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Exec=sh "/home/brb/.conky/conky-startup.sh" brb@brb-VirtualBox:~$ cat .conky/conky-startup.sh

/home/brb/.rustup /home/brb/.cargo

brb@biolinux[brb] ls Desktop/Sample\ Data/... brb@biolinux[brb] ls Desktop/Sample\ Data/fasta/...

...ools|BRB-ArrayTools]]||style="width: 20%; border-width: 0px;"|[[Arraytools|BRB-ArrayTools]]||style="width: 5%; border-width: 0px;"|[[File:linux48.png|link

su brb # brb is my root user in the host system that can invoke the schroot program

brb@ubuntu16041:~$ gpg --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 gpg: directory `/home/brb/.gnupg' created

# Original data dir: /home/brb/Downloads/hmv_arc # CVS dir on server (CVSROOT): /home/brb/cvsrep

export HADOOP_INSTALL=/home/brb/hadoop-2.4.1

# /home/brb/.rvm/bin/rvm # /home/brb/.rvm/rubies/ruby-2.1.4/bin/gem

brb@T3600 ~ $ apt-cache showpkg avfs brb@T3600 ~/Downloads $ time ls ~/.avfs/$PWD/Homo_sapiens_UCSC_hg19.tar.gz#/

== BRB-ArrayTools == RSeval(cc, quote(cat(ls(), file = "C:/Users/brb/Documents/out.txt")))

30G /home/brb/Rmirror 28G /home/brb/Rmirror/Bioc

[brb] path = /home/brb

brb@vm-1404:~$ sudo dpkg -l | grep openssl brb@vm-1404:~$ lsb_release -a

brb@brb-P45T-A:~/Downloads$ node

Wiki for [https://linus.nci.nih.gov/seqtools/ BRB-SeqTools]. Like Galaxy, BRB-SeqTools is not a method. ...Reboot Windows to make this change to work. It also helps to download the BRB-SeqTools icon (read below).

-rw-r--r-- 1 brb brb 198M May 15 09:11 biotrip_0.1.0_may19.tar.gz -rw-rw-r-- 1 brb brb 195M May 14 16:57 biotrip_0.1.0.tar.gz

== Release timeline for BRB-ArrayTools == == Release timeline for BRB-SeqTools ==

In BRB-ArrayTools plugins (see the last COMMANDS block in a .plug file), the follo In BRB-Arraytools export plugins, the following objects are exported,

...e path of '''npm install --global''' is still in my home directory ''/home/brb/.nvm/versions/node/v18.17.0/bin''. If I use '''export $PATH''', I can see t npm: /usr/bin/npm /home/brb/.nvm/versions/node/v15.4.0/bin/npm

brb@brb-P45T-A:~$ netstat -rn brb@vm-1404:~$ netstat -rn

<value>file:///home/brb/Downloads/hbase-0.98.3-hadoop2/hbase</value> <value>/home/brb/Downloads/hbase-0.98.3-hadoop2/zookeeper</value>

rsync -av "/cygdrive/c/Users/brb/.ssh/id_rsa.pub" [email protected]:.ssh/authorized_keys rsync -av "/cygdrive/c/Users/brb/Downloads/cytokineMC.txt" [email protected]:Downloads/

brb@brb-P45T-A:~/github/SIK$ git remote brb@brb-P45T-A:~/github/SIK$ git remote -v

[sudo] password for brb:

[sudo] password for brb: [sudo] password for brb: 2019-07-21 10:35:41 URL:https://download.calibre-ebook.com/linux-installer

...] .''' See also my [[Seqtools|Wiki]] for [https://brb.nci.nih.gov/seqtools BRB-SeqTools]. === [[File:ArrayTools GUI.png|100px]] BRB-ArrayTools graphical user interface ===

brb@ubuntu1804:~/Downloads$ sudo apt install mupdf brb@ubuntu1804:~/Downloads$ ps aux | grep -i apt

...ello_world_program_examples#H index.html]> in the current directory (/home/brb/Downloads/) Server started at port no. 50002 with root directory as /home/brb/Downloads

/home/brb/github/PUREE/myenv/bin/python rootdir: /home/brb/github/DeepSurv, inifile:

C:\Users\brb>ping fe80::a00:27ff:fecb:966c C:\Users\brb>netstat -rn

brb@brbweb4:~$ mkdir Anders2013 brb@brbweb4:~$ cd Anders2013

$ ssh brb@192.168.86.86 ...lic key to a remote host ([email protected]) over ssh. The current user (eg brb) and the remote user (eg git)have not any relationship (they most likely ha

-v /home/brb/Videos/:/usr/local/apache2/htdocs/ \ drwxrwxr-x 3 brb brb 4096 Jul 10 09:23 db

lrwxrwxrwx 1 brb brb 22 Mar 10 03:40 genome.fa -> version0.6.0/genome.fa lrwxrwxrwx 1 brb brb 26 Mar 10 03:37 genome.fa.amb -> version0.6.0/genome.fa.amb

brb@brb-P45T-A:~/Downloads$ ls /media/BEAGLE_BONE/ brb@brb-P45T-A:~/Downloads$ ls /media/rootfs/

$ '/home/brb/binary/arduino-1.6.9/install.sh' brb@brb-P45T-A:~$ ls -lt /dev | more

Removing package from ‘/home/brb/R/x86_64-pc-linux-gnu-library/4.2’ # untar("~/Downloads/inSilicoDb_2.7.0.tar.gz", exdir="/home/brb/Downloads")

declare -x HOME="/home/brb" declare -x LOGNAME="brb"

$ dd if=/dev/zero of=/media/brb/My\ Passport/test1.img bs=2G count=1 [sudo] password for brb:

nano -c /media/brb/KOBOeReader/.kobo/koreader/frontend/ui/uimanager.lua brb@brb-P45T-A:~$ ls -la /media/brb/KOBOeReader/

df -h # find /media/brb/data1 partition brb@brb-P45T-A:~/Downloads/gapps$

$ ls '/media/brb/retropie/home/pi/' $ ls '/media/brb/retropie/home/pi/RetroPie/'

WARNING: The script krop is installed in '/home/brb/.local/bin' which is not on PATH.

[sudo] password for brb: gpg: WARNING: unsafe ownership on homedir '/home/brb/.gnupg'

Success! Added /home/brb/.local/bin to the PATH environment variable. brb@T3600 ~ $ ls -l ~/GSE48215/*.fastq

...d the zip file and extract it to my Download folder. Then I added C:\Users\brb\Downloads\jom_1_1_0 to PATH variable. brb@xenial:~$ lsb_release -a

set PATH=%PATH%;C:\Users\brb\Downloads\R-3.2.2\bin\i386;c:\windows;c:\windows\system32 cp -R c:\R64\Tcl c:\Users\brb\Downloads\R-3.2.2

# add export PATH=$PATH:/home/brb/.local/bin

[sudo] password for brb:

Snapshot written to '/home/brb/projects/babynames/packrat/packrat.lock' /home/brb/projects/babynames/packrat/

std::string string("/home/brb/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/BWAIndex/"); /home/brb/igenomes/Homo_sapiens/Ensembl/GRCh38/Sequence/BWAIndex/

tlmgr: package log updated: /home/brb/.TinyTeX/texmf-var/web2c/tlmgr.log TinyTeX installed to /home/brb/.TinyTeX

$ ls -l /media/brb/SamsungUSB/ $ md5sum '/media/brb/SamsungUSB/macSierra.ova'

mkdir -p /home/brb/Sites/graphs chmod a+wx /home/brb/Sites/graphs

sudo dd if=/dev/zero of=/media/brb/USB\ STICK/test.img bs=100M count=1 oflag=dsync sudo dd if=/dev/zero of=/media/brb/USB\ STICK/test.img bs=100M count=10 oflag=dsync

== BRB-SeqTools == https://brb.nci.nih.gov/seqtools/

xfreerdp -u brb -x l -z 192.168.1.4 rdesktop -f -u brb 192.168.1.4

(trusty)brb@localhost:~$ sudo dpkg -i '/tmp/mozilla_brb0/rstudio-1.0.44-amd64.deb'

....bashrc to include 'export PATH=$PATH:/usr/java/jdk1.8.0_112'. After that, BRB-SeqTools works fine. C:\Program Files\R>c:\users\brb\Desktop\datetime.bat

* $wgSitename = "BRB-ArrayTools";

export R_HOME=/home/brb/Downloads/R-3.0.2 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/brb/Downloads/R-3.0.2/lib

(trusty)brb@localhost:~$ locale

/home/brb/singularity/nginx/default.conf /etc/nginx/conf.d/default.conf

See also [[Arraytools#GSEA|BRB-ArrayTools -> GSEA]].

...histograms of p-values and FDR (BH adjusted) from a real data (Pomeroy in BRB-ArrayTools). * [https://brb.nci.nih.gov/techreport/TechReport_Molinaro.pdf Prediction Error Estimation:

In the dynamic heatmap tool of BRB-ArrayTools, the missing data is represented by the gray color.