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  • File:QHeatmapScreenShot2.png
    BRB-ArrayTools.
    (1,920 × 1,040 (168 KB)) - 12:46, 3 August 2016
  • Conky
    Exec=sh "/home/brb/.conky/conky-startup.sh" brb@brb-VirtualBox:~$ cat .conky/conky-startup.sh
    2 KB (345 words) - 22:27, 5 February 2024
  • Rust
    /home/brb/.rustup /home/brb/.cargo
    2 KB (306 words) - 16:21, 3 January 2021
  • Biolinux
    brb@biolinux[brb] ls Desktop/Sample\ Data/... brb@biolinux[brb] ls Desktop/Sample\ Data/fasta/...
    3 KB (389 words) - 21:56, 14 August 2019
  • Main Page
    ...ools|BRB-ArrayTools]]||style="width: 20%; border-width: 0px;"|[[Arraytools|BRB-ArrayTools]]||style="width: 5%; border-width: 0px;"|[[File:linux48.png|link
    1 KB (144 words) - 20:51, 6 July 2022
  • File:Igv gse11209 junction.png
    The data is from BRB-SeqTools tutorial data GSE11209/dT_ori.
    (1,485 × 953 (29 KB)) - 16:33, 15 March 2017
  • Chroot
    su brb # brb is my root user in the host system that can invoke the schroot program
    2 KB (341 words) - 20:05, 15 May 2023
  • Ubuntu software repository
    brb@ubuntu16041:~$ gpg --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 gpg: directory `/home/brb/.gnupg' created
    11 KB (1,516 words) - 08:43, 19 August 2022
  • CVS
    # Original data dir: /home/brb/Downloads/hmv_arc # CVS dir on server (CVSROOT): /home/brb/cvsrep
    9 KB (1,471 words) - 13:27, 15 October 2019
  • Hadoop
    export HADOOP_INSTALL=/home/brb/hadoop-2.4.1
    1 KB (180 words) - 09:56, 16 July 2014
  • Ruby
    # /home/brb/.rvm/bin/rvm # /home/brb/.rvm/rubies/ruby-2.1.4/bin/gem
    3 KB (484 words) - 17:11, 24 November 2019
  • Extract files
    brb@T3600 ~ $ apt-cache showpkg avfs brb@T3600 ~/Downloads $ time ls ~/.avfs/$PWD/Homo_sapiens_UCSC_hg19.tar.gz#/
    10 KB (1,361 words) - 09:56, 15 February 2022
  • Rserve
    == BRB-ArrayTools == RSeval(cc, quote(cat(ls(), file = "C:/Users/brb/Documents/out.txt")))
    5 KB (761 words) - 16:54, 7 June 2020
  • R repository
    30G /home/brb/Rmirror 28G /home/brb/Rmirror/Bioc
    17 KB (2,447 words) - 10:17, 10 May 2020
  • Samba
    [brb] path = /home/brb
    13 KB (1,879 words) - 17:13, 9 October 2023
  • SSL
    brb@vm-1404:~$ sudo dpkg -l | grep openssl brb@vm-1404:~$ lsb_release -a
    11 KB (1,370 words) - 09:52, 17 June 2022
  • Node.js
    brb@brb-P45T-A:~/Downloads$ node
    8 KB (1,150 words) - 09:24, 29 July 2023
  • Seqtools
    Wiki for [https://linus.nci.nih.gov/seqtools/ BRB-SeqTools]. Like Galaxy, BRB-SeqTools is not a method. ...Reboot Windows to make this change to work. It also helps to download the BRB-SeqTools icon (read below).
    19 KB (2,682 words) - 16:41, 20 October 2022
  • Curl
    -rw-r--r-- 1 brb brb 198M May 15 09:11 biotrip_0.1.0_may19.tar.gz -rw-rw-r-- 1 brb brb 195M May 14 16:57 biotrip_0.1.0.tar.gz
    18 KB (2,498 words) - 12:33, 10 February 2024
  • ATdeveloper
    == Release timeline for BRB-ArrayTools == == Release timeline for BRB-SeqTools ==
    25 KB (2,959 words) - 01:10, 4 April 2024
  • Naming
    In BRB-ArrayTools plugins (see the last COMMANDS block in a .plug file), the follo In BRB-Arraytools export plugins, the following objects are exported,
    10 KB (1,440 words) - 10:41, 10 May 2024
  • Javascript
    ...e path of '''npm install --global''' is still in my home directory ''/home/brb/.nvm/versions/node/v18.17.0/bin''. If I use '''export $PATH''', I can see t npm: /usr/bin/npm /home/brb/.nvm/versions/node/v15.4.0/bin/npm
    11 KB (1,617 words) - 10:45, 12 March 2024
  • Centos
    brb@brb-P45T-A:~$ netstat -rn brb@vm-1404:~$ netstat -rn
    25 KB (3,122 words) - 08:21, 8 May 2023
  • MySQL
    <value>file:///home/brb/Downloads/hbase-0.98.3-hadoop2/hbase</value> <value>/home/brb/Downloads/hbase-0.98.3-hadoop2/zookeeper</value>
    47 KB (6,035 words) - 09:40, 6 July 2023
  • Backup
    rsync -av "/cygdrive/c/Users/brb/.ssh/id_rsa.pub" [email protected]:.ssh/authorized_keys rsync -av "/cygdrive/c/Users/brb/Downloads/cytokineMC.txt" [email protected]:Downloads/
    20 KB (2,714 words) - 22:35, 21 March 2024
  • Github
    brb@brb-P45T-A:~/github/SIK$ git remote brb@brb-P45T-A:~/github/SIK$ git remote -v
    144 KB (20,934 words) - 18:24, 11 May 2024
  • Snappy
    [sudo] password for brb:
    12 KB (1,604 words) - 13:57, 12 May 2024
  • Calibre
    [sudo] password for brb: [sudo] password for brb: 2019-07-21 10:35:41 URL:https://download.calibre-ebook.com/linux-installer
    23 KB (3,157 words) - 09:12, 15 April 2024
  • Arraytools
    ...] .''' See also my [[Seqtools|Wiki]] for [https://brb.nci.nih.gov/seqtools BRB-SeqTools]. === [[File:ArrayTools GUI.png|100px]] BRB-ArrayTools graphical user interface ===
    97 KB (14,849 words) - 09:36, 13 February 2024
  • Ubuntu package
    brb@ubuntu1804:~/Downloads$ sudo apt install mupdf brb@ubuntu1804:~/Downloads$ ps aux | grep -i apt
    36 KB (4,769 words) - 13:41, 12 May 2024
  • R web
    ...ello_world_program_examples#H index.html]> in the current directory (/home/brb/Downloads/) Server started at port no. 50002 with root directory as /home/brb/Downloads
    42 KB (5,717 words) - 06:34, 27 March 2024
  • Python
    /home/brb/github/PUREE/myenv/bin/python rootdir: /home/brb/github/DeepSurv, inifile:
    94 KB (12,933 words) - 14:40, 7 May 2024
  • Virtualbox
    C:\Users\brb>ping fe80::a00:27ff:fecb:966c C:\Users\brb>netstat -rn
    70 KB (9,776 words) - 13:36, 15 May 2024
  • Anders2013
    brb@brbweb4:~$ mkdir Anders2013 brb@brbweb4:~$ cd Anders2013
    152 KB (19,200 words) - 18:29, 14 May 2024
  • Ssh
    $ ssh brb@192.168.86.86 ...lic key to a remote host ([email protected]) over ssh. The current user (eg brb) and the remote user (eg git)have not any relationship (they most likely ha
    48 KB (6,776 words) - 20:09, 27 April 2024
  • NGS
    lrwxrwxrwx 1 brb brb 22 Mar 10 03:40 genome.fa -> version0.6.0/genome.fa lrwxrwxrwx 1 brb brb 26 Mar 10 03:37 genome.fa.amb -> version0.6.0/genome.fa.amb
    175 KB (23,482 words) - 11:35, 15 August 2023
  • Docker Applications
    -v /home/brb/Videos/:/usr/local/apache2/htdocs/ \ drwxrwxr-x 3 brb brb 4096 Jul 10 09:23 db
    71 KB (9,632 words) - 20:56, 12 May 2024
  • Beaglebone
    brb@brb-P45T-A:~/Downloads$ ls /media/BEAGLE_BONE/ brb@brb-P45T-A:~/Downloads$ ls /media/rootfs/
    97 KB (13,194 words) - 12:10, 7 March 2020
  • Arduino
    $ '/home/brb/binary/arduino-1.6.9/install.sh' brb@brb-P45T-A:~$ ls -lt /dev | more
    57 KB (7,883 words) - 10:49, 16 January 2023
  • R packages
    Removing package from ‘/home/brb/R/x86_64-pc-linux-gnu-library/4.2’ # untar("~/Downloads/inSilicoDb_2.7.0.tar.gz", exdir="/home/brb/Downloads")
    154 KB (20,177 words) - 18:52, 16 May 2024
  • Linux Programming
    declare -x HOME="/home/brb" declare -x LOGNAME="brb"
    104 KB (14,867 words) - 13:32, 9 April 2024
  • Benchmark
    $ dd if=/dev/zero of=/media/brb/My\ Passport/test1.img bs=2G count=1 [sudo] password for brb:
    32 KB (4,254 words) - 20:58, 23 April 2024
  • Udoo
    df -h # find /media/brb/data1 partition brb@brb-P45T-A:~/Downloads/gapps$
    46 KB (6,721 words) - 11:58, 17 November 2023
  • Hardware
    nano -c /media/brb/KOBOeReader/.kobo/koreader/frontend/ui/uimanager.lua brb@brb-P45T-A:~$ ls -la /media/brb/KOBOeReader/
    160 KB (22,209 words) - 13:19, 12 May 2024
  • RetroPie
    $ ls '/media/brb/retropie/home/pi/' $ ls '/media/brb/retropie/home/pi/RetroPie/'
    87 KB (12,645 words) - 20:46, 11 May 2024
  • PDF
    WARNING: The script krop is installed in '/home/brb/.local/bin' which is not on PATH.
    20 KB (3,015 words) - 09:32, 17 September 2023
  • Docker
    [sudo] password for brb: gpg: WARNING: unsafe ownership on homedir '/home/brb/.gnupg'
    173 KB (23,525 words) - 17:17, 8 May 2024
  • Linux
    Success! Added /home/brb/.local/bin to the PATH environment variable. brb@T3600 ~ $ ls -l ~/GSE48215/*.fastq
    199 KB (27,970 words) - 13:41, 7 May 2024
  • Qt
    ...d the zip file and extract it to my Download folder. Then I added C:\Users\brb\Downloads\jom_1_1_0 to PATH variable. brb@xenial:~$ lsb_release -a
    171 KB (22,523 words) - 17:16, 29 February 2020
  • Install R
    set PATH=%PATH%;C:\Users\brb\Downloads\R-3.2.2\bin\i386;c:\windows;c:\windows\system32 cp -R c:\R64\Tcl c:\Users\brb\Downloads\R-3.2.2
    68 KB (9,578 words) - 10:38, 8 May 2024
  • Youtube
    # add export PATH=$PATH:/home/brb/.local/bin
    27 KB (3,584 words) - 15:24, 9 April 2024
  • Motioneye
    [sudo] password for brb:
    21 KB (3,167 words) - 13:51, 17 May 2024
  • C
    std::string string("/home/brb/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/BWAIndex/"); /home/brb/igenomes/Homo_sapiens/Ensembl/GRCh38/Sequence/BWAIndex/
    212 KB (30,105 words) - 20:55, 16 May 2022
  • Rmarkdown
    tlmgr: package log updated: /home/brb/.TinyTeX/texmf-var/web2c/tlmgr.log TinyTeX installed to /home/brb/.TinyTeX
    80 KB (11,030 words) - 16:23, 17 May 2024
  • Reproducible
    Snapshot written to '/home/brb/projects/babynames/packrat/packrat.lock' /home/brb/projects/babynames/packrat/
    65 KB (9,289 words) - 21:19, 17 May 2024
  • Mac
    $ ls -l /media/brb/SamsungUSB/ $ md5sum '/media/brb/SamsungUSB/macSierra.ova'
    178 KB (24,865 words) - 14:00, 17 May 2024
  • Apache
    mkdir -p /home/brb/Sites/graphs chmod a+wx /home/brb/Sites/graphs
    83 KB (10,956 words) - 17:42, 6 April 2024
  • Ubuntu
    sudo dd if=/dev/zero of=/media/brb/USB\ STICK/test.img bs=100M count=1 oflag=dsync sudo dd if=/dev/zero of=/media/brb/USB\ STICK/test.img bs=100M count=10 oflag=dsync
    186 KB (25,993 words) - 10:16, 10 April 2024
  • Genome
    == BRB-SeqTools == https://brb.nci.nih.gov/seqtools/
    301 KB (39,517 words) - 14:35, 13 May 2024
  • Raspberry
    xfreerdp -u brb -x l -z 192.168.1.4 rdesktop -f -u brb 192.168.1.4
    188 KB (25,426 words) - 21:40, 9 April 2024
  • Rstudio
    (trusty)brb@localhost:~$ sudo dpkg -i '/tmp/mozilla_brb0/rstudio-1.0.44-amd64.deb'
    48 KB (6,785 words) - 21:58, 17 May 2024
  • Windows
    ....bashrc to include 'export PATH=$PATH:/usr/java/jdk1.8.0_112'. After that, BRB-SeqTools works fine. C:\Program Files\R>c:\users\brb\Desktop\datetime.bat
    107 KB (13,765 words) - 09:10, 8 May 2024
  • Mediawiki
    * $wgSitename = "BRB-ArrayTools";
    53 KB (7,552 words) - 13:21, 14 April 2024
  • R
    export R_HOME=/home/brb/Downloads/R-3.0.2 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/brb/Downloads/R-3.0.2/lib
    337 KB (46,296 words) - 10:03, 7 May 2024
  • Chrome
    (trusty)brb@localhost:~$ locale
    57 KB (7,527 words) - 20:56, 23 April 2024
  • Biowulf
    /home/brb/singularity/nginx/default.conf /etc/nginx/conf.d/default.conf
    48 KB (6,907 words) - 12:29, 15 May 2024
  • GSEA
    See also [[Arraytools#GSEA|BRB-ArrayTools -> GSEA]].
    60 KB (8,292 words) - 13:49, 9 May 2024
  • Statistics
    ...histograms of p-values and FDR (BH adjusted) from a real data (Pomeroy in BRB-ArrayTools). * [https://brb.nci.nih.gov/techreport/TechReport_Molinaro.pdf Prediction Error Estimation:
    194 KB (25,708 words) - 09:23, 21 April 2024
  • Heatmap
    In the dynamic heatmap tool of BRB-ArrayTools, the missing data is represented by the gray color.
    92 KB (12,235 words) - 11:52, 18 January 2024
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