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File:Cvglmnetplot.png set.seed(1) # [1] 39(1,000 × 400 (34 KB)) - 17:56, 11 October 2022File:Polygon.png plot(c(1, 9), 1:2, type = "n") polygon(1:9, c(2,1,2,1,NA,2,1,2,1),(577 × 577 (30 KB)) - 17:31, 23 April 2024File:Logscale.png > plot(c(1, 10, 100), c(1, 10, 100), log="y") > log10(c(1, 10, 100))(480 × 480 (4 KB)) - 13:58, 1 May 2020File:Jitterbox.png assy <- LETTERS[1:nc] set.seed(1)(1,020 × 906 (50 KB)) - 22:53, 8 February 2024File:Reorder.dendrogram.png par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20)(814 × 600 (10 KB)) - 12:15, 8 January 2023File:ViridisDefault.png 1:n, 1, as.matrix(1:n),(600 × 200 (2 KB)) - 10:31, 30 August 2022File:Twopalette.svg par(mfrow=c(1,2), mar = c(5,2,2,1)) plot(1:8, col=brewer_pal(palette = "Blues")(8), pch=20, cex=4)(468 × 468 (43 KB)) - 16:09, 12 April 2019File:Methybetavsm.png mydf = data.frame(beta=seq(0,1,length=100), m=log2(seq(0,1,len=100)/(1-seq(0,1,len=100))))(480 × 480 (3 KB)) - 10:21, 30 July 2015File:Scatterhist.svg zones=matrix(c(2,0,1,3), ncol=2, byrow=TRUE) layout(zones, widths=c(4/5,1/5), heights=c(1/5,4/5))(563 × 563 (70 KB)) - 10:22, 16 February 2024File:Rpalette.png # [1] "black" "#DF536B" "#61D04F" "#2297E6" "#28E2E5" "#CD0BBC" "#F5C710" pal_matrix <- matrix(seq_along(pal), nr=1)(534 × 615 (28 KB)) - 11:08, 10 May 2023File:Rainbow default.png sliderInput("s_value", "Saturation (s):", min = 0, max = 1, value = 1, step = 0.01), sliderInput("v_value", "Value (v):", min = 0, max = 1, value = 1, step = 0.01)(2,044 × 1,182 (426 KB)) - 08:52, 12 March 2024File:Roc asah.png par(mfrow=c(1,2)) par(mfrow=c(1,1))(1,024 × 535 (38 KB)) - 15:59, 22 August 2023File:DataOutliers.png plot(puree[,1], puree[, 2], xlim=c(0,1), ylim=c(0,1), xlab="X", ylab="Y") abline(0,1, lty=2)(1,020 × 1,096 (172 KB)) - 15:27, 7 March 2024File:Dend12.png # [1] 8 3 6 5 10 1 9 7 2 4 # Rotate the branches (1,9) & (7,2,4)(876 × 448 (11 KB)) - 13:17, 13 August 2023File:Rotateheatmap.png rownames(mat) = paste0("R", 1:8) colnames(mat) = paste0("C", 1:10)(1,314 × 448 (52 KB)) - 14:44, 13 August 2023File:Geomerrorbarh.png trt = factor(c("Treatment 1", "Treatment 2", "Treatment 3", "Treatment 4", "Treatment 5")), # treatment resp = c(1, 5, 3, 4, 2), # response(516 × 400 (17 KB)) - 20:38, 15 October 2023File:SnrVScor.png tibble(snr = seq(1,40)) %>% mutate(cor=sqrt(snr)/sqrt(snr+1)) %>%(483 × 443 (20 KB)) - 14:15, 18 March 2022File:ComplexHeatmap2.png set.seed(1) colnames(mat) <- 1:ns(800 × 600 (43 KB)) - 21:37, 7 January 2023File:ScaleFillViridisDiscrete.png x <- LETTERS[1:20] y <- paste0("var", seq(1,20))(600 × 471 (22 KB)) - 10:08, 30 August 2022File:GseaTable2.png fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # 1: -0.4050950 1.0000000(800 × 600 (81 KB)) - 12:18, 12 January 2023- <span class="texhtml mvar" style="font-style:italic;">{{{1}}}</span><noinclude>92 bytes (10 words) - 08:42, 7 September 2018
- ...a season, and a time to every purpose under the heaven. 傳道書 Ecclesiastes 3:1-8 ...ould be quick to listen, slow to speak and slow to become angry.'' - James 1:19401 bytes (57 words) - 09:19, 20 October 2018
File:Filtered p.png # Each curve represents theta (filtering threshold). For example, theta=.1 means 10% of genes are filtered out before we do multiple testing (or BH ad #* if theta=0, 251 hypotheses are rejected at FDR=.1(1,020 × 1,096 (171 KB)) - 21:35, 11 March 2024- ...ps://ruslanspivak.com/lsbasi-part1/ Let’s Build A Simple Interpreter. Part 1]83 bytes (11 words) - 09:28, 4 March 2018
File:Filtered R mean.png # 10% <---- so theta=0.1 is the optimal; only 10% genes are removed # [1] 270(1,020 × 1,096 (68 KB)) - 20:17, 12 March 2024File:RbdBlock.png block <- as.factor(rep(1:5, each=6)) random_effect <- rnorm(30, mean = 0, sd = 1)(500 × 500 (34 KB)) - 21:51, 14 January 2023File:RbdTreat.png block <- as.factor(rep(1:5, each=6)) random_effect <- rnorm(30, mean = 0, sd = 1)(500 × 500 (32 KB)) - 21:50, 14 January 2023File:Geom boxplot.png ggplot(data.frame(x), aes(1, x)) + geom_boxplot()(436 × 536 (14 KB)) - 16:02, 25 November 2019File:Geom bar2.png y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1)(2,400 × 1,800 (71 KB)) - 14:41, 15 December 2022File:Geom bar1.png y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1)(2,400 × 1,800 (85 KB)) - 14:39, 15 December 2022File:KMannotation.png # [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] # status 1 1 0 1 1 0 1 1 0 1 0(732 × 546 (58 KB)) - 22:12, 13 October 2020- g1(μx, μy) = ∂g/∂X̄ = 1/X̄, g2(μx, μy) = ∂g/∂Ȳ = -1/Ȳ .../\mu_x)^2 * Var(\bar{X}) + (-1/\mu_y)^2 * Var(\bar{Y}) + 2 * (1/\mu_x) * (-1/\mu_y) * Cov(\bar{X}, \bar{Y}) \\2 KB (339 words) - 21:03, 5 August 2023
File:IGV fly Anders2013 2.png Note that a position may contain more than 1 transcript.(1,033 × 854 (102 KB)) - 14:50, 21 May 2015File:Geom bar4.png color = "grey", linetype = "dashed", size = 1) +(2,400 × 1,800 (51 KB)) - 15:14, 15 December 2022File:ComplexHeatmap1.png rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n)(600 × 450 (29 KB)) - 15:02, 23 August 2022File:DataOutliers2.png plot(puree[,1], puree[, 2], xlab="X", ylab="Y") col = c("black", "blue", "red", "cyan", "green"), lty=1, lwd=2)(1,020 × 1,096 (133 KB)) - 16:49, 8 March 2024File:KMcurve.png # https://www.rdocumentation.org/packages/survival/versions/3.1-12/topics/print.survfit 1 Maintained 45(672 × 671 (6 KB)) - 16:15, 30 April 2020File:Svg4.svg plot(1:10, main="width=4, height=4")(360 × 360 (33 KB)) - 16:58, 17 March 2023File:Palettebarplot.png barplot(rep(1, length(pal)), col = pal, space = 0,(534 × 615 (9 KB)) - 11:15, 10 May 2023File:R2.png # [1] 0.8554949(500 × 400 (15 KB)) - 13:46, 21 May 2023File:Venn4.png x <- list(First = 1:40, Second = 15:60, Third = sample(25:50, 25),(982 × 1,168 (103 KB)) - 14:49, 23 April 2024File:Rerrorbar.svg geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") +(609 × 328 (75 KB)) - 19:37, 24 March 2022File:Rerrorbars.png geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") +(593 × 418 (10 KB)) - 19:39, 24 March 2022File:LogisticFail.svg > set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n)(475 × 468 (25 KB)) - 10:08, 26 May 2022File:Fgsea3plots.png par(mfrow=c(1,3))(1,200 × 400 (68 KB)) - 12:37, 6 January 2023File:Filtered R.png # [1] 380 main="BH cutoff = 0.1")(1,020 × 1,096 (77 KB)) - 21:41, 11 March 2024File:Foldchangefilter.png LFC <- log2(1.5) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples")(460 × 460 (22 KB)) - 11:03, 12 October 2022- OLlist <- overLapper(setlist[1:3], type="vennsets") OLlist <- overLapper(setlist[1:3], type="vennsets")6 KB (842 words) - 11:47, 30 April 2024
File:Geomcolviridis.png pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df)(821 × 400 (26 KB)) - 11:50, 30 August 2022- ...03-24T20:50:42-0400] [ALPM] installed linux510-virtualbox-guest-modules (6.1.18-18) [2021-03-24T20:50:42-0400] [ALPM] installed virtualbox-guest-utils (6.1.18-2)7 KB (932 words) - 16:42, 28 June 2023
File:Doubledip.png set.seed(1) i1 <- i[1] ; i2 <- i[2](800 × 450 (57 KB)) - 14:19, 22 August 2022- = Operating System: From 0 to 1 =503 bytes (65 words) - 11:02, 22 March 2018
File:Progpreg.png x1 <- image_read(u[1])(800 × 1,200 (193 KB)) - 10:48, 24 September 2020File:GseaTable.png # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.955961(800 × 600 (81 KB)) - 12:01, 12 January 2023- ** [https://www.rdocumentation.org/packages/boot/versions/1.3-20/topics/boot.ci boot.ci()] from the 'boot' package provides a short exp ** https://www.rdocumentation.org/packages/boot/versions/1.3-2013 KB (1,624 words) - 13:14, 2 November 2023
File:Ruspini.png mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2))(1,000 × 550 (81 KB)) - 10:41, 10 August 2022- z = 1; \tif (i == j)\n\t\tz = 0;\n\telse\n\t\tz = 1;4 KB (560 words) - 21:50, 10 March 2021
- s$browse(1) # OR s$browse("RookTest") ...R because the command just a shortcut to open the web page http://127.0.0.1:10215/custom/RookTest.3 KB (467 words) - 15:27, 12 August 2019
- | | |_| | | | (_| | | Version 1.1.0 (2019-01-21) [1] top-level scope at none:01 KB (156 words) - 10:37, 7 April 2021
- * Power and Sample Size Determination http://www.stat.wisc.edu/~st571-1/10-power-2.pdf#page=12 ...powerandsamplesize.com/Knowledge/derive-z-test-1-sample-1-sided One-sample 1-sided test], [http://www.cyclismo.org/tutorial/R/power.html#calculating-the11 KB (1,382 words) - 10:25, 14 November 2023
- # [1] 28109 # [1] 1115 KB (1,636 words) - 10:30, 15 November 2023
- ...ns(error=function() { traceback(2); if(!interactive()) quit("no", status = 1, runLast = FALSE) }) lapply(1:3, function(i){ browser(); rnorm(i)})11 KB (1,621 words) - 13:48, 19 April 2024
- # Step 1 Find your drive names # Step 1 Create new Physical Volume9 KB (1,075 words) - 16:10, 24 February 2023
- Installed: 1.0.2g-1ubuntu4.5 Candidate: 1.0.2g-1ubuntu4.511 KB (1,370 words) - 09:52, 17 June 2022
- * http://r-exercises.com/2016/10/30/regular-expressions-part-1/ # [1] "." "\\" "|" "(" ")" "[" "]" "{" "}" "$" "-" "^" "*" "+" "?"22 KB (2,994 words) - 09:58, 27 April 2024
- ...://www.linuxuprising.com/2019/06/fix-missing-gpg-key-apt-repository.html?m=1 Fix Missing GPG Key Apt Repository Errors (NO_PUBKEY)] gpg: Total number processed: 111 KB (1,516 words) - 08:43, 19 August 2022
- #define ONE 1 printf("The list has %d item%s\n", n , n==1 ? "" : "s");10 KB (1,440 words) - 10:41, 10 May 2024
- filename=$1 ...irectory after extracting mediawiki tar ball]. "tar -xz --strip-components=1 -f mediawiki.tar.gz"10 KB (1,361 words) - 09:56, 15 February 2022
- # Step 1 - Read the design and create eset. colnames(exprs) <- targets[,1]7 KB (840 words) - 10:34, 14 May 2023
- # [1] "Blood Derived Normal" "Solid Tissue Normal" ...D dataset]. [https://www.rdocumentation.org/packages/TCGAbiolinks/versions/1.2.5/topics/TCGAquery_SampleTypes TCGAquery_SampleTypes(barcode, typesample)30 KB (2,603 words) - 13:55, 13 April 2023
- Note 1. It is OK to use the same CVSROOT for multiple modules/projects since each Note 2. The cvs version that I have installed in my ubuntu server is 1.12.13.9 KB (1,471 words) - 13:27, 15 October 2019
- * HTTP Status Code (for example, HTTP/1.1 200 OK) HTTP/1.1 200 OK2 KB (213 words) - 18:45, 27 May 2023
- * Method 1: [https://api.jquery.com/load/ .load()] from '''jquery'''2 KB (354 words) - 10:54, 22 March 2022
- s$d <- s$d/sqrt(max(1, nrow(x) - 1)) plot(pc$x[, 1], pc$x[, 2], col = group, main = "PCA", xlab = "PC1", ylab = "PC2")26 KB (3,376 words) - 16:34, 10 February 2024
- └── [email protected].1 [email protected].1: wanted: {"node":">=0.12"} (current: {"node":"v0.10.25","npm":"1.3.10"})11 KB (1,617 words) - 10:45, 12 March 2024
- * Virtual private servers starting at $5 a month (512MB memory, 1 Core, 20GB SSD, 1TB Transfer) Virtual private servers starting at $5 a month (512MB memory, 1 Core, 20GB SSD, 1TB Transfer)5 KB (676 words) - 21:34, 14 December 2023
- 127.0.0.1:6379> set name mark 127.0.0.1:6379> get name2 KB (290 words) - 14:54, 25 October 2020
- Genome variation profiling by genome tiling array 1,068 Other 1,14721 KB (2,620 words) - 15:12, 7 June 2023
- * [https://youtu.be/TlB_eWDSMt4 Node.js Tutorial for Beginners: Learn Node in 1 Hour | Mosh] # Terminal 18 KB (1,150 words) - 09:24, 29 July 2023
- <li>[https://academic.oup.com/biostatistics/article/8/1/118/252073?login=false Adjusting batch effects in microarray expression dat <li>[https://www.coursera.org/lecture/statistical-genomics/module-2-overview-1-12-cbqYZ Statistics for Genomic Data Science] (Coursera) and https://github26 KB (3,733 words) - 10:56, 24 February 2024
- ...CC) is a descriptive statistic that describes the extent to which outcomes 1) within each <span style="color: red">cluster</span> are likely to be simil * In the 3 scenario scatterplots on the wikipedia, x-axis represents rater 1 & y-axis represents rater 2. Different points represent different subjects.31 KB (4,160 words) - 14:09, 13 May 2024
- -rw-rw-r-- 1 brb brb 37 Aug 30 20:17 .conky/conky-startup.sh2 KB (345 words) - 22:27, 5 February 2024
- 1. Install the packages2 KB (341 words) - 20:05, 15 May 2023
- | 1 for i in {1..2}; do echo iteration $i; for f in *.jpg; do echo $f; \11 KB (1,630 words) - 18:12, 7 January 2024
- ...'' means that the file system should not be checked by fsck. A value of '''1''' means that the file system should be checked first (like the "/" root fi Disk /dev/sda: 640.1 GB, 640135028736 bytes5 KB (775 words) - 12:16, 8 July 2023
- ...: /usr/bin/java /usr/bin/X11/java /usr/share/java /usr/share/man/man1/java.1.gz java version "1.6.0_38"14 KB (1,929 words) - 11:23, 27 November 2021
- $ smartctl -v | head -1 Controller ID: 120 KB (2,644 words) - 07:49, 30 October 2023
- 1) Proceed with installation (default) stable installed - rustc 1.48.0 (7eac88abb 2020-11-16)2 KB (306 words) - 16:21, 3 January 2021
- clusterApply(cl, 1:2, get("+"), 3) [https://www.jottr.org/2022/04/22/parallelly-1.31.1/ parallelly 1.31.1: Better at Inferring Number of CPU Cores with Cgroups and Linux Containers]36 KB (4,681 words) - 11:52, 6 December 2022
- ...wers.com/Q/How_do_you_replace_the_belt_tensioner_on_a_92_Saturn_sl1?#slide=1 ...d it for free. Here's a hint to start your car without pressing the break, 1) push in start, 2) let go, 3) push in again and hold for 30 seconds. You ca12 KB (1,654 words) - 15:14, 7 January 2024
- ...0/07/08/r-package-integration-with-modern-reusable-c-code-using-rcpp/ Part 1] if (nx > 1 & ny > 1) stop("Only one parameter can be a vector!");34 KB (4,410 words) - 20:45, 22 May 2023
- [https://t.co/rfKF3ABFJp?amp=1 useR 2019] & [https://youtu.be/YEQ5xFewbdA?t=891 youtube] # [1] ‘3.12’25 KB (3,049 words) - 13:45, 17 April 2024
- ...riant annotation, we will get a bug report message. The main output files (1 vcf and 2 texts files) are generated but the pdf/html files cannot be creat A subset of GSE48215 (about 1/10 of the original FASTQ files) created to run the benchmark.19 KB (2,682 words) - 16:41, 20 October 2022
- ...l/traveler-magazine/photo-contest/2014/entries/gallery/outdoor-scenes-week-1/ National Geographic Travel Photo Contest 2014] works for '''curl''' but no ==> TYPE I ... done. ==> CWD (1) /Drosophila_melanogaster/Ensembl/BDGP6 ... done.18 KB (2,498 words) - 12:33, 10 February 2024
- y ~ x + (1|group) # random intercepts, same slope for groups lme(y ~ 1 + randonm = ~1 | Random) # one-way random model46 KB (5,482 words) - 16:33, 10 December 2023
- brw-rw---- 1 root disk 31, 0 Dec 10 06:00 /dev/mtdblock0 ...and in the terminal: '''sudo dd if=/dev/zero of=/dev/mtdblock0 bs=1M count=1'''13 KB (2,211 words) - 20:32, 18 April 2024
- {| border="1" style="border-collapse:collapse; text-align:center;" | || || 1 || 0 ||44 KB (6,015 words) - 17:06, 29 October 2023
- * I tried to install from the source (v2.2.1) on Ubuntu 14.04. The canonical method ./configure, make & sudo make instal time rvm install ruby-2.1.43 KB (484 words) - 17:11, 24 November 2019
- x <- 1:100 summary(model2)$r.squared # 151 KB (6,774 words) - 17:54, 6 April 2024
- static_ip="192.168.1.14/24" static_gw="192.168.1.1"21 KB (3,167 words) - 13:51, 17 May 2024