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Combined display of all available logs of 太極. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 10:21, 25 January 2023 Brb talk contribs created page File:VscodeEnergy.png
- 10:21, 25 January 2023 Brb talk contribs uploaded File:VscodeEnergy.png
- 22:26, 14 January 2023 Brb talk contribs created page File:RbdGeom.png (<pre> require(ggplot2) aggregate( .~ treatment +block,FUN=median, data = data) |> ggplot(aes(treatment, yield)) + geom_line(aes(group = block, color = block), linewidth = 1.2) + geom_point(aes(color = block), shape = 15, size=2.6) </pre>)
- 22:26, 14 January 2023 Brb talk contribs uploaded File:RbdGeom.png (<pre> require(ggplot2) aggregate( .~ treatment +block,FUN=median, data = data) |> ggplot(aes(treatment, yield)) + geom_line(aes(group = block, color = block), linewidth = 1.2) + geom_point(aes(color = block), shape = 15, size=2.6) </pre>)
- 21:51, 14 January 2023 Brb talk contribs created page File:RbdBlock.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:51, 14 January 2023 Brb talk contribs uploaded File:RbdBlock.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:50, 14 January 2023 Brb talk contribs created page File:RbdTreat.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:50, 14 January 2023 Brb talk contribs uploaded File:RbdTreat.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 12:18, 12 January 2023 Brb talk contribs created page File:GseaTable2.png (An example of a plot from 10 non-enriched pathways. <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # NES pval # 1: -0.4050950 1.0000000 # 2: -0.4050950 1.0000000 # 3: -0.4966664 0.9932584 # 4: 0.4804114 0.9870610 # 5: 0.4804114 0.9870610 # 6: 0.4804114 0.9870610 # 7: 0.4804114 0.9870610 # 8: 0.4955139 0.9854...)
- 12:18, 12 January 2023 Brb talk contribs uploaded File:GseaTable2.png (An example of a plot from 10 non-enriched pathways. <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # NES pval # 1: -0.4050950 1.0000000 # 2: -0.4050950 1.0000000 # 3: -0.4966664 0.9932584 # 4: 0.4804114 0.9870610 # 5: 0.4804114 0.9870610 # 6: 0.4804114 0.9870610 # 7: 0.4804114 0.9870610 # 8: 0.4955139 0.9854...)
- 12:01, 12 January 2023 Brb talk contribs created page File:GseaTable.png (<pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) # I pick 5 pathways with + NES and 5 pathways with - NES. fgseaRes[order(pval), ][62:71, c('pathway', 'NES')] # pathway NES # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.95...)
- 12:01, 12 January 2023 Brb talk contribs uploaded File:GseaTable.png (<pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) # I pick 5 pathways with + NES and 5 pathways with - NES. fgseaRes[order(pval), ][62:71, c('pathway', 'NES')] # pathway NES # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.95...)
- 12:15, 8 January 2023 Brb talk contribs created page File:Reorder.dendrogram.png (<pre> set.seed(123) x <- rnorm(20) hc <- hclust(dist(x)) dd <- as.dendrogram(hc) par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20) plot(reorder(dd, 20:1), main = 'reorder(dd, 20:1, sum)') plot(reorder(dd, 20:1, mean), main = 'reorder(dd, 20:1, mean)') </pre>)
- 12:15, 8 January 2023 Brb talk contribs uploaded File:Reorder.dendrogram.png (<pre> set.seed(123) x <- rnorm(20) hc <- hclust(dist(x)) dd <- as.dendrogram(hc) par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20) plot(reorder(dd, 20:1), main = 'reorder(dd, 20:1, sum)') plot(reorder(dd, 20:1, mean), main = 'reorder(dd, 20:1, mean)') </pre>)
- 21:37, 7 January 2023 Brb talk contribs created page File:ComplexHeatmap2.png (<syntaxhighlight lang="rsplus"> # Simulate data library(ComplexHeatmap) ng <- 30; ns <- 20 set.seed(1) mat <- matrix(rnorm(ng*ns), nr=ng, nc=ns) colnames(mat) <- 1:ns rownames(mat) <- 1:ng # color bar on RHS ind_e <- 1:round(ng/3) ind_m <- (1+round(ng/3)):ng epimes <- rep(c("epi", "mes"), c(length(ind_e), length(ind_m))) row_ha <- rowAnnotation(epimes = epimes, col = list(epimes = c("epi" = "orange", "mes" = "darkgreen"))) # color bar on Top tumortype <- rep(c("carcinoma", "sarcoma"...)
- 21:37, 7 January 2023 Brb talk contribs uploaded File:ComplexHeatmap2.png (<syntaxhighlight lang="rsplus"> # Simulate data library(ComplexHeatmap) ng <- 30; ns <- 20 set.seed(1) mat <- matrix(rnorm(ng*ns), nr=ng, nc=ns) colnames(mat) <- 1:ns rownames(mat) <- 1:ng # color bar on RHS ind_e <- 1:round(ng/3) ind_m <- (1+round(ng/3)):ng epimes <- rep(c("epi", "mes"), c(length(ind_e), length(ind_m))) row_ha <- rowAnnotation(epimes = epimes, col = list(epimes = c("epi" = "orange", "mes" = "darkgreen"))) # color bar on Top tumortype <- rep(c("carcinoma", "sarcoma"...)
- 12:37, 6 January 2023 Brb talk contribs created page File:Fgsea3plots.png (<pre> par(mfrow=c(1,3)) with(fgseaRes, plot(abs(ES), pval)) with(fgseaRes, plot(abs(NES), pval)) with(fgseaRes, plot(ES, NES)) </pre>)
- 12:37, 6 January 2023 Brb talk contribs uploaded File:Fgsea3plots.png (<pre> par(mfrow=c(1,3)) with(fgseaRes, plot(abs(ES), pval)) with(fgseaRes, plot(abs(NES), pval)) with(fgseaRes, plot(ES, NES)) </pre>)
- 14:58, 31 December 2022 Brb talk contribs created page File:Filebrowser.png
- 14:58, 31 December 2022 Brb talk contribs uploaded File:Filebrowser.png
- 20:07, 25 December 2022 Brb talk contribs created page File:DisableDropbox4pm.png
- 20:07, 25 December 2022 Brb talk contribs uploaded File:DisableDropbox4pm.png
- 15:40, 15 December 2022 Brb talk contribs created page File:Geom smooth ex.png (<pre> library(dplyr) #group the data by cyl and create the plots mpg %>% group_by(cyl) %>% ggplot(aes(x=displ, y=hwy, color=factor(cyl))) + geom_point() + geom_smooth(method = "lm", se = FALSE) + theme(legend.position="none") </pre>)
- 15:40, 15 December 2022 Brb talk contribs uploaded File:Geom smooth ex.png (<pre> library(dplyr) #group the data by cyl and create the plots mpg %>% group_by(cyl) %>% ggplot(aes(x=displ, y=hwy, color=factor(cyl))) + geom_point() + geom_smooth(method = "lm", se = FALSE) + theme(legend.position="none") </pre>)
- 15:14, 15 December 2022 Brb talk contribs created page File:Geom bar4.png (<pre> ggplot(mpg, aes(x = class)) + geom_vline(xintercept = mpg$class, color = "grey", linetype = "dashed", size = 1) + geom_bar() + theme_classic() + coord_flip() </pre>)
- 15:14, 15 December 2022 Brb talk contribs uploaded File:Geom bar4.png (<pre> ggplot(mpg, aes(x = class)) + geom_vline(xintercept = mpg$class, color = "grey", linetype = "dashed", size = 1) + geom_bar() + theme_classic() + coord_flip() </pre>)
- 15:08, 15 December 2022 Brb talk contribs created page File:Geom bar3.png (<pre> ggplot(mpg, aes(x=manufacturer)) + geom_bar() + theme(panel.grid.major.x = element_blank(), panel.grid.minor = element_blank()) </pre>)
- 15:08, 15 December 2022 Brb talk contribs uploaded File:Geom bar3.png (<pre> ggplot(mpg, aes(x=manufacturer)) + geom_bar() + theme(panel.grid.major.x = element_blank(), panel.grid.minor = element_blank()) </pre>)
- 14:41, 15 December 2022 Brb talk contribs created page File:Geom bar2.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", fill = "#F8767D") + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0, 0, 1))) +...)
- 14:41, 15 December 2022 Brb talk contribs uploaded File:Geom bar2.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", fill = "#F8767D") + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0, 0, 1))) +...)
- 14:39, 15 December 2022 Brb talk contribs created page File:Geom bar1.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", aes(fill = x)) + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0,...)
- 14:39, 15 December 2022 Brb talk contribs uploaded File:Geom bar1.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", aes(fill = x)) + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0,...)
- 18:00, 5 December 2022 Brb talk contribs created page File:GpartedinfoSanDisk.png
- 18:00, 5 December 2022 Brb talk contribs uploaded File:GpartedinfoSanDisk.png
- 09:17, 5 November 2022 Brb talk contribs created page Car (Created page with "= General resource = * [https://www.howacarworks.com How a car works] - The ultimate guide to how cars work. * [https://m.wikihow.com/Maintain-a-Car How to Maintain a Car] * [...")
- 15:55, 29 October 2022 Brb talk contribs created page File:ExampleRanks.png (<pre> plot(exampleRanks) </pre>)
- 15:55, 29 October 2022 Brb talk contribs uploaded File:ExampleRanks.png (<pre> plot(exampleRanks) </pre>)
- 15:39, 29 October 2022 Brb talk contribs created page File:FgseaPlotSmallm.png
- 15:39, 29 October 2022 Brb talk contribs uploaded File:FgseaPlotSmallm.png
- 15:15, 27 October 2022 Brb talk contribs created page File:DHdialog2.png
- 15:15, 27 October 2022 Brb talk contribs uploaded File:DHdialog2.png
- 15:15, 27 October 2022 Brb talk contribs created page File:DHdialog1.png
- 15:15, 27 October 2022 Brb talk contribs uploaded File:DHdialog1.png
- 09:46, 27 October 2022 Brb talk contribs created page File:HC single.png
- 09:46, 27 October 2022 Brb talk contribs uploaded File:HC single.png
- 20:41, 26 October 2022 Brb talk contribs created page Game (Created page with "= Linux = * [https://itsfoss.com/download-linux-games/ Fantastic Linux Games and Where to Find Them] * [https://www.makeuseof.com/tag/best-linux-games/ The 10 Best Linux Games...")
- 10:48, 20 October 2022 Brb talk contribs created page File:1NN better NC.png
- 10:48, 20 October 2022 Brb talk contribs uploaded File:1NN better NC.png
- 17:26, 19 October 2022 Brb talk contribs created page File:NC better kNN.png (The green color is a new observation (Sensitive). By using the kNN method, it will be assigned to Resistant b/c it is closer to the Resistant group. However, using the NC, the distance of it to the Resistant group centroid is 8.42 which is larger than the distance of it to the Sensitive groups centroid 7.31. So NC classified it to Sensitive. Color annotation: green=LOO obs, black=centroid in each class.)
- 17:26, 19 October 2022 Brb talk contribs uploaded File:NC better kNN.png (The green color is a new observation (Sensitive). By using the kNN method, it will be assigned to Resistant b/c it is closer to the Resistant group. However, using the NC, the distance of it to the Resistant group centroid is 8.42 which is larger than the distance of it to the Sensitive groups centroid 7.31. So NC classified it to Sensitive. Color annotation: green=LOO obs, black=centroid in each class.)
- 11:03, 12 October 2022 Brb talk contribs created page File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 11:03, 12 October 2022 Brb talk contribs uploaded File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 16:39, 11 October 2022 Brb talk contribs created page File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 16:39, 11 October 2022 Brb talk contribs uploaded File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 07:57, 7 October 2022 Brb talk contribs created page Prediction (Created page with "= Gradient boost = * https://en.wikipedia.org/wiki/Gradient_boosting * [https://datascienceplus.com/gradient-boosting-in-r/ Gradient boosting in R] == GBDT: Gradient Boosting...")
- 14:12, 6 October 2022 Brb talk contribs created page File:Greedypairs.png
- 14:12, 6 October 2022 Brb talk contribs uploaded File:Greedypairs.png
- 11:11, 6 October 2022 Brb talk contribs uploaded a new version of File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs created page File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs created page File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot base.png
- 11:50, 30 August 2022 Brb talk contribs created page File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 11:50, 30 August 2022 Brb talk contribs uploaded File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 10:31, 30 August 2022 Brb talk contribs created page File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:31, 30 August 2022 Brb talk contribs uploaded File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:08, 30 August 2022 Brb talk contribs created page File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 10:08, 30 August 2022 Brb talk contribs uploaded File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 14:19, 29 August 2022 Brb talk contribs created page File:Rbiomirgs barall.png
- 14:19, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs barall.png
- 14:17, 29 August 2022 Brb talk contribs created page File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs created page File:Rbiomirgs volcano.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs volcano.png
- 07:08, 27 August 2022 Brb talk contribs created page File:FgseaPlotTop.png
- 07:08, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotTop.png
- 06:34, 27 August 2022 Brb talk contribs created page File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs created page File:FgseaPlotSmall.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall.png
- 06:33, 27 August 2022 Brb talk contribs created page File:FgseaPlot.png
- 06:33, 27 August 2022 Brb talk contribs uploaded File:FgseaPlot.png
- 15:02, 23 August 2022 Brb talk contribs created page File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 15:02, 23 August 2022 Brb talk contribs uploaded File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 14:19, 22 August 2022 Brb talk contribs created page File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 14:19, 22 August 2022 Brb talk contribs uploaded File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 10:21, 10 August 2022 Brb talk contribs created page File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 10:21, 10 August 2022 Brb talk contribs uploaded File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 19:55, 23 June 2022 Brb talk contribs created page File:Tidyheatmap.png
- 19:55, 23 June 2022 Brb talk contribs uploaded File:Tidyheatmap.png
- 15:22, 21 June 2022 Brb talk contribs created page File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs created page File:BatchqcDE.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcDE.png
- 15:21, 21 June 2022 Brb talk contribs created page File:BatchqcVariation.png
- 15:21, 21 June 2022 Brb talk contribs uploaded File:BatchqcVariation.png
- 15:20, 21 June 2022 Brb talk contribs created page File:BatchqcSummary.png
- 15:20, 21 June 2022 Brb talk contribs uploaded File:BatchqcSummary.png
- 20:43, 8 June 2022 Brb talk contribs created page Fstab (Created page with "* man fstab * https://help.ubuntu.com/community/Fstab ** Format: [Device] [Mount Point] [File System Type] [Options] [Dump] [Pass] ** <dump> Enable or disable backing up of th...")
- 18:02, 4 June 2022 Brb talk contribs created page File:Heatmap rdylbu.png
- 18:02, 4 June 2022 Brb talk contribs uploaded File:Heatmap rdylbu.png
- 15:02, 4 June 2022 Brb talk contribs created page Self hosting (Created page with "= Resource = * [https://github.com/mycroftwilde/portainer_templates Helpful Youtube Channels for Self-Hosting] = [http://www.proxmox.com/en/ Proxmox Virtual Environment] = *...")
- 10:06, 27 May 2022 Brb talk contribs created page File:Inter gg2.png
- 10:06, 27 May 2022 Brb talk contribs uploaded File:Inter gg2.png
- 09:51, 27 May 2022 Brb talk contribs created page File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs created page File:Inter base.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter base.png
- 09:16, 27 May 2022 Brb talk contribs uploaded a new version of File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs created page File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs uploaded File:Inter base.svg
- 10:08, 26 May 2022 Brb talk contribs created page File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 10:08, 26 May 2022 Brb talk contribs uploaded File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 13:35, 16 May 2022 Brb talk contribs created page Batch effect (Created page with "= Merging two gene expression studies, ComBat = * [https://www.coursera.org/lecture/statistical-genomics/module-2-overview-1-12-cbqYZ Statistics for Genomic Data Science] (Cou...")
- 12:56, 10 May 2022 Brb talk contribs created page File:ColorRampBlueRed.png
- 12:56, 10 May 2022 Brb talk contribs uploaded File:ColorRampBlueRed.png
- 09:34, 30 April 2022 Brb talk contribs created page Docker Applications (Created page with "[https://kuonsam.miraheze.org/wiki/Setting_Up_a_Docker_Server#Install_Docker-compose Setting Up a Docker Server] (host OS is CentOS) = Dockerizing Compiled Software = https:/...")
- 19:39, 24 March 2022 Brb talk contribs created page File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:39, 24 March 2022 Brb talk contribs uploaded File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs created page File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs uploaded File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 14:13, 18 March 2022 Brb talk contribs created page File:SnrVScor.png
- 14:13, 18 March 2022 Brb talk contribs uploaded File:SnrVScor.png
- 14:10, 18 March 2022 Brb talk contribs created page File:CorVSsnr.svg
- 14:10, 18 March 2022 Brb talk contribs uploaded File:CorVSsnr.svg
- 19:22, 14 March 2022 Brb talk contribs created page Filesystem (Created page with "= squashfs = '''squashfs''' is a heavy-compression based read-only filesystem that is capable of compressing 2 to 3 GB of data onto a 700MB. Linux liveCD are built using squas...")
- 14:15, 5 March 2022 Brb talk contribs created page File:AntiX21 mmedia.png
- 14:15, 5 March 2022 Brb talk contribs uploaded File:AntiX21 mmedia.png
- 17:23, 22 February 2022 WikiSysop talk contribs blocked Dli7319 talk contribs with an expiration time of indefinite (account creation disabled)
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- 03:37, 22 February 2022 User account Akymylaz talk contribs was created
- 15:12, 9 February 2022 Brb talk contribs created page Cancer (Created page with "= 癌症 Cancer = * [https://1drv.ms/u/s!Am92ICmSSQXujWZnlGy0JJjK1Gj6 生活中9種引發癌症最危險的因子] * [https://health.udn.com/health/story/6008/3053686 用手...")
- 22:31, 2 February 2022 Brb talk contribs created page File:WewatchJetsonnano-min.png
- 22:31, 2 February 2022 Brb talk contribs uploaded File:WewatchJetsonnano-min.png
- 10:17, 29 January 2022 Brb talk contribs created page Regression (Created page with "= Linear Regression = * [https://leanpub.com/regmods Regression Models for Data Science in R] by Brian Caffo * [https://avehtari.github.io/ROS-Examples/ Regression and Other S...")
- 17:04, 22 January 2022 172.70.134.227 talk created page Wine (Created page with "<ul> <li>[https://askubuntu.com/a/999295 How to run exe file in Ubuntu] <pre> sudo apt-get install wine wine dir/WAV2RAW.exe </pre> </li> <li>[https://www.linuxuprising.com/20...")
- 23:50, 16 January 2022 User account Unsightlyskit66 talk contribs was created
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- 15:13, 29 December 2021 Brb talk contribs created page Eink (Created page with "* https://twitter.com/hashtag/epaper * https://github.com/topics/eink * [https://www.raspberrypi.org/blog/using-e-ink-raspberry-pi/ Using E Ink displays with a Raspberry Pi] *...")
- 10:33, 19 December 2021 Brb talk contribs created page Tidymodels (Created page with "= Tidymodels and tune = * [https://cran.r-project.org/web/packages/tidymodels/index.html tidymodels], [https://cran.r-project.org/web/packages/tune/index.html tune] * https://...")
- 14:28, 14 December 2021 Brb talk contribs created page Venn diagram (Created page with "* [https://cran.r-project.org/web/packages/eulerr/index.html eulerr] package * [https://codingenes.wordpress.com/2013/09/30/visualization-biological-data-using-proportional-ve...")
- 11:12, 27 November 2021 Brb talk contribs created page Remote desktop (Created page with "= x11vnc = * [https://www.makeuseof.com/install-ubuntu-vnc-server-linux/ How to Install and Run a VNC Server on Ubuntu Linux] 2021 [https://www.cloudsavvyit.com/7725/how-to-co...")
- 10:45, 27 November 2021 Brb talk contribs created page Chroot (Created page with "* https://help.ubuntu.com/community/BasicChroot * https://help.ubuntu.com/community/DebootstrapChroot * http://www.thegeekstuff.com/2010/01/debootstrap-minimal-debian-ubuntu-i...")
- 10:11, 17 November 2021 Brb talk contribs created page File:Atnormalize.png
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- 09:41, 22 October 2021 Brb talk contribs created page Jetson (Created page with "Jetson nano https://www.nvidia.com/en-us/autonomous-machines/embedded-systems/jetson-nano/ * [https://youtu.be/4cftyAq_J9g Now One Of The BEST SBCs For Emulation Project ARES...")
- 10:31, 11 October 2021 Brb talk contribs created page Linux Distribution (Created page with "== Run from RAM == [https://en.wikipedia.org/wiki/List_of_Linux_distributions_that_run_from_RAM List of Linux distributions that run from RAM] == Linux Distro for Your Cloud...")
- 12:22, 15 September 2021 Brb talk contribs created page File:Jupyter.drawio.png
- 12:22, 15 September 2021 Brb talk contribs uploaded File:Jupyter.drawio.png
- 09:43, 14 August 2021 Brb talk contribs created page File:VscodeR.png
- 09:43, 14 August 2021 Brb talk contribs uploaded File:VscodeR.png
- 14:42, 12 August 2021 Brb talk contribs created page Bootstrap (Created page with "= General = * [https://en.wikipedia.org/wiki/Bootstrapping_%28statistics%29 Bootstrap] from Wikipedia. ** This contains an overview of different methods for computing bootstr...")
- 14:00, 11 August 2021 Brb talk contribs created page Pharmacokinetics (Created page with "* https://en.wikipedia.org/wiki/Pharmacodynamics, https://en.wikipedia.org/wiki/Pharmacokinetics * [https://www.acnp.org/g4/GN401000085/CH084.html Pharmacokinetics and Pharmac...")
- 11:31, 31 July 2021 Brb talk contribs created page Alpine (Created page with "* [https://alpinelinux.org/ Alpine Linux] * https://en.wikipedia.org/wiki/Alpine_Linux * [https://www.makeuseof.com/alpine-linux-explained/ Alpine Linux: A Breath of Fresh Mou...")
- 15:08, 10 July 2021 Brb talk contribs created page Remarkable (Created page with "= General = * [https://blog.remarkable.com/introducing-read-on-remarkable-6981369b6399 Introducing Read on reMarkable] ** [https://www.reddit.com/r/RemarkableTablet/comments/m...")
- 16:58, 24 June 2021 Brb talk contribs created page File:Infercnv.png
- 16:58, 24 June 2021 Brb talk contribs uploaded File:Infercnv.png
- 16:36, 18 June 2021 Brb talk contribs created page LVM (Created page with "* [http://www.linuxjournal.com/content/lvm-demystified LVM Demystified] * [https://www.itzgeek.com/post/how-to-install-ubuntu-20-04-lts/ How To Install Ubuntu 20.04 LTS (Focal...")
- 10:20, 11 June 2021 Brb talk contribs created page File:Hmapseqcolor.png
- 10:20, 11 June 2021 Brb talk contribs uploaded File:Hmapseqcolor.png
- 15:18, 6 May 2021 Brb talk contribs created page Statistical computing (Created page with "= Resources = [https://biodatascience.github.io/statcomp/?s=09 BIOS 735 - Introduction to Statistical Computing] Naim Rashid")
- 17:07, 30 April 2021 Brb talk contribs created page File:BarcodeRanks.png
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- 20:20, 21 March 2021 Brb talk contribs created page File:SsGSEA.png
- 20:20, 21 March 2021 Brb talk contribs uploaded File:SsGSEA.png
- 14:12, 20 March 2021 Brb talk contribs created page GSEA (Created page with "= GSEA = https://en.wikipedia.org/wiki/Gene_set_enrichment_analysis Determines whether an a priori defined set of genes shows statistically significant, concordant difference...")
- 10:53, 20 March 2021 Brb talk contribs created page VPN (Created page with "= Resource = * [http://lifehacker.com/the-biggest-misconceptions-about-vpns-1794038237 The Biggest Misconceptions About VPNs] * [http://lifehacker.com/why-is-everyone-talking-...")
- 12:09, 4 March 2021 Brb talk contribs created page RetroPie (Created page with "Retro Game Console/Emulator = Resource = * [https://smile.amazon.com/Super-NES-Classic-nintendo/dp/B0721GGGS9/ Super NES Classic] loaded with 21 games! [https://www.reviewgeek...")
- 14:57, 1 March 2021 Brb talk contribs created page ScRNA (Created page with "= Resource = * https://github.com/seandavi/awesome-single-cell#tutorials-and-workflows List of software packages for single-cell data analysis collected by Sean Davis * [http:...")
- 10:50, 24 January 2021 Brb talk contribs created page File:Scalefill.png
- 10:50, 24 January 2021 Brb talk contribs uploaded File:Scalefill.png
- 16:22, 20 January 2021 Brb talk contribs created page Arch Linux (Created page with "= Resource = * [https://itsfoss.com/why-use-manjaro-linux/ 7 Reasons Why I Use Manjaro Linux And You Should Too] * [https://www.ostechnix.com/convert-deb-packages-arch-linux-p...")
- 22:29, 2 January 2021 Brb talk contribs created page File:Winerating.png
- 22:29, 2 January 2021 Brb talk contribs uploaded File:Winerating.png
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- 20:06, 1 January 2021 Brb talk contribs created page ICC (Created page with "ICC: intra-class correlation * https://en.wikipedia.org/wiki/Intraclass_correlation ** [https://www.statisticshowto.com/intraclass-correlation/ Intraclass Correlation] from S...")
- 10:35, 26 November 2020 Brb talk contribs created page KVM (Created page with "= Resource = * [http://www.linux-kvm.org/page/Main_Page KVM] Kernel-based Virtual Machine * https://en.wikipedia.org/wiki/Kernel-based_Virtual_Machine * [https://virt-manager....")
- 08:07, 11 November 2020 Brb talk contribs created page Travel (Created page with "= Misc = * [http://www.makeuseof.com/tag/plan-vacation-free-windows-apps/ Don’t Spend a Dime Planning Your Next Vacation] * [http://www.lifehack.org/411012/7-essential-tools...")
- 15:28, 7 November 2020 Brb talk contribs created page File:Ksnip.png
- 15:28, 7 November 2020 Brb talk contribs uploaded File:Ksnip.png
- 09:43, 26 September 2020 Brb talk contribs created page File:Coffeeinteract.png
- 09:43, 26 September 2020 Brb talk contribs uploaded File:Coffeeinteract.png
- 10:48, 24 September 2020 Brb talk contribs uploaded a new version of File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image002.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image004.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://ww...)
- 09:41, 24 September 2020 Brb talk contribs created page File:Zlj9991056240002.jpeg
- 09:41, 24 September 2020 Brb talk contribs uploaded File:Zlj9991056240002.jpeg
- 09:07, 24 September 2020 Brb talk contribs created page File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image006.jpg") x1 <- image_read(u[1]) x2 <- image_read(u[2]) x3 <- image_read(u[3]) x4 <- image_read(u[4]) imgU <- image_append(image_s...)
- 09:07, 24 September 2020 Brb talk contribs uploaded File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image006.jpg") x1 <- image_read(u[1]) x2 <- image_read(u[2]) x3 <- image_read(u[3]) x4 <- image_read(u[4]) imgU <- image_append(image_s...)
- 10:28, 9 September 2020 Brb talk contribs created page File:Rstudiormarkdown.png (RStudio version 1.3.959 on Ubuntu 20.04)
- 10:28, 9 September 2020 Brb talk contribs uploaded File:Rstudiormarkdown.png (RStudio version 1.3.959 on Ubuntu 20.04)
- 14:51, 28 August 2020 Brb talk contribs created page File:HtopArmbian.png
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- 09:24, 28 August 2020 Brb talk contribs created page File:Lipidtable.jpg
- 09:24, 28 August 2020 Brb talk contribs uploaded File:Lipidtable.jpg
- 08:47, 24 August 2020 Brb talk contribs created page House (Created page with "= Home Improvement = * [https://www.rd.com/home/improvement/13-things-your-plumber-wont-tell-you/ 31 Secrets Your Plumber Won’t Tell You] * [https://www.makeuseof.com/tag/be...")
- 10:29, 15 July 2020 Brb talk contribs created page File:RSEM PDX.png
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- 21:15, 3 July 2020 Brb talk contribs created page File:PrinterInstall.png
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- 17:18, 19 June 2020 Brb talk contribs created page File:Airdrop.png
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- 12:58, 26 May 2020 Brb talk contribs created page File:RstudioBuild.png
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- 07:44, 25 May 2020 Brb talk contribs created page File:GnomeShellExt.png
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- 13:54, 16 May 2020 Brb talk contribs created page File:Neofetchpopos.png
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- 16:39, 4 May 2020 Brb talk contribs created page File:Wifiusb.jpg
- 16:39, 4 May 2020 Brb talk contribs uploaded File:Wifiusb.jpg
- 16:59, 3 May 2020 Brb talk contribs reverted File:KMannotation.png to an old version (Reverted to version as of 16:57, 3 May 2020 (EDT))
- 16:58, 3 May 2020 Brb talk contribs reverted File:KMannotation.png to an old version (Reverted to version as of 21:54, 2 May 2020 (EDT))
- 16:57, 3 May 2020 Brb talk contribs uploaded a new version of File:KMannotation.png
- 21:54, 2 May 2020 Brb talk contribs created page File:KMannotation.png (<pre> library(survival) sf <- survfit(Surv(time, status) ~ x, data = aml) plot(sf, col=c('red', 'black')) </pre>)
- 21:54, 2 May 2020 Brb talk contribs uploaded File:KMannotation.png (<pre> library(survival) sf <- survfit(Surv(time, status) ~ x, data = aml) plot(sf, col=c('red', 'black')) </pre>)
- 13:57, 1 May 2020 Brb talk contribs created page File:Logscale.png
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- 19:17, 14 April 2020 Brb talk contribs created page File:Meldss.png
- 19:17, 14 April 2020 Brb talk contribs uploaded File:Meldss.png
- 07:42, 14 April 2020 Brb talk contribs created page Lua (Created page with "= Source = * https://www.lua.org/ * https://en.wikipedia.org/wiki/Lua_(programming_language) = Install on Ubuntu = [https://www.tecmint.com/install-lua-in-centos-ubuntu-linux...")
- 14:55, 13 April 2020 Brb talk contribs created page File:Glmnetrelaxcv2.png
- 14:55, 13 April 2020 Brb talk contribs uploaded File:Glmnetrelaxcv2.png
- 13:27, 13 April 2020 Brb talk contribs created page File:Glmnetrelaxcv.png
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- 13:27, 13 April 2020 Brb talk contribs created page File:Glmnetrelaxfit.png
- 13:27, 13 April 2020 Brb talk contribs uploaded File:Glmnetrelaxfit.png
- 12:11, 13 April 2020 Brb talk contribs created page File:Glmnet4plotn.png (== Summary == <syntaxhighlight lang='rsplus'> library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar) </syntaxhighlight>)
- 12:11, 13 April 2020 Brb talk contribs uploaded File:Glmnet4plotn.png (== Summary == <syntaxhighlight lang='rsplus'> library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar) </syntaxhighlight>)
- 12:01, 13 April 2020 Brb talk contribs created page File:Glmnet4plot.svg (library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar))
- 12:01, 13 April 2020 Brb talk contribs uploaded File:Glmnet4plot.svg (library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar))
- 11:54, 16 March 2020 Brb talk contribs created page File:NeofetchMac.png
- 11:54, 16 March 2020 Brb talk contribs uploaded File:NeofetchMac.png
- 10:30, 15 February 2020 Brb talk contribs created page R web (Created page with "R Web Applications See also CRAN Task View: [http://cran.r-project.org/web/views/WebTechnologies.html Web Technologies and Services] = Rmarkdown: create HTML5 web, slides an...")