Text editor

	Platforms	Pros	Cons
Atom	Cross	built-in markdown file preview
Bluefish	Cross	remote file, project support	crash when I try Print->Preview
Brackets	Cross	good for web designer
Emacs	Cross	split the buffers
Gedit	Cross	print preview (incorrect when landscape but pdf is right)	no code folding
Geany	Cross	print preview; Terminal; split window
IntelliJ IDEA	Cross
Notepad++	Win	print line numbers, Right-click menu	R syntax highlight not work with most themes
Qt Creator	Cross	split a window (even same file)
RStudio	Cross	folding, best IDE for R coding	not support drag and drop a file but SendTo works
Sublime	Cross	menu -> Goto -> Bookmarks -> Toggle bookmarks (Ctrl + F2)
vi	Cross
Visual Studio Code	Cross	Integrated Terminal, Markdown preview. "minimap" can be removed by unchecking "Controls whether the minimap is shown".

HTML editors: see here.

Atom

• Markdown preview feature is OK but it cannot export to pdf or HTML.
• pandoc conversion to html/PDF is not good; scripts part has no rectangle, tables have no separate lines.

Packages

To install a new package, go to Preferences -> Install -> type the package name and hit ENTER.

To remove a package, just delete the related folder.

rm -rf ~/.atom/packages/markdown-toc

• Markdown Preview Enhanced. It allows to view in browser (html) or export to PDF. Use r instead of R for R language syntax highlight. Another nice feature is the scrollings of the markdown file and preview are together.
• Markdown TOC. It messes up the # sign in script blocks :( So I switch to RStudio which has a good support to create the TOC (YAML header).

Emacs

• Install on Ubuntu. sudo apt install emacs
• Keyboard shortcuts
  • Save file: ctrl + x, ctrl + s
  • Quit: ctrl + x, ctrl + c
  • Forward search/backward search: ctrl + s, ctrl + r
• Disabling Backup and Auto-save in Emacs and Change theme

$ cat ~/.emacs
;disable backup
(setq backup-inhibited t)
;disable auto save
(setq auto-save-default nil)
(load-theme 'manoj-dark)

Gedit

• To create a new tab, Ctrl + t.
• Preferences
  • View: display line numbers, highlight current line
  • Font and colors: change to font size 14, color scheme = Cobalt
  • Plugins: External Tools
• To split a screen, Do "Documents -> New Tab Group. No extra plugin is needed to download. I am using version 3.10.4 from Ubuntu 14.04.
• Restore tabs plugin. It works on my gedit 3.4 (ubuntu 12.04). Follow the instruction there exactly.
• Source code browser plugin. This makes gedit a good IDE for developing C++/Java code since the left panel can show symbols. Click F9 to show the side panel.
• Darkmate theme.

cd /usr/share/gtksourceview-3.0/styles
sudo gedit darkermate.xml

gedit > Edit > preferences > font and colors > color scheme.

Launch from a command line

gksu gedit XXXX

Plugins

• Gedit has no built-in options to show special characters except through gedit-plugins (sudo apt-get install gedit-plugins). See Draw Spaces.
• How do I open a Terminal window in gEdit?
  1. sudo apt-get install gedit-plugins
  2. Edit -> Preferences -> Plugins -> Embedded terminal
  3. View -> Bottom panel

Geany

Geany can be used to run a bash script file line by line. See Debugging_Scripts.

Display special characters

Geany has a way to show special characters (Tabs/LF/CR). Edit > Preferences > Display > Tick, Show whitespace (tabs) & Show Line endings(CR/LF).

For DOS text file, the line ending is CR+LF.

For Unix text file, the line ending is LF.

Font size

Users can use either one of the following methods

1. Edit -> Preferences -> Interface -> Fonts to adjust the font size.
2. Keyboard bindings: Ctrl + Shift + '+' to increase the font size or Ctrl + '-' to decrease the font size. This does not affect the font size in Preferences.

Printing

The font size in Preferences affects the printing. The font size changed by using the keyboard bindings does not affect printing.

Remove vertical line

Edit -> Preferences -> Editor -> Display -> Uncheck Long line marker.

Visual Studio Code

10 Essential Productivity Tips for Visual Studio Code

Sublime

Install it from the Snap Store on Linux

My settings file which takes care of the scheme, font size and word wrap.

{
	"color_scheme": "Packages/Color Scheme - Default/Monokai.sublime-color-scheme",
	"font_size": 16,
	"open_files_in_new_window": false,
	"word_wrap": true,
	"theme": "Default.sublime-theme"
}

nano editor

Keyboard shortcuts

Actually there is no need to memorize them because the common shortcuts are always displayed at the bottom of the screen (ctrl+g to get more).

• Ctrl+c: cur pos
• Ctrl+y: prev screen
• Ctrl+v: next screen
• Ctrl+k: cut
• Ctrl+u: paste
• Ctrl+w: search
• Alt+w: search next (macOS does not work)
• Ctrl+r: insert another file at cur
• Alt+r: search and replace

Permission denied and sudoedit command

When I run 'nano tmp', I got a message: Error reading /home/odroid/.nano/search_history: Permission denied. Press Enter to continue.

odroid@odroid:~$ ls -ld /home/odroid/.nano
drwxr-xr-x 2 root root 4096 Feb 12 08:01 /home/odroid/.nano
odroid@odroid:~$ ls -l /home/odroid/.nano
total 4
-rw------- 1 root root 15 Feb 12 08:01 search_history

A simple solution is

sudo chown -R odroid:odroid /home/odroid/.nano  # note '-R' has to be capital

This seems to be a bug in nano after we use 'sudo nano [file]' (eg 'sudo nano /etc/chromium-browser/default') when the 'nano' program has not been run before.

• superuser.com. A better habit to get into is to use sudoedit or sudo -e instead of 'sudo nano'.
• Why use 'sudoedit' or 'sudo -e' - security reason
• http://superuser.com/questions/785187/sudoedit-why-use-it-over-sudo-vi
• gksudo is also useful if we want to run a GUI program under root. For example gedit or gparted.
• visudo is used to edit /etc/sudoers file only

The bottom line is use something like below for editing system files

EDITOR=nano sudoedit /etc/chromium-browser/default

show line number/cursor position

Use the -c option for cursor position.

nano -c FILENAME

Enable soft line wrapping

nano -$ FILENAME
nano --softwrap FILENAME

Not that

1. "-$" is the same as "--softwrap". The option "-s" has a different meaning; see below.
2. "-s program" means to use this alternative spell checker command.
3. these options are not available on the NIH/Biowulf. I need to use emacs/vi/joe. The keyboard shortcuts for joe can be found here.

syntax highlight

Add a syntax highlight support for some languages

$ ls /usr/share/nano/
asm.nanorc    html.nanorc  mutt.nanorc    perl.nanorc    ruby.nanorc
c.nanorc      java.nanorc  nanorc.nanorc  pov.nanorc     sh.nanorc
groff.nanorc  man.nanorc   patch.nanorc   python.nanorc  tex.nanorc
$ cat ~/.nanorc
include /usr/share/nano/sh.nanorc
include /usr/share/nano/c.nanorc
include ~/r.nanorc

R syntax highlight file r.nanorc. Note that I have to comment out line 29 starting with 'header'. A personal copy is saved in github.

To disable syntax highlight (useful if we use a terminal app on an Android ebook reader such as Boox), add -Ynone parameter.

vi editor

• What is the difference between Vi and Vim?

Keys

• Page down: ctrl +f. Page up: Ctrl +b
• ^: beginning of a line. $: end of a line.
• command mode : this is the default when you run vi. Hit Esc key to return to the command mode. Command mode is right for moving about a file, copying or deleting a line, saving a file, etc.
• Insert/edit mode : hit "i" (insert text before cursor position) or "a" (add text after cursor position) to enter the edit mode. The screen will show the text -- INSERT -- on the last line of the vi editor.
• Command mode/leave edit mode: "ESC". In this mode, you can search, navigate or enter an insert model.
• Last line mode: Press ':', vi editor will show ':' on the last line. If we continue to type 'q[Enter]' we will quit vi. If we continue to type 'wq', it will write the file and quits.
• Moving around
  • line beginning: "0"
  • line end: "$"
  • last row: "G"
• delete a character under the cursor: "x". Delete the remainder of line: "D". Delete entire line: "dd"
• undo: "u"
• search forward: "/pattern" (case sensitive). Hit "n" to repeat search.
• Highlight search ":set hlsearch". To disable highlight ":set nohlsearch"
• search backward: "?pattern" (case sensitive). Hit "n" to repeat search.
• save: ":w"
• quit: ":q"
• quit without saving: ":q!"
• save and quit: ":x" or ":wq" (note that ":qw" won't work; you want to write and then quit!)
• Run external command ":! command"
• Display line numbers ":set nu". Add "set number" to your .vimrc file in your home directory.
• Ignore cases when searching ":set ic"

Some helps

• http://mathlab.cit.cornell.edu/local_help/vi.html
• http://www.lagmonster.org/docs/vi.html and more complete one.
• Difference between vi and vim. Especially Vim allows the screen to be split for editing multiple files. Use ":split" to split a screen using the same file, ":split filename" to split the screen using a new file and "Ctrl-w + Ctrl-w" to switch screens/viewports. More keyboard controls can be found at linux.com.
• Advanced concepts

color schemes

On my Mint 18.2, the color syntax is off. It does not work if I try to enable it.

The solution is install vim (sudo apt-get install vim). After that, the syntax highlight works automatically; no need to turn it on manually.

To change the color scheme on-the-fly, type :colorscheme then Space followed by TAB. The 'darkblue' looks cool.

The list can be found at /usr/share/vim/vimNN/colors.

On Raspbian OS , we should use the method described here. That is, sudo nano /etc/vim/vimrc and uncomment out the line containing syntax on.

plugin

On Mac, I need to run mkdir ~/.vim/plugin'. Then I can put the downloaded .vim file (e.g. R syntax highlight) there.

Also I may need to modify ~/.vimrc file by adding some options,

syntax on
filetype plugin on

Theme

Write or Code Faster in Your Linux Text Editor With Custom Themes

Text editor with navigation

7 Best Note-Taking Tools for Programmers

http://www.makeuseof.com/tag/best-note-taking-tools-programmers/

RStudio

Code -> Insert Section

We can create different levels of sections.

Netbeans and navigator

On ODroid (ARM works too!) Ubuntu 16.04

# Note: OpenJDK 8 will not work
# We have to install Oracle Java
sudo add-apt-repository ppa:webupd8team/java
sudo apt-get update
sudo apt-get install oracle-java8-installer

sudo apt-get install netbeans # version 8.1 in my case

See screenshots

• Markdown support
• HTML support

Note:

• Netbeans has a built-in support for HTML/XML files. XML has an advantage over HTML since HTML cannot have any tags you want.
• We need to download a plugin for markdown file support. Go to Tools -> Plugins. In the 'Settings' tab make sure the 3 items are checked. Go to 'Available plugins' tab

search 'markdown'. Install 'Markdown support'. It works on Netbeans 8.0 on x64 Ubuntu 14.04 and Netbeans 8.1 on my ARM Ubuntu 16.04.

• For Markdown or XML, the comment syntax can be found here.
• For some reason, the order of headlines on the navigator pane is not the same as they appeared on the file. So it is better to use XML file format.
• My hack on Netbeans options (change to use a dark color on background).
  • Profile: NetBeans
  • Syntax. Default: Foreground=White, Background=Dark Gray. Comment: Foreground=cyan. Keyword: Foreground=Orange.
  • Highlighting. Highlight Caret Row: Foreground=Dark Gray. Background=Pink.
• For choosing colors, go to Google: rgb to hex
• For some reason, it makes my graphical Mint desktop unstable. I have to use Ctrl + Alt + F1 and Ctrl + Alt + F8 to fix it temporarily. Deal breaker!

IntelliJ IDEA

It requires JDK. The community version is free. Download the tarball. Extract it and run bin/idea.sh. It even identifies a mismatch in my XML documentation that netbeans does not find.

• Viewing Structure of a Source File or Alt + 7
• Open a terminal at the bottom; Alt + F12
• SOLARIZED color. Copy icls file to ~/.IdeaIC2016.2/config/colors directory. Restart Intellij IDEA. Go to File -> Settings -> Editor -> Colors & Fonts -> Font.
• To deactivate spelling checking: Ctrl + Alt + s -> Editor -> Inspections -> Spelling -> Typo. Uncheck it.
• We need to create a project for IntelliJ IDEA to automatically open the file we are working on. IDEA will create a hidden folder call .idea. For git repository, we shall create the .gitignore file contains

.idea/workspace.xml
.idea/misc.xml

Zim

• Available in Linux, Windows & Mac.
• The side panel contains a hierarchical view of the pages.
• Right click on the page tab, we can create a new page or sub page.
• On Ubuntu, the title bar is on the top of the desktop.
• Auto save. Auto re-open the last session.
• Handles several types of markup, like headings, bullet lists and of course bold, italic and highlighted. This markup is saved as wiki text so you can easily edit it with other editors.
• Toggle notebook editable.
• Insert image (cannot resize)
• Plugins, e.g. Equation editor, R plot,
• The default folder for storing the notes is ~/Notebook. Each page has its own file in storage.

~/Notebooks/Notes/
~/Notebooks/Notes/notebook.zim
~/Notebooks/Notes/Home.txt

If we create a 2nd page called 'Home2' with sub pages 'Subpage1' and 'subpage2' we will have

~/Notebooks/Notes/Home2.txt
~/Notebooks/Notes/Home2
~/Notebooks/Notes/Home2/subpage1.txt
~/Notebooks/Notes/Home2/subpage2.txt

• Getting Work Done in Zim

Cherrytree - a hierarchical note taking application

featuring rich text and syntax highlighting, storing data in a single xml or sqlite file.

Vim

with the Tagbar plugin.

The instruction works for cpp file.

Unfortunately xml files are not supported from my testing. See its wiki for supported filetypes.

Lime

Maybe