment 5", "Treatment 4", "Treatment 3", "Treatment 2", "Treatment 1")) p <- ggplot(df, aes(resp, trt)) + geom_point() p + geom_errorbarh(aes(xmax=resp + se, xmin=resp-se),...)
- 17:32, 9 October 2023 Brb talk contribs uploaded File:Calibre.png
- 12:18, 24 August 2023 Brb talk contribs uploaded File:Wheel f400.png
- 12:17, 24 August 2023 Brb talk contribs uploaded File:Wheel f8.png
- 15:59, 22 August 2023 Brb talk contribs uploaded File:Roc asah.png (<pre> par(mfrow=c(1,2)) roc(aSAH$outcome, aSAH$s100b, plot = T) roc(aSAH$outcome2, aSAH$s100b, plot = T) par(mfrow=c(1,1)) </pre>)
- 14:44, 13 August 2023 Brb talk contribs uploaded File:Rotateheatmap.png (<syntaxhighlight lang="rsplus"> library(circlize) set.seed(123) mat = matrix(rnorm(80), 8, 10) rownames(mat) = paste0("R", 1:8) colnames(mat) = paste0("C", 1:10) col_anno = HeatmapAnnotation( df = data.frame(anno1 = 1:10, anno2 = rep(letters[1:3], c(4,3,3))), col = list(anno2 = c("a" = "red", "b" = "blue", "c" = "green"))) row_anno = rowAnnotation( df = data.frame(anno3 = 1:8, anno4 = rep(l...)
- 16:21, 12 August 2023 Brb talk contribs uploaded File:Rotatedend.png
- 16:17, 12 August 2023 Brb talk contribs uploaded File:Dend12.png ({{Pre}} set.seed(123) dat <- matrix(rnorm(20), ncol=2) # perform hierarchical clustering hc <- hclust(dist(dat)) # plot dendrogram plot(hc) # get ordering of leaves ord <- order.dendrogram(as.dendrogram(hc)) ord # [1] 8 3 6 5 10 1 9 7 2 4 # Same as seen on the dendrogram nodes # Rotate the branches (1,9) & (7,2,4) plot(rotate(hc, c("8", "3", "6", "5", "10", "7", "2", "4", "1", "9")), main="Rotated") </pre>)
- 16:39, 6 August 2023 Brb talk contribs uploaded File:Plotly3d.png
- 15:39, 31 July 2023 Brb talk contribs uploaded File:Filter single.png
- 12:47, 27 May 2023 Brb talk contribs uploaded File:Vibrant ink rstheme.png (https://github.com/captaincaed/rstudio/blob/main/vibrant_ink_SB_2.rstheme)
- 13:46, 21 May 2023 Brb talk contribs uploaded File:R2.png (<syntaxhighlight lang='rsplus'> x <- seq(0, 2.5, length=20) y <- sin(x) plot(x, y) abline(lsfit(x, y, intercept = F), col = 'red') summary(fit)$r.squared # [1] 0.8554949 </syntaxhighlight>)
- 16:02, 11 May 2023 Brb talk contribs uploaded File:Paletteggplot2.png
- 12:12, 10 May 2023 Brb talk contribs uploaded File:Paletteshowcol.png
- 11:15, 10 May 2023 Brb talk contribs uploaded File:Palettebarplot.png (<syntaxhighlight lang='rsplus'> pal <- c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3", "#FF7F00") # pal <- sample(colors(), 10) # randomly pick 10 colors barplot(rep(1, length(pal)), col = pal, space = 0, axes = FALSE, border = NA) </syntaxhighlight>)
- 11:14, 10 May 2023 Brb talk contribs uploaded File:Paletteheatmap.png (<syntaxhighlight lang='rsplus'> pal <- c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3", "#FF7F00") pal <- matrix(pal, nr=2) # acknowledge a nice warning message pal_matrix <- matrix(seq_along(pal), nr=nrow(pal), nc=ncol(pal)) heatmap(pal_matrix, col = pal, Rowv = NA, Colv = NA, scale = "none", ylab = "", xlab = "", main = "", margins = c(5, 5)) # 2 rows, 3 columns with labeling on two axes </syntaxhighlight>)
- 11:08, 10 May 2023 Brb talk contribs uploaded File:Rpalette.png (<syntaxhighlight lang='rsplus'> pal <- palette() # [1] "black" "#DF536B" "#61D04F" "#2297E6" "#28E2E5" "#CD0BBC" "#F5C710" # [8] "gray62" pal_matrix <- matrix(seq_along(pal), nr=1) image(pal_matrix, col = pal, axes = FALSE) # 8 rows, 1 column, but no labeling # Starting from bottom, left. par()$usr # change with the data dim text(0, (par()$usr[4]-par()$usr[3])/8*c(0:7), labels = pal) </syntaxhighlight>)
- 13:52, 9 May 2023 Brb talk contribs uploaded File:Ggplotbarplot.png
- 11:40, 9 May 2023 Brb talk contribs uploaded File:Cbioportal cptac.png
- 21:07, 25 April 2023 Brb talk contribs uploaded File:Losslesscut.png
- 17:47, 23 April 2023 Brb talk contribs uploaded File:Sleepstudy.png (<syntaxhighlight lang='rsplus'> sleepstudy %>% ggplot(aes(x=Days, y = Reaction)) + geom_point() + geom_smooth(method = "lm", se = FALSE) + facet_wrap(~Subject) </syntaxhighlight>)
- 16:58, 17 March 2023 Brb talk contribs uploaded File:Svg4.svg (<pre> svg("svg4.svg", width=4, height=4) plot(1:10, main="width=4, height=4") dev.off() </pre>)
- 10:44, 11 March 2023 Brb talk contribs uploaded File:RStudioVisualMode.png
- 16:01, 8 March 2023 Brb talk contribs uploaded File:Pca directly2.png
- 11:11, 11 February 2023 Brb talk contribs uploaded File:MultipleProbes.PNG
- 11:10, 11 February 2023 Brb talk contribs uploaded File:ClassPredictionOptions.PNG
- 11:08, 11 February 2023 Brb talk contribs uploaded File:ClassPrediction.PNG
- 21:01, 28 January 2023 Brb talk contribs uploaded File:Pca factoextra.png
- 20:34, 28 January 2023 Brb talk contribs uploaded File:Pca autoplot.png
- 20:34, 28 January 2023 Brb talk contribs uploaded File:Pca directly.png
- 10:21, 25 January 2023 Brb talk contribs uploaded File:VscodeEnergy.png
- 22:26, 14 January 2023 Brb talk contribs uploaded File:RbdGeom.png (<pre> require(ggplot2) aggregate( .~ treatment +block,FUN=median, data = data) |> ggplot(aes(treatment, yield)) + geom_line(aes(group = block, color = block), linewidth = 1.2) + geom_point(aes(color = block), shape = 15, size=2.6) </pre>)
- 21:51, 14 January 2023 Brb talk contribs uploaded File:RbdBlock.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:50, 14 January 2023 Brb talk contribs uploaded File:RbdTreat.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 12:18, 12 January 2023 Brb talk contribs uploaded File:GseaTable2.png (An example of a plot from 10 non-enriched pathways. <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # NES pval # 1: -0.4050950 1.0000000 # 2: -0.4050950 1.0000000 # 3: -0.4966664 0.9932584 # 4: 0.4804114 0.9870610 # 5: 0.4804114 0.9870610 # 6: 0.4804114 0.9870610 # 7: 0.4804114 0.9870610 # 8: 0.4955139 0.9854...)
- 12:01, 12 January 2023 Brb talk contribs uploaded File:GseaTable.png (<pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) # I pick 5 pathways with + NES and 5 pathways with - NES. fgseaRes[order(pval), ][62:71, c('pathway', 'NES')] # pathway NES # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.95...)
- 12:15, 8 January 2023 Brb talk contribs uploaded File:Reorder.dendrogram.png (<pre> set.seed(123) x <- rnorm(20) hc <- hclust(dist(x)) dd <- as.dendrogram(hc) par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20) plot(reorder(dd, 20:1), main = 'reorder(dd, 20:1, sum)') plot(reorder(dd, 20:1, mean), main = 'reorder(dd, 20:1, mean)') </pre>)
- 21:37, 7 January 2023 Brb talk contribs uploaded File:ComplexHeatmap2.png (<syntaxhighlight lang="rsplus"> # Simulate data library(ComplexHeatmap) ng <- 30; ns <- 20 set.seed(1) mat <- matrix(rnorm(ng*ns), nr=ng, nc=ns) colnames(mat) <- 1:ns rownames(mat) <- 1:ng # color bar on RHS ind_e <- 1:round(ng/3) ind_m <- (1+round(ng/3)):ng epimes <- rep(c("epi", "mes"), c(length(ind_e), length(ind_m))) row_ha <- rowAnnotation(epimes = epimes, col = list(epimes = c("epi" = "orange", "mes" = "darkgreen"))) # color bar on Top tumortype <- rep(c("carcinoma", "sarcoma"...)
- 12:37, 6 January 2023 Brb talk contribs uploaded File:Fgsea3plots.png (<pre> par(mfrow=c(1,3)) with(fgseaRes, plot(abs(ES), pval)) with(fgseaRes, plot(abs(NES), pval)) with(fgseaRes, plot(ES, NES)) </pre>)
- 14:58, 31 December 2022 Brb talk contribs uploaded File:Filebrowser.png
- 20:07, 25 December 2022 Brb talk contribs uploaded File:DisableDropbox4pm.png
- 15:40, 15 December 2022 Brb talk contribs uploaded File:Geom smooth ex.png (<pre> library(dplyr) #group the data by cyl and create the plots mpg %>% group_by(cyl) %>% ggplot(aes(x=displ, y=hwy, color=factor(cyl))) + geom_point() + geom_smooth(method = "lm", se = FALSE) + theme(legend.position="none") </pre>)
- 15:14, 15 December 2022 Brb talk contribs uploaded File:Geom bar4.png (<pre> ggplot(mpg, aes(x = class)) + geom_vline(xintercept = mpg$class, color = "grey", linetype = "dashed", size = 1) + geom_bar() + theme_classic() + coord_flip() </pre>)
- 15:08, 15 December 2022 Brb talk contribs uploaded File:Geom bar3.png (<pre> ggplot(mpg, aes(x=manufacturer)) + geom_bar() + theme(panel.grid.major.x = element_blank(), panel.grid.minor = element_blank()) </pre>)
- 14:41, 15 December 2022 Brb talk contribs uploaded File:Geom bar2.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", fill = "#F8767D") + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0, 0, 1))) +...)
- 14:39, 15 December 2022 Brb talk contribs uploaded File:Geom bar1.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", aes(fill = x)) + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0,...)
- 18:00, 5 December 2022 Brb talk contribs uploaded File:GpartedinfoSanDisk.png
- 15:55, 29 October 2022 Brb talk contribs uploaded File:ExampleRanks.png (<pre> plot(exampleRanks) </pre>)
- 15:39, 29 October 2022 Brb talk contribs uploaded File:FgseaPlotSmallm.png
- 15:15, 27 October 2022 Brb talk contribs uploaded File:DHdialog2.png
- 15:15, 27 October 2022 Brb talk contribs uploaded File:DHdialog1.png
- 09:46, 27 October 2022 Brb talk contribs uploaded File:HC single.png
- 10:48, 20 October 2022 Brb talk contribs uploaded File:1NN better NC.png
- 17:26, 19 October 2022 Brb talk contribs uploaded File:NC better kNN.png (The green color is a new observation (Sensitive). By using the kNN method, it will be assigned to Resistant b/c it is closer to the Resistant group. However, using the NC, the distance of it to the Resistant group centroid is 8.42 which is larger than the distance of it to the Sensitive groups centroid 7.31. So NC classified it to Sensitive. Color annotation: green=LOO obs, black=centroid in each class.)
- 11:03, 12 October 2022 Brb talk contribs uploaded File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 16:39, 11 October 2022 Brb talk contribs uploaded File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 14:12, 6 October 2022 Brb talk contribs uploaded File:Greedypairs.png
- 11:11, 6 October 2022 Brb talk contribs uploaded a new version of File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot base.png
- 11:50, 30 August 2022 Brb talk contribs uploaded File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 10:31, 30 August 2022 Brb talk contribs uploaded File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:08, 30 August 2022 Brb talk contribs uploaded File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 14:19, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs barall.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs volcano.png
- 07:08, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotTop.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall.png
- 06:33, 27 August 2022 Brb talk contribs uploaded File:FgseaPlot.png
- 15:02, 23 August 2022 Brb talk contribs uploaded File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 14:19, 22 August 2022 Brb talk contribs uploaded File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 10:21, 10 August 2022 Brb talk contribs uploaded File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 19:55, 23 June 2022 Brb talk contribs uploaded File:Tidyheatmap.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcDE.png
- 15:21, 21 June 2022 Brb talk contribs uploaded File:BatchqcVariation.png
- 15:20, 21 June 2022 Brb talk contribs uploaded File:BatchqcSummary.png
- 18:02, 4 June 2022 Brb talk contribs uploaded File:Heatmap rdylbu.png
- 10:06, 27 May 2022 Brb talk contribs uploaded File:Inter gg2.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter base.png
- 09:16, 27 May 2022 Brb talk contribs uploaded a new version of File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs uploaded File:Inter base.svg
- 10:08, 26 May 2022 Brb talk contribs uploaded File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 12:56, 10 May 2022 Brb talk contribs uploaded File:ColorRampBlueRed.png
- 19:39, 24 March 2022 Brb talk contribs uploaded File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs uploaded File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 14:13, 18 March 2022 Brb talk contribs uploaded File:SnrVScor.png
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- 17:07, 30 April 2021 Brb talk contribs uploaded File:BarcodeRanks.png
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- 20:20, 21 March 2021 Brb talk contribs uploaded File:SsGSEA.png
- 10:50, 24 January 2021 Brb talk contribs uploaded File:Scalefill.png
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- 15:28, 7 November 2020 Brb talk contribs uploaded File:Ksnip.png
- 09:43, 26 September 2020 Brb talk contribs uploaded File:Coffeeinteract.png
- 10:48, 24 September 2020 Brb talk contribs uploaded a new version of File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image002.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image004.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://ww...)
- 09:41, 24 September 2020 Brb talk contribs uploaded File:Zlj9991056240002.jpeg
- 09:07, 24 September 2020 Brb talk contribs uploaded File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image006.jpg") x1 <- image_read(u[1]) x2 <- image_read(u[2]) x3 <- image_read(u[3]) x4 <- image_read(u[4]) imgU <- image_append(image_s...)
- 10:28, 9 September 2020 Brb talk contribs uploaded File:Rstudiormarkdown.png (RStudio version 1.3.959 on Ubuntu 20.04)
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- 16:59, 3 May 2020 Brb talk contribs reverted File:KMannotation.png to an old version (Reverted to version as of 16:57, 3 May 2020 (EDT))
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- 16:57, 3 May 2020 Brb talk contribs uploaded a new version of File:KMannotation.png
- 21:54, 2 May 2020 Brb talk contribs uploaded File:KMannotation.png (<pre> library(survival) sf <- survfit(Surv(time, status) ~ x, data = aml) plot(sf, col=c('red', 'black')) </pre>)
- 13:57, 1 May 2020 Brb talk contribs uploaded File:Logscale.png
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- 12:11, 13 April 2020 Brb talk contribs uploaded File:Glmnet4plotn.png (== Summary == <syntaxhighlight lang='rsplus'> library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar) </syntaxhighlight>)
- 12:01, 13 April 2020 Brb talk contribs uploaded File:Glmnet4plot.svg (library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar))
- 11:54, 16 March 2020 Brb talk contribs uploaded File:NeofetchMac.png
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- 21:11, 30 November 2019 Brb talk contribs uploaded File:Soundnormalize.png
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- 16:02, 25 November 2019 Brb talk contribs uploaded File:Geom boxplot.png (ggplot(data.frame(x), aes(1, x)) + geom_boxplot())
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- 13:22, 16 May 2019 Brb talk contribs uploaded File:Jitterboxplot.png
- 16:09, 12 April 2019 Brb talk contribs uploaded File:Twopalette.svg (par(mfrow=c(1,2), mar = c(5,2,2,1)) plot(1:8, col=brewer_pal(palette = "Blues")(8), pch=20, cex=4) plot(1:8, col=rev(brewer_pal(palette = "RdBu")(8)), pch=20, cex=4) dev.off())
- 11:18, 13 March 2019 Brb talk contribs uploaded File:RStudio Build.png
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- 10:20, 28 October 2018 Brb talk contribs uploaded File:Lotsboxplot.png (Figure from the paper "Multiple Testing When Many p-Values are Uniformly Conservative, with Application to Testing Qualitative Interaction in Educational Interventions" by Qingyuan Zhao et al, JASA 2018)
- 14:00, 9 October 2018 Brb talk contribs uploaded File:Tablebrowser2.png
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- 13:33, 1 October 2018 Brb talk contribs uploaded a new version of File:Scatterhist.svg (The R source code is at https://gist.github.com/arraytools/7005670b9d4b34e45f45131a6f87d8f4#file-scatterhist_null)
- 13:21, 1 October 2018 Brb talk contribs uploaded File:Scatterhist.svg (scatterhist <- function(x, y, xlab="", ylab=""){ zones=matrix(c(2,0,1,3), ncol=2, byrow=TRUE) layout(zones, widths=c(4/5,1/5), heights=c(1/5,4/5)) xhist = hist(x, plot=FALSE) yhist = hist(y, plot=FALSE) top = max(c(xhist$counts, yhi...)
- 20:36, 22 September 2018 Brb talk contribs uploaded File:MotionSetting.png
- 16:37, 21 September 2018 Brb talk contribs uploaded a new version of File:Boxdot.svg (boxplot(weight ~ feed, data = chickwts) par(new = TRUE) stripchart(weight ~ feed, data = chickwts, xlim=c(0.5,6.5), vertical=TRUE, method="stack", offset=0.8, pch=19, main = "Chicken weights after six weeks", xlab = "Feed Type", ylab = "Weight (g)"))
- 15:50, 21 September 2018 Brb talk contribs uploaded File:Boxdot.svg
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- 12:55, 25 July 2018 Brb talk contribs uploaded File:Ps1tweak.png
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- 09:18, 14 June 2018 Brb talk contribs uploaded File:Glmnet l1norm.svg
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- 15:59, 3 March 2018 Brb talk contribs uploaded File:Glmnetplot.svg
- 10:21, 1 March 2018 Brb talk contribs uploaded File:R pch.png (source: https://www.statmethods.net/advgraphs/parameters.html)
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- 13:34, 2 January 2018 Brb talk contribs uploaded File:GgplotPalette.svg (See the source code at https://gist.github.com/JohannesFriedrich/c7d80b4e47b3331681cab8e9e7a46e17)
- 16:27, 27 December 2017 Brb talk contribs uploaded File:Vblogo48.png
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- 11:09, 16 March 2017 Brb talk contribs uploaded File:Igv gse48215.png (GSE48215 is a whole exome data.)
- 16:33, 15 March 2017 Brb talk contribs uploaded File:Igv gse11209 junction.png (The data is from BRB-SeqTools tutorial data GSE11209/dT_ori. Genome file is from testdata/Saccharomyces_cerevisiae/Ensembl/EF4/Sequence/WholeGenomeFasta/genome.fa Genes file is from testdata/Saccharomyces_cerevisiae/Ensembl/EF4/Annotation/Genes/gene...)
- 12:40, 15 March 2017 Brb talk contribs uploaded File:Igv dna simul.png
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- 12:46, 3 August 2016 Brb talk contribs uploaded File:QHeatmapScreenShot2.png (BRB-ArrayTools. Without zoom in.)
- 12:45, 3 August 2016 Brb talk contribs uploaded a new version of File:QHeatmapScreenShot.png (BRB-ArrayTools 4.5.1)
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- 22:36, 30 July 2016 Brb talk contribs uploaded File:Swarm fig 1.png (The picture was obtained from https://hpc.nih.gov/apps/swarm.html)
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- 13:49, 4 May 2016 Brb talk contribs uploaded File:Gitmergetool.png (git mergetool (with meld installed))
- 10:13, 1 March 2016 Brb talk contribs uploaded File:Silentnight.png (depth <- 9 angle<-30 #Between branches division L <- 0.90 #Decreasing rate of branches by depth nstars <- 300 #Number of stars to draw mstars <- matrix(runif(2*nstars), ncol=2) branches <- rbind(c(1,0,0,abs(jitter(0)),1,jitter(5, amount = 5)), data.fra...)
- 14:53, 24 February 2016 Brb talk contribs uploaded File:LogitechUnify.png
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- 22:42, 15 February 2016 Brb talk contribs uploaded File:OdroidUbuntu.png (A busy desktop. Odroid xu4 running Ubuntu 15.10.)
- 00:23, 10 January 2016 Brb talk contribs uploaded a new version of File:Mate1510Raspbery2.png
- 00:19, 10 January 2016 Brb talk contribs uploaded a new version of File:Mate1510Raspbery2.png
- 19:25, 27 December 2015 Brb talk contribs uploaded File:MintCinnamonSS.png (Linux Mint 17.3 Cinnamon.)
- 20:38, 25 December 2015 Brb talk contribs uploaded File:Mate1510Raspbery2.png
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- 14:46, 26 November 2015 Brb talk contribs uploaded File:TreemapPop.png
- 13:43, 26 November 2015 Brb talk contribs uploaded File:Turkey.png (See the source of code at http://blog.revolutionanalytics.com/2015/11/happy-thanksgiving.html)
- 12:57, 26 November 2015 Brb talk contribs uploaded File:WiiBalBoard.jpg
- 17:45, 15 November 2015 Brb talk contribs uploaded a new version of File:SainSmart9inch.jpg
- 17:45, 15 November 2015 Brb talk contribs uploaded a new version of File:Udoo9inch720p.jpg
- 17:08, 1 November 2015 Brb talk contribs uploaded File:Udoo9inch720p.jpg
- 20:40, 31 October 2015 Brb talk contribs uploaded File:SainSmart9inch.jpg
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- 12:28, 14 September 2015 Brb talk contribs uploaded a new version of File:QHeatmapScreenShot.png (BRB-ArrayTools v4.5 and 4.4 stable)
- 09:17, 1 September 2015 Brb talk contribs uploaded File:DebianInstall.png
- 20:11, 29 August 2015 Brb talk contribs uploaded File:Atom screenshot.png (To get the markdown preview, go to Packages -> Markdown Preview -> Toggle Preview. Any changes in editor will be reflected in the preview panel.)
- 21:37, 10 August 2015 Brb talk contribs uploaded File:Tiddlybot.jpg
- 16:22, 31 July 2015 Brb talk contribs uploaded File:Dependswalker2.png
- 16:12, 31 July 2015 Brb talk contribs uploaded File:Dependswalker.png
- 10:21, 30 July 2015 Brb talk contribs uploaded File:Methybetavsm.png (mydf = data.frame(beta=seq(0,1,length=100), m=log2(seq(0,1,len=100)/(1-seq(0,1,len=100)))) mydf = subset(mydf, is.finite(mydf$m)) with(mydf, plot(beta, m)))
- 10:19, 30 July 2015 Brb talk contribs uploaded File:Methybetahist.png (x <- read.delim("E:/testdata/Methylation450K_R/AllPatients-Replicates-Repeats_combined.txt", colClasses = c("character", "numeric", rep("NULL", 188)), stringsAsFactors = FALSE) hist(x[, 2], xlab="beta", main="Methylation 450k beta"))
- 15:19, 29 July 2015 Brb talk contribs uploaded File:Gitk2.png
- 15:11, 29 July 2015 Brb talk contribs uploaded File:Gitk.png
- 19:07, 24 July 2015 Brb talk contribs uploaded a new version of File:Qt486MinGW.png
- 18:55, 24 July 2015 Brb talk contribs uploaded File:Qt486MinGW.png
- 18:46, 24 July 2015 Brb talk contribs uploaded File:QtOpenSourceMinGW.png
- 10:44, 24 July 2015 Brb talk contribs uploaded File:CentralDogmaMolecular.png (Downloaded from http://static.msi.umn.edu/tutorial/lifescience/RNA-Seq-Module-1.pdf)
- 10:07, 14 July 2015 Brb talk contribs uploaded File:Qtoptions debugger.png
- 10:06, 14 July 2015 Brb talk contribs uploaded File:Qtoptions compiler.png
- 10:06, 14 July 2015 Brb talk contribs uploaded File:Qtoptions version.png
- 10:05, 14 July 2015 Brb talk contribs uploaded File:Qtoptions kits.png
- 21:12, 10 July 2015 Brb talk contribs uploaded File:ChengSquattingsinglewhip.JPG
- 10:36, 1 July 2015 Brb talk contribs uploaded File:D3heatmap highlight.png
- 10:36, 1 July 2015 Brb talk contribs uploaded File:D3heatmap zoomin.png
- 10:36, 1 July 2015 Brb talk contribs uploaded File:D3heatmap mouseover.png
- 10:35, 10 June 2015 Brb talk contribs uploaded File:Geo platform.png
- 10:35, 10 June 2015 Brb talk contribs uploaded File:Geo series.png
- 10:35, 10 June 2015 Brb talk contribs uploaded File:Geo datasets.png
- 10:31, 10 June 2015 Brb talk contribs uploaded File:Geo samples.png
- 10:03, 10 June 2015 Brb talk contribs uploaded File:UbuntuGnome1404b.png
- 10:02, 10 June 2015 Brb talk contribs uploaded File:UbuntuGnome1404.png
- 15:26, 28 May 2015 Brb talk contribs uploaded File:AT multi Genbank.png
- 14:50, 21 May 2015 Brb talk contribs uploaded File:IGV fly Anders2013 2.png (Note that a position may contain more than 1 transcript. For example position 10,565,590 (see the bottom-left corner) contains 4 transcripts FBtr0087477, FBtr0332468, FBtr0332466, and FBtr0087478.)
- 14:24, 21 May 2015 Brb talk contribs uploaded File:IGV fly Anders2013.png (Search by gene name FBtr0087477)
- 16:46, 15 May 2015 Brb talk contribs uploaded File:PkgDepTools dep.svg
- 16:44, 15 May 2015 Brb talk contribs uploaded File:MiniCRAN dep.svg
- 09:18, 13 May 2015 Brb talk contribs uploaded File:Lumi rgraphviz.svg
- 21:46, 10 May 2015 Brb talk contribs uploaded File:Crouton ubuntu2.png
- 21:46, 10 May 2015 Brb talk contribs uploaded File:Crouton ubuntu.png
- 21:40, 10 May 2015 Brb talk contribs uploaded File:Chrome shell.png
- 13:12, 6 May 2015 Brb talk contribs uploaded File:IGV whole color.png
- 14:34, 1 May 2015 Brb talk contribs uploaded File:VBoxsnapshot1.png
- 14:33, 1 May 2015 Brb talk contribs uploaded File:VBoxsnapshot2.png
- 14:17, 1 May 2015 Brb talk contribs uploaded File:VBoxSnapshot.png
- 15:10, 29 April 2015 Brb talk contribs uploaded File:Genomicalignments dep.svg
- 15:09, 29 April 2015 Brb talk contribs uploaded File:Genomicfeature dep dep.svg
- 14:44, 29 April 2015 Brb talk contribs uploaded File:Deseq2 dep.svg
- 14:43, 29 April 2015 Brb talk contribs uploaded File:Lumi dep.svg
- 13:50, 29 April 2015 Brb talk contribs uploaded File:Glmnet dep.svg
- 14:52, 28 April 2015 Brb talk contribs uploaded File:Boxplot.svg
- 14:54, 27 April 2015 Brb talk contribs uploaded File:RPackageWriting.png
- 20:52, 25 March 2015 Brb talk contribs uploaded File:BBB vnc.png
- 12:09, 25 March 2015 Brb talk contribs uploaded a new version of File:SnappyRaspPi.png
- 12:05, 25 March 2015 Brb talk contribs uploaded File:SnappyRaspPi.png
- 09:05, 19 March 2015 Brb talk contribs uploaded a new version of File:UUIa.png
- 08:52, 19 March 2015 Brb talk contribs uploaded File:UUIb.png
- 08:52, 19 March 2015 Brb talk contribs uploaded File:UUIa.png
- 17:19, 27 January 2015 Brb talk contribs uploaded File:Boot2docker-vm.png
- 16:32, 21 January 2015 Brb talk contribs uploaded File:Qt MaintenanceTool.png
- 14:25, 21 January 2015 Brb talk contribs uploaded File:DoxyWizard.png
- 20:08, 20 January 2015 Brb talk contribs uploaded File:Anscombe's quartet 3.svg (The graph is obtained from wikipedia http://en.wikipedia.org/wiki/Anscombe%27s_quartet)
- 14:03, 12 January 2015 Brb talk contribs uploaded File:RugFunction.png (require(stats) # both 'density' and its default method with(faithful, { plot(density(eruptions, bw = 0.15)) rug(eruptions) rug(jitter(eruptions, amount = 0.01), side = 3, col = "light blue") }))
- 18:15, 25 December 2014 Brb talk contribs uploaded File:QtCreatorDebug.png
- 16:46, 21 December 2014 Brb talk contribs uploaded File:XMastree.png
- 15:53, 17 December 2014 Brb talk contribs uploaded File:KMcurvesvg.svg
- 15:41, 17 December 2014 Brb talk contribs uploaded File:KMcurve.png (> library(survival) > plot(leukemia.surv <- survfit(Surv(time, status) ~ x, data = aml[7:17,] ) , lty=2:3) > legend(100, .9, c("Maintenance", "No Maintenance"), lty = 2:3) > title("Kaplan-Meier Curves\nfor AML Maintenance Study"))
- 16:35, 8 December 2014 Brb talk contribs uploaded File:Beaglebone-specs.png (Source: http://satishk92.files.wordpress.com/2013/08/beaglebone-specs.png)
- 21:02, 13 November 2014 Brb talk contribs uploaded File:3dpersp.png
- 17:08, 13 November 2014 Brb talk contribs uploaded File:Simpleimage2.png
- 16:50, 13 November 2014 Brb talk contribs uploaded File:Simpleimage.png
- 10:48, 5 November 2014 Brb talk contribs uploaded File:Colordiff.png
- 10:01, 3 November 2014 Brb talk contribs uploaded File:WolframPi.png
- 16:33, 2 November 2014 Brb talk contribs uploaded File:UbuntuServerInstall.png
- 09:35, 20 October 2014 Brb talk contribs uploaded File:Bluetooth Android Windows.png
- 17:52, 11 October 2014 Brb talk contribs uploaded File:Ucsc hg18.txt (Obtained from tar tzvf Homo_sapiens_UCSC_hg18.tar.gz > Ucsc_hg18.txt)
- 21:42, 5 October 2014 Brb talk contribs uploaded File:Chipotle2.png
- 21:38, 5 October 2014 Brb talk contribs uploaded File:Chipotle.png
- 10:13, 1 October 2014 Brb talk contribs uploaded File:Heatmap deseq2.png
- 12:34, 16 September 2014 Brb talk contribs uploaded File:Gitlab3.png
- 11:24, 16 September 2014 Brb talk contribs uploaded File:Gitlab1.png
- 11:24, 16 September 2014 Brb talk contribs uploaded File:Gitlab2.png
- 21:54, 15 September 2014 Brb talk contribs uploaded File:ProMini vs Nano.jpg (Nano is cheaper and more convenient (built-in USB) although it is a little larger than Pro mini. See http://arduino.cc/en/Products.Compare.)
- 10:37, 26 August 2014 Brb talk contribs uploaded File:WebBrowser48.png (http://ubuntuguide.org/images/e/e7/WebBrowser48.png)
- 10:36, 26 August 2014 Brb talk contribs uploaded File:Games48.png (http://ubuntuguide.org/images/1/17/Games48.png)
- 10:35, 26 August 2014 Brb talk contribs uploaded File:VirtualPC48.png (http://ubuntuguide.org/images/d/dc/VirtualPC48.png)
- 10:34, 26 August 2014 Brb talk contribs uploaded File:Landscape36.png
- 10:33, 26 August 2014 Brb talk contribs uploaded File:FileDrawer48.png (http://ubuntuguide.org/images/e/e0/FileDrawer48.png)
- 10:31, 26 August 2014 Brb talk contribs uploaded File:FullBox48.png (http://ubuntuguide.org/images/5/5f/FullBox48.png)
- 10:30, 26 August 2014 Brb talk contribs uploaded File:DownloadArrow48.png (http://ubuntuguide.org/images/c/cd/DownloadArrow48.png)
- 10:28, 26 August 2014 Brb talk contribs uploaded File:Megaphone48.png (http://ubuntuguide.org/images/3/39/Megaphone48.png)
- 11:57, 22 August 2014 Brb talk contribs uploaded a new version of File:RelayDiagram2.png
- 11:41, 22 August 2014 Brb talk contribs uploaded File:RelayDiagram2.png (See sparkfun inventor kit circuit#13. https://www.sparkfun.com/products/retired/11227 The [https://www.sparkfun.com/products/100 relay] has 5 pins.)
- 11:41, 7 August 2014 Brb talk contribs uploaded File:HeartRateMonitor2.jpg
- 06:46, 13 July 2014 Brb talk contribs uploaded File:ArduinoDCmotor.jpg
- 06:45, 13 July 2014 Brb talk contribs uploaded File:ArduinoMotorRPM.png
- 08:05, 11 May 2014 Brb talk contribs uploaded File:Bbb-pwm.png
- 21:16, 3 May 2014 Brb talk contribs uploaded File:MicroSD BBB.png
- 07:00, 29 April 2014 Brb talk contribs uploaded File:NewSD Partition.png
- 11:31, 10 April 2014 Brb talk contribs uploaded File:CGHTools Pathway.png
- 11:31, 10 April 2014 Brb talk contribs uploaded File:CGHTools Gistic.png
- 11:30, 10 April 2014 Brb talk contribs uploaded File:CGHTools GainLoss.png
- 11:30, 10 April 2014 Brb talk contribs uploaded File:CGHTools Segmentation.png
- 11:00, 9 April 2014 Brb talk contribs uploaded File:IGV whole.png
- 10:49, 9 April 2014 Brb talk contribs uploaded File:IGV.png
- 12:22, 26 March 2014 Brb talk contribs uploaded File:BBB Qt drawing.png
- 20:50, 25 March 2014 Brb talk contribs uploaded File:AndroidMicroSD.png (Udoo)
- 20:40, 25 March 2014 Brb talk contribs uploaded File:GalaxyInitial.png
- 20:00, 22 March 2014 Brb talk contribs uploaded File:BbbDebian.png
- 08:34, 17 March 2014 Brb talk contribs uploaded File:XUbuntu gparted.png
- 08:13, 17 March 2014 Brb talk contribs uploaded File:XUbuntu12044 USBdrive.png
- 10:33, 17 February 2014 Brb talk contribs uploaded File:Qtdensity.png
- 17:04, 24 January 2014 Brb talk contribs uploaded a new version of File:QHeatmapScreenShot.png
- 22:37, 19 January 2014 Brb talk contribs uploaded File:LcdShieldArduino.jpg
- 23:37, 18 January 2014 Brb talk contribs uploaded File:UdooThroughVnc.jpg
- 17:28, 12 January 2014 Brb talk contribs uploaded File:BeagleboneCup.jpg
- 22:26, 28 December 2013 Brb talk contribs uploaded File:Ftdi2ttlRaspPi.png
- 23:55, 26 December 2013 Brb talk contribs uploaded File:Ftdi2ttlserialcable.jpg
- 21:22, 27 November 2013 Brb talk contribs uploaded File:BlackUSR.png
- 17:16, 9 November 2013 Brb talk contribs uploaded File:7segmentLED.jpg
- 15:21, 2 November 2013 Brb talk contribs uploaded File:QHeatmapScreenShot.png
- 12:53, 8 October 2013 Brb talk contribs uploaded File:ProcessingPotentiometer.png
- 14:12, 6 October 2013 Brb talk contribs uploaded File:BBBservo.jpg
- 20:18, 4 October 2013 Brb talk contribs uploaded File:Adxl345.jpg
- 18:40, 28 September 2013 Brb talk contribs uploaded File:GoogleVis.png
- 13:18, 14 August 2013 Brb talk contribs uploaded File:WindowsSecurityAlert.png
- 09:21, 9 August 2013 Brb talk contribs uploaded File:Bio7 3.png
- 09:21, 9 August 2013 Brb talk contribs uploaded File:Bio7 2.png
- 09:20, 9 August 2013 Brb talk contribs uploaded File:Bio7 1.png
- 18:15, 30 June 2013 Brb talk contribs uploaded File:MicroServo.jpg
- 08:49, 13 June 2013 Brb talk contribs uploaded File:Bluetooth.jpg (JYMCU Bluetooth module http://dx.com/p/jy-mcu-arduino-bluetooth-wireless-serial-port-module-104299 )
- 08:46, 13 June 2013 Brb talk contribs uploaded File:StepperMotor.jpg
- 17:40, 18 May 2013 Brb talk contribs uploaded File:Robot ping.jpg
- 17:22, 11 May 2013 Brb talk contribs uploaded File:Raspberry-pi-gpio-cheat-sheet.jpg
- 22:43, 10 May 2013 Brb talk contribs uploaded a new version of File:Robot Infrared.jpg
- 12:47, 6 May 2013 Brb talk contribs uploaded a new version of File:Hmv BRCA.png
- 12:44, 6 May 2013 Brb talk contribs uploaded File:Hmv BRCA.png
- 20:42, 28 April 2013 Brb talk contribs uploaded File:Raspberry-Pi-GPIO-Layout-Revision-2.png
- 21:17, 22 April 2013 Brb talk contribs uploaded File:Robot Infrared.jpg
- 18:36, 21 April 2013 Brb talk contribs uploaded File:Robot whisker.jpg
- 19:01, 5 April 2013 Brb talk contribs uploaded File:MatrixLED.jpg
- 13:54, 1 April 2013 Brb talk contribs uploaded File:Hc ward.png (Hierarchical clustering by using Ward linkage and Euclidean distance.)
- 13:54, 1 April 2013 Brb talk contribs uploaded File:Hc ave.png (Hierarchical clustering by using average linkage and Euclidean distance.)
- 13:53, 1 April 2013 Brb talk contribs uploaded File:Hc com.png (Hierarchical clustering by using complete linkage and Euclidean distance.)
- 09:48, 17 March 2013 Brb talk contribs uploaded File:RpyLCD.jpg
- 10:00, 9 March 2013 Brb talk contribs uploaded File:SingleLED.jpg
- 11:47, 5 March 2013 Brb talk contribs uploaded File:IngenuityAnalysisOutput.png
- 11:15, 22 February 2013 Brb talk contribs uploaded File:Build R log.txt (Complete log of building R from source )
- 16:11, 21 January 2013 Brb talk contribs uploaded File:ViewActiveNetwork.png
- 16:10, 21 January 2013 Brb talk contribs uploaded File:Firewall.png
- 08:34, 30 November 2012 Brb talk contribs uploaded File:Install MySQL on Windows.pdf
- 08:59, 29 November 2012 Brb talk contribs uploaded File:Rtools installation.pdf
- 14:15, 23 November 2012 Brb talk contribs uploaded File:BioLinux.png
- 10:28, 21 November 2012 Brb talk contribs uploaded File:BRB samplesize.png
- 10:24, 21 November 2012 Brb talk contribs uploaded File:BRB sam.png
- 10:22, 21 November 2012 Brb talk contribs uploaded File:BRB ClassComp.png
- 10:19, 21 November 2012 Brb talk contribs uploaded File:BRB Prediction.png
- 10:16, 21 November 2012 Brb talk contribs uploaded File:BRB SRP.png
- 10:10, 21 November 2012 Brb talk contribs uploaded File:ArrayTools GUI.png
- 10:04, 21 November 2012 Brb talk contribs uploaded File:BRB 3Dplot2.png