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Combined display of all available logs of 太極. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 11:03, 12 October 2022 Brb talk contribs created page File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 11:03, 12 October 2022 Brb talk contribs uploaded File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 16:39, 11 October 2022 Brb talk contribs created page File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 16:39, 11 October 2022 Brb talk contribs uploaded File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 07:57, 7 October 2022 Brb talk contribs created page Prediction (Created page with "= Gradient boost = * https://en.wikipedia.org/wiki/Gradient_boosting * [https://datascienceplus.com/gradient-boosting-in-r/ Gradient boosting in R] == GBDT: Gradient Boosting...")
- 14:12, 6 October 2022 Brb talk contribs created page File:Greedypairs.png
- 14:12, 6 October 2022 Brb talk contribs uploaded File:Greedypairs.png
- 11:11, 6 October 2022 Brb talk contribs uploaded a new version of File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs created page File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs created page File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot base.png
- 11:50, 30 August 2022 Brb talk contribs created page File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 11:50, 30 August 2022 Brb talk contribs uploaded File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 10:31, 30 August 2022 Brb talk contribs created page File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:31, 30 August 2022 Brb talk contribs uploaded File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:08, 30 August 2022 Brb talk contribs created page File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 10:08, 30 August 2022 Brb talk contribs uploaded File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 14:19, 29 August 2022 Brb talk contribs created page File:Rbiomirgs barall.png
- 14:19, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs barall.png
- 14:17, 29 August 2022 Brb talk contribs created page File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs created page File:Rbiomirgs volcano.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs volcano.png
- 07:08, 27 August 2022 Brb talk contribs created page File:FgseaPlotTop.png
- 07:08, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotTop.png
- 06:34, 27 August 2022 Brb talk contribs created page File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs created page File:FgseaPlotSmall.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall.png
- 06:33, 27 August 2022 Brb talk contribs created page File:FgseaPlot.png
- 06:33, 27 August 2022 Brb talk contribs uploaded File:FgseaPlot.png
- 15:02, 23 August 2022 Brb talk contribs created page File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 15:02, 23 August 2022 Brb talk contribs uploaded File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 14:19, 22 August 2022 Brb talk contribs created page File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 14:19, 22 August 2022 Brb talk contribs uploaded File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 10:21, 10 August 2022 Brb talk contribs created page File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 10:21, 10 August 2022 Brb talk contribs uploaded File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 19:55, 23 June 2022 Brb talk contribs created page File:Tidyheatmap.png
- 19:55, 23 June 2022 Brb talk contribs uploaded File:Tidyheatmap.png
- 15:22, 21 June 2022 Brb talk contribs created page File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs created page File:BatchqcDE.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcDE.png
- 15:21, 21 June 2022 Brb talk contribs created page File:BatchqcVariation.png
- 15:21, 21 June 2022 Brb talk contribs uploaded File:BatchqcVariation.png
- 15:20, 21 June 2022 Brb talk contribs created page File:BatchqcSummary.png
- 15:20, 21 June 2022 Brb talk contribs uploaded File:BatchqcSummary.png
- 20:43, 8 June 2022 Brb talk contribs created page Fstab (Created page with "* man fstab * https://help.ubuntu.com/community/Fstab ** Format: [Device] [Mount Point] [File System Type] [Options] [Dump] [Pass] ** <dump> Enable or disable backing up of th...")
- 18:02, 4 June 2022 Brb talk contribs created page File:Heatmap rdylbu.png
- 18:02, 4 June 2022 Brb talk contribs uploaded File:Heatmap rdylbu.png
- 15:02, 4 June 2022 Brb talk contribs created page Self hosting (Created page with "= Resource = * [https://github.com/mycroftwilde/portainer_templates Helpful Youtube Channels for Self-Hosting] = [http://www.proxmox.com/en/ Proxmox Virtual Environment] = *...")
- 10:06, 27 May 2022 Brb talk contribs created page File:Inter gg2.png
- 10:06, 27 May 2022 Brb talk contribs uploaded File:Inter gg2.png
- 09:51, 27 May 2022 Brb talk contribs created page File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs created page File:Inter base.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter base.png
- 09:16, 27 May 2022 Brb talk contribs uploaded a new version of File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs created page File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs uploaded File:Inter base.svg
- 10:08, 26 May 2022 Brb talk contribs created page File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 10:08, 26 May 2022 Brb talk contribs uploaded File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 13:35, 16 May 2022 Brb talk contribs created page Batch effect (Created page with "= Merging two gene expression studies, ComBat = * [https://www.coursera.org/lecture/statistical-genomics/module-2-overview-1-12-cbqYZ Statistics for Genomic Data Science] (Cou...")
- 12:56, 10 May 2022 Brb talk contribs created page File:ColorRampBlueRed.png
- 12:56, 10 May 2022 Brb talk contribs uploaded File:ColorRampBlueRed.png
- 09:34, 30 April 2022 Brb talk contribs created page Docker Applications (Created page with "[https://kuonsam.miraheze.org/wiki/Setting_Up_a_Docker_Server#Install_Docker-compose Setting Up a Docker Server] (host OS is CentOS) = Dockerizing Compiled Software = https:/...")
- 19:39, 24 March 2022 Brb talk contribs created page File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:39, 24 March 2022 Brb talk contribs uploaded File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs created page File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs uploaded File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 14:13, 18 March 2022 Brb talk contribs created page File:SnrVScor.png
- 14:13, 18 March 2022 Brb talk contribs uploaded File:SnrVScor.png
- 14:10, 18 March 2022 Brb talk contribs created page File:CorVSsnr.svg
- 14:10, 18 March 2022 Brb talk contribs uploaded File:CorVSsnr.svg
- 19:22, 14 March 2022 Brb talk contribs created page Filesystem (Created page with "= squashfs = '''squashfs''' is a heavy-compression based read-only filesystem that is capable of compressing 2 to 3 GB of data onto a 700MB. Linux liveCD are built using squas...")
- 14:15, 5 March 2022 Brb talk contribs created page File:AntiX21 mmedia.png
- 14:15, 5 March 2022 Brb talk contribs uploaded File:AntiX21 mmedia.png
- 17:23, 22 February 2022 WikiSysop talk contribs blocked Dli7319 talk contribs with an expiration time of indefinite (account creation disabled)
- 17:22, 22 February 2022 WikiSysop talk contribs blocked GraphViz talk contribs with an expiration time of indefinite (account creation disabled)
- 17:21, 22 February 2022 WikiSysop talk contribs blocked Unsightlyskit66 talk contribs with an expiration time of indefinite (account creation disabled)
- 17:20, 22 February 2022 WikiSysop talk contribs blocked Tangiblealloy75 talk contribs with an expiration time of indefinite (account creation disabled)
- 16:24, 22 February 2022 WikiSysop talk contribs blocked Akymylaz talk contribs with an expiration time of indefinite (account creation disabled)
- 03:37, 22 February 2022 User account Akymylaz talk contribs was created
- 15:12, 9 February 2022 Brb talk contribs created page Cancer (Created page with "= 癌症 Cancer = * [https://1drv.ms/u/s!Am92ICmSSQXujWZnlGy0JJjK1Gj6 生活中9種引發癌症最危險的因子] * [https://health.udn.com/health/story/6008/3053686 用手...")
- 22:31, 2 February 2022 Brb talk contribs created page File:WewatchJetsonnano-min.png
- 22:31, 2 February 2022 Brb talk contribs uploaded File:WewatchJetsonnano-min.png
- 10:17, 29 January 2022 Brb talk contribs created page Regression (Created page with "= Linear Regression = * [https://leanpub.com/regmods Regression Models for Data Science in R] by Brian Caffo * [https://avehtari.github.io/ROS-Examples/ Regression and Other S...")
- 17:04, 22 January 2022 172.70.134.227 talk created page Wine (Created page with "<ul> <li>[https://askubuntu.com/a/999295 How to run exe file in Ubuntu] <pre> sudo apt-get install wine wine dir/WAV2RAW.exe </pre> </li> <li>[https://www.linuxuprising.com/20...")
- 23:50, 16 January 2022 User account Unsightlyskit66 talk contribs was created
- 06:15, 12 January 2022 User account Tangiblealloy75 talk contribs was created
- 15:13, 29 December 2021 Brb talk contribs created page Eink (Created page with "* https://twitter.com/hashtag/epaper * https://github.com/topics/eink * [https://www.raspberrypi.org/blog/using-e-ink-raspberry-pi/ Using E Ink displays with a Raspberry Pi] *...")
- 10:33, 19 December 2021 Brb talk contribs created page Tidymodels (Created page with "= Tidymodels and tune = * [https://cran.r-project.org/web/packages/tidymodels/index.html tidymodels], [https://cran.r-project.org/web/packages/tune/index.html tune] * https://...")
- 14:28, 14 December 2021 Brb talk contribs created page Venn diagram (Created page with "* [https://cran.r-project.org/web/packages/eulerr/index.html eulerr] package * [https://codingenes.wordpress.com/2013/09/30/visualization-biological-data-using-proportional-ve...")
- 11:12, 27 November 2021 Brb talk contribs created page Remote desktop (Created page with "= x11vnc = * [https://www.makeuseof.com/install-ubuntu-vnc-server-linux/ How to Install and Run a VNC Server on Ubuntu Linux] 2021 [https://www.cloudsavvyit.com/7725/how-to-co...")
- 10:45, 27 November 2021 Brb talk contribs created page Chroot (Created page with "* https://help.ubuntu.com/community/BasicChroot * https://help.ubuntu.com/community/DebootstrapChroot * http://www.thegeekstuff.com/2010/01/debootstrap-minimal-debian-ubuntu-i...")
- 10:11, 17 November 2021 Brb talk contribs created page File:Atnormalize.png
- 10:11, 17 November 2021 Brb talk contribs uploaded File:Atnormalize.png
- 09:41, 22 October 2021 Brb talk contribs created page Jetson (Created page with "Jetson nano https://www.nvidia.com/en-us/autonomous-machines/embedded-systems/jetson-nano/ * [https://youtu.be/4cftyAq_J9g Now One Of The BEST SBCs For Emulation Project ARES...")
- 10:31, 11 October 2021 Brb talk contribs created page Linux Distribution (Created page with "== Run from RAM == [https://en.wikipedia.org/wiki/List_of_Linux_distributions_that_run_from_RAM List of Linux distributions that run from RAM] == Linux Distro for Your Cloud...")