User contributions for Brb

09:2609:26, 13 January 2023 diff hist +1,389 Survival data →Prognostic index/risk scores
09:1909:19, 13 January 2023 diff hist +1,902 Cancer →Differentiated
09:0709:07, 13 January 2023 diff hist +2,374 Cancer →Differentiated
08:5708:57, 13 January 2023 diff hist +96 Cancer →Tumor types

16:1216:12, 12 January 2023 diff hist +69 Genome →Tumor mutational burden
16:0416:04, 12 January 2023 diff hist +547 Genome →Tumor mutational burden
15:4415:44, 12 January 2023 diff hist +166 Genome →Tumor mutational burden
15:3615:36, 12 January 2023 diff hist +493 Genome →Tumor mutational burden
11:3611:36, 12 January 2023 diff hist +67 GSEA →Examples
11:2111:21, 12 January 2023 diff hist +208 GSEA →Examples
11:1811:18, 12 January 2023 diff hist +747 N File:GseaTable2.png An example of a plot from 10 non-enriched pathways. <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # NES pval # 1: -0.4050950 1.0000000 # 2: -0.4050950 1.0000000 # 3: -0.4966664 0.9932584 # 4: 0.4804114 0.9870610 # 5: 0.4804114 0.9870610 # 6: 0.4804114 0.9870610 # 7: 0.4804114 0.9870610 # 8: 0.4955139 0.9854... current
11:0111:01, 12 January 2023 diff hist +1,315 N File:GseaTable.png <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) # I pick 5 pathways with + NES and 5 pathways with - NES. fgseaRes[order(pval), ][62:71, c('pathway', 'NES')] # pathway NES # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.95... current
09:5509:55, 12 January 2023 diff hist +158 GSEA →Examples

17:1717:17, 11 January 2023 diff hist +82 Statistics →Mixed Effect Model
17:0917:09, 11 January 2023 diff hist +51 Genome →Shrinkage estimators
17:0217:02, 11 January 2023 diff hist +1,314 Genome →Undifferentiated cancer
16:5616:56, 11 January 2023 diff hist +6,094 Genome →Shrinkage estimators
15:0415:04, 11 January 2023 diff hist +8 Genome →Shrinkage estimators
15:0315:03, 11 January 2023 diff hist +1,754 Genome →Shrinkage estimators
14:4114:41, 11 January 2023 diff hist +1,019 Genome →Shrinkage estimators
08:0708:07, 11 January 2023 diff hist +364 Grub →Dual boot

20:1120:11, 10 January 2023 diff hist +55 R →Organize R research project
19:5619:56, 10 January 2023 diff hist +131 R packages →install a package as it existed on a specific date/snapshot: mran repository
19:5119:51, 10 January 2023 diff hist +76 Virtualbox →Virtual networks
15:4915:49, 10 January 2023 diff hist −3,123 Regression →Confounders, confounding
15:4815:48, 10 January 2023 diff hist +5,080 T-test →Two-way ANOVA
15:2415:24, 10 January 2023 diff hist +3,188 Regression →Confounders, confounding
15:0415:04, 10 January 2023 diff hist +1,532 Life →Best way to persuade someone that they're wrong
13:2113:21, 10 January 2023 diff hist +247 Genome →Base quality, Mapping quality, Variant quality

20:2920:29, 9 January 2023 diff hist +58 Heatmap →Reorder dendrograms
15:1715:17, 9 January 2023 diff hist +175 Chrome →Reduce memory/manage tabs

18:3618:36, 8 January 2023 diff hist +163 AI →ChatGPT
18:3418:34, 8 January 2023 diff hist +167 Windows →Local accounts
18:3318:33, 8 January 2023 diff hist +158 Docker Applications →Run a benchmark program on ARM devices
18:3118:31, 8 January 2023 diff hist +9 Life →Pension, Federal Employees Retirement System/FERS
18:3018:30, 8 January 2023 diff hist +66 Life No edit summary
18:2618:26, 8 January 2023 diff hist +92 AI →ChatGPT
18:2518:25, 8 January 2023 diff hist +101 Recipes →飯糰 (Onigiri, rice ball), 韓國烤肉
18:2318:23, 8 January 2023 diff hist +178 Windows →How to Secure Your Accounts With 2FA
18:2118:21, 8 January 2023 diff hist +160 Windows →Windows 11
18:2018:20, 8 January 2023 diff hist +220 R →plyr and dplyr packages
18:1718:17, 8 January 2023 diff hist +164 Genome →Integrate/combine Omics
15:4715:47, 8 January 2023 diff hist +31 Heatmap →Reorder dendrograms
15:4115:41, 8 January 2023 diff hist +1,100 Heatmap →Reorder dendrograms
14:5714:57, 8 January 2023 diff hist 0 Heatmap →Rowv, Colv: reorder of rows and columns
12:4812:48, 8 January 2023 diff hist +27 Heatmap →Rowv, Colv: reorder of rows and columns
11:2411:24, 8 January 2023 diff hist +335 Heatmap →Rowv, Colv: reorder of rows and columns
11:1511:15, 8 January 2023 diff hist +788 Heatmap →Rowv, Colv: reorder of rows and columns
11:1511:15, 8 January 2023 diff hist +321 N File:Reorder.dendrogram.png <pre> set.seed(123) x <- rnorm(20) hc <- hclust(dist(x)) dd <- as.dendrogram(hc) par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20) plot(reorder(dd, 20:1), main = 'reorder(dd, 20:1, sum)') plot(reorder(dd, 20:1, mean), main = 'reorder(dd, 20:1, mean)') </pre> current
10:1110:11, 8 January 2023 diff hist +2,127 Heatmap No edit summary

13 January 2023

12 January 2023

11 January 2023

10 January 2023

9 January 2023

8 January 2023