All public logs
Jump to navigation
Jump to search
Combined display of all available logs of 太極. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).
- 17:31, 23 April 2024 Brb talk contribs uploaded File:Polygon.png (<syntaxhighlight lang='r'> plot(c(1, 9), 1:2, type = "n") polygon(1:9, c(2,1,2,1,NA,2,1,2,1), col = c("red", "blue"), border = c("green", "yellow"), lwd = 3, lty = c("dashed", "solid")) </syntaxhighlight>)
- 17:31, 23 April 2024 Brb talk contribs created page File:Polygon.png (<syntaxhighlight lang='r'> plot(c(1, 9), 1:2, type = "n") polygon(1:9, c(2,1,2,1,NA,2,1,2,1), col = c("red", "blue"), border = c("green", "yellow"), lwd = 3, lty = c("dashed", "solid")) </syntaxhighlight>)
- 14:49, 23 April 2024 Brb talk contribs uploaded File:Venn4.png (<syntaxhighlight lang='r'> library(venn) set.seed(12345) x <- list(First = 1:40, Second = 15:60, Third = sample(25:50, 25), Fourth=sample(15:65, 35)) venn(x, ilabels = "counts", zcolor = "style") </syntaxhighlight>)
- 14:49, 23 April 2024 Brb talk contribs created page File:Venn4.png (<syntaxhighlight lang='r'> library(venn) set.seed(12345) x <- list(First = 1:40, Second = 15:60, Third = sample(25:50, 25), Fourth=sample(15:65, 35)) venn(x, ilabels = "counts", zcolor = "style") </syntaxhighlight>)
- 15:53, 17 April 2024 Brb talk contribs uploaded File:Tiv-demo.png
- 15:53, 17 April 2024 Brb talk contribs created page File:Tiv-demo.png
- 20:17, 12 March 2024 Brb talk contribs uploaded File:Filtered R mean.png (Use sample mean instead of variance for each gene as the filter statistic. <syntaxhighlight lang='r'> # Follow the previous code chunks M2 <- rowMeans(exprs(ALL_bcrneg)) theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, M2, p2, theta, method="BH") which.max(R_BH) # 10% <---- so theta=0.1 is the optimal; only 10% genes are removed # 11 max(R_BH) # [1] 270 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.1, lty=2) <...)
- 20:17, 12 March 2024 Brb talk contribs created page File:Filtered R mean.png (Use sample mean instead of variance for each gene as the filter statistic. <syntaxhighlight lang='r'> # Follow the previous code chunks M2 <- rowMeans(exprs(ALL_bcrneg)) theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, M2, p2, theta, method="BH") which.max(R_BH) # 10% <---- so theta=0.1 is the optimal; only 10% genes are removed # 11 max(R_BH) # [1] 270 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.1, lty=2) <...)
- 08:54, 12 March 2024 Brb talk contribs uploaded File:Rainbow v05.png
- 08:54, 12 March 2024 Brb talk contribs created page File:Rainbow v05.png
- 08:53, 12 March 2024 Brb talk contribs uploaded File:Rainbow s05.png
- 08:53, 12 March 2024 Brb talk contribs created page File:Rainbow s05.png
- 08:52, 12 March 2024 Brb talk contribs uploaded File:Rainbow default.png (<syntaxhighlight lang='r'> library(shiny) # Define the UI ui <- fluidPage( titlePanel("Rainbow Color Palette"), sidebarLayout( sidebarPanel( sliderInput("s_value", "Saturation (s):", min = 0, max = 1, value = 1, step = 0.01), sliderInput("v_value", "Value (v):", min = 0, max = 1, value = 1, step = 0.01) ), mainPanel( plotOutput("rainbow_plot") ) ) ) # Define the server server <- function(input, output) { output$rainbow_plot <- renderPlot({ s <-...)
- 08:52, 12 March 2024 Brb talk contribs created page File:Rainbow default.png (<syntaxhighlight lang='r'> library(shiny) # Define the UI ui <- fluidPage( titlePanel("Rainbow Color Palette"), sidebarLayout( sidebarPanel( sliderInput("s_value", "Saturation (s):", min = 0, max = 1, value = 1, step = 0.01), sliderInput("v_value", "Value (v):", min = 0, max = 1, value = 1, step = 0.01) ), mainPanel( plotOutput("rainbow_plot") ) ) ) # Define the server server <- function(input, output) { output$rainbow_plot <- renderPlot({ s <-...)
- 21:41, 11 March 2024 Brb talk contribs uploaded File:Filtered R.png (<syntaxhighlight lang='r'> theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, S2, p2, theta, method="BH") which.max(R_BH) # 60% <---- so theta=0.6 is the optimal filtering threshold # 61 max(R_BH) # [1] 380 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.6, lty=2) </syntaxhighlight>)
- 21:41, 11 March 2024 Brb talk contribs created page File:Filtered R.png (<syntaxhighlight lang='r'> theta <- seq(0, .80, .01) R_BH <- filtered_R(alpha=.10, S2, p2, theta, method="BH") which.max(R_BH) # 60% <---- so theta=0.6 is the optimal filtering threshold # 61 max(R_BH) # [1] 380 plot(theta, R_BH, type="l", xlab=expression(theta), ylab="Rejections", main="BH cutoff = 0.1") abline(v=.6, lty=2) </syntaxhighlight>)
- 21:35, 11 March 2024 Brb talk contribs uploaded File:Filtered p.png (Note: # x-axis "p cutoff" should be "BH cutoff" or "FDR cutoff". # Each curve represents theta (filtering threshold). For example, theta=.1 means 10% of genes are filtered out before we do multiple testing (or BH adjustment). # It is seen the larger the theta, the more hypotheses are rejected at the same FDR cutoff. For example, #* if theta=0, 251 hypotheses are rejected at FDR=.1 #* if theta=.5, 355 hypotheses are rejected at FDR=.1. <syntaxhighlight lang='r'> BiocManager::install("ALL")...)
- 21:35, 11 March 2024 Brb talk contribs created page File:Filtered p.png (Note: # x-axis "p cutoff" should be "BH cutoff" or "FDR cutoff". # Each curve represents theta (filtering threshold). For example, theta=.1 means 10% of genes are filtered out before we do multiple testing (or BH adjustment). # It is seen the larger the theta, the more hypotheses are rejected at the same FDR cutoff. For example, #* if theta=0, 251 hypotheses are rejected at FDR=.1 #* if theta=.5, 355 hypotheses are rejected at FDR=.1. <syntaxhighlight lang='r'> BiocManager::install("ALL")...)
- 16:49, 8 March 2024 Brb talk contribs uploaded File:DataOutliers2.png ({{Pre}} puree <- read.csv("https://gist.githubusercontent.com/arraytools/e851ed88c7456779557fbf3ed67b157a/raw/9971c61fea1db99acbd9de17ea82679ba9811358/dataOutliers2.csv", header=F) plot(puree[,1], puree[, 2], xlab="X", ylab="Y") abline(lm(V2 ~ V1, data = puree)) # robust regression require(MASS) summary(rlm(V2 ~ V1, data = puree)) abline(rr.huber <- rlm(V2 ~ V1, data = puree), col = "blue") # quantile regression library(quantreg) abline(rq(V2 ~ V1, data=puree, tau = 0.5), col = "red") # theil...)
- 16:49, 8 March 2024 Brb talk contribs created page File:DataOutliers2.png ({{Pre}} puree <- read.csv("https://gist.githubusercontent.com/arraytools/e851ed88c7456779557fbf3ed67b157a/raw/9971c61fea1db99acbd9de17ea82679ba9811358/dataOutliers2.csv", header=F) plot(puree[,1], puree[, 2], xlab="X", ylab="Y") abline(lm(V2 ~ V1, data = puree)) # robust regression require(MASS) summary(rlm(V2 ~ V1, data = puree)) abline(rr.huber <- rlm(V2 ~ V1, data = puree), col = "blue") # quantile regression library(quantreg) abline(rq(V2 ~ V1, data=puree, tau = 0.5), col = "red") # theil...)
- 15:27, 7 March 2024 Brb talk contribs uploaded File:DataOutliers.png ({{Pre}} puree <- read.csv("https://gist.githubusercontent.com/arraytools/47d3a46ae1f9a9cd47db350ae2bd2338/raw/b5cccc8e566ff3bef81b1b371e8bfa174c98ef38/dataOutliers.csv", header = FALSE) plot(puree[,1], puree[, 2], xlim=c(0,1), ylim=c(0,1), xlab="X", ylab="Y") abline(0,1, lty=2) abline(lm(V2 ~ V1, data = puree)) # robust regression require(MASS) summary(rlm(V2 ~ V1, data = puree)) abline(rr.huber <- rlm(V2 ~ V1, data = puree), col = "blue") # almost overlapped with lm() # quantile regressio...)
- 15:27, 7 March 2024 Brb talk contribs created page File:DataOutliers.png ({{Pre}} puree <- read.csv("https://gist.githubusercontent.com/arraytools/47d3a46ae1f9a9cd47db350ae2bd2338/raw/b5cccc8e566ff3bef81b1b371e8bfa174c98ef38/dataOutliers.csv", header = FALSE) plot(puree[,1], puree[, 2], xlim=c(0,1), ylim=c(0,1), xlab="X", ylab="Y") abline(0,1, lty=2) abline(lm(V2 ~ V1, data = puree)) # robust regression require(MASS) summary(rlm(V2 ~ V1, data = puree)) abline(rr.huber <- rlm(V2 ~ V1, data = puree), col = "blue") # almost overlapped with lm() # quantile regressio...)
- 22:41, 10 February 2024 Brb talk contribs uploaded File:R162.png
- 22:41, 10 February 2024 Brb talk contribs created page File:R162.png
- 22:53, 8 February 2024 Brb talk contribs uploaded File:Jitterbox.png (<syntaxhighlight lang='r'> nc <- 5 assy <- LETTERS[1:nc] pal <- ggpubr::get_palette("default", nc) set.seed(1) nr <- 5 mat <- matrix(runif(nr*length(assy)), nrow = nr, ncol = length(assy)) set.seed(1) cutoffs <- runif(nc) colnames(mat) <- assy par(mar=c(5,4,1,1)+.1) plot(1, 1, xlim = c(0.5, nc + .5), ylim = c(0,1), type = "n", xlab = "Assay", ylab = "Score", xaxt = 'n') for (i in 1:nc) { rect(i - 0.25, 0, i + 0.25, 1, col = pal[i]) lines(x = c(i - 0.25, i + 0.25), y = c(cutof...)
- 22:53, 8 February 2024 Brb talk contribs created page File:Jitterbox.png (<syntaxhighlight lang='r'> nc <- 5 assy <- LETTERS[1:nc] pal <- ggpubr::get_palette("default", nc) set.seed(1) nr <- 5 mat <- matrix(runif(nr*length(assy)), nrow = nr, ncol = length(assy)) set.seed(1) cutoffs <- runif(nc) colnames(mat) <- assy par(mar=c(5,4,1,1)+.1) plot(1, 1, xlim = c(0.5, nc + .5), ylim = c(0,1), type = "n", xlab = "Assay", ylab = "Score", xaxt = 'n') for (i in 1:nc) { rect(i - 0.25, 0, i + 0.25, 1, col = pal[i]) lines(x = c(i - 0.25, i + 0.25), y = c(cutof...)
- 11:25, 19 January 2024 Brb talk contribs uploaded File:RStudioAbort.png
- 11:25, 19 January 2024 Brb talk contribs created page File:RStudioAbort.png
- 21:39, 25 December 2023 Brb talk contribs created page Linux shell (Created page with "= What’s the Difference Between Bash, Zsh, and Other Linux Shells = https://www.howtogeek.com/68563/htg-explains-what-are-the-differences-between-linux-shells/ = sh (Bourne shell, 1977) = * Basic shell * POSIX-compliant shell = Bash shell = * Can be mostly POSIX compliant * Expose array indices * Regular expression conditionals * Increment assignment operator * Current version: Bash 4 [http://bash.cyberciti.biz/guide/Main_Page Bash shell programming] = Dash = * Mos...")
- 06:22, 22 December 2023 Brb talk contribs created page R Docker (Created page with "= Use with R (r-base) & RStudio IDE: Rocker = <ul> <li>[https://solutions.rstudio.com/environments/docker/ Docker 101 for Data Scientists] by RStudio </li> <li>[https://hub.docker.com/_/r-base r-base] (Official image, R version is tagged), [https://hub.docker.com/r/rocker/rstudio/tags RStudio] <ul> <li>The oldest version of R is 3.1.2 (2014-10-31). '''docke run -it --rm r-base:3.1.2''' <li>[https://www.rocker-project.org/use/managing_users/ Managing Users] </li> <li>[htt...")
- 20:01, 14 November 2023 Brb talk contribs created page Orange pi (Created page with "= Orange pi 5 plus = * [http://www.orangepi.org/html/hardWare/computerAndMicrocontrollers/details/Orange-Pi-5-plus.html Orange Pi 5 Plus (4GB/8GB/16GB)] * Orange pi 5 plus vs Orange pi 5. Orange pi 5 uses RK3588S & Gigabit ethernet but Orange Pi 5 plus uses RK3588 & 2.5G ethernet.")
- 20:38, 15 October 2023 Brb talk contribs uploaded File:Geomerrorbarh.png (<syntaxhighlight lang='rsplus'> df <- data.frame( trt = factor(c("Treatment 1", "Treatment 2", "Treatment 3", "Treatment 4", "Treatment 5")), # treatment resp = c(1, 5, 3, 4, 2), # response se = c(0.1, 0.3, 0.3, 0.2, 0.2) # standard error ) # make 'Treatment 1' shown at the top df$trt <- factor(df$trt, levels = c("Treatment 5", "Treatment 4", "Treatment 3", "Treatment 2", "Treatment 1")) p <- ggplot(df, aes(resp, trt)) + geom_point() p + geom_errorbarh(aes(xmax=resp + se, xmin=resp-se),...)
- 20:38, 15 October 2023 Brb talk contribs created page File:Geomerrorbarh.png (<syntaxhighlight lang='rsplus'> df <- data.frame( trt = factor(c("Treatment 1", "Treatment 2", "Treatment 3", "Treatment 4", "Treatment 5")), # treatment resp = c(1, 5, 3, 4, 2), # response se = c(0.1, 0.3, 0.3, 0.2, 0.2) # standard error ) # make 'Treatment 1' shown at the top df$trt <- factor(df$trt, levels = c("Treatment 5", "Treatment 4", "Treatment 3", "Treatment 2", "Treatment 1")) p <- ggplot(df, aes(resp, trt)) + geom_point() p + geom_errorbarh(aes(xmax=resp + se, xmin=resp-se),...)
- 18:44, 10 October 2023 Brb talk contribs created page Drupal (Created page with "* https://www.drupal.org/home * [https://www.drupal.org/docs/develop/local-server-setup/linux-development-environments/set-up-a-local-development-drupal-site-on-the-latest-ubuntu-lts-version-and-more Advertising sustains the DA. Set up a local development Drupal site on the latest Ubuntu LTS version and more] * [https://www.digitalocean.com/community/tutorials/how-to-develop-a-drupal-9-website-on-your-local-machine-using-docker-and-ddev How To Develop a Drupal 9 Website...")
- 17:32, 9 October 2023 Brb talk contribs uploaded File:Calibre.png
- 17:32, 9 October 2023 Brb talk contribs created page File:Calibre.png
- 09:07, 11 September 2023 Brb talk contribs created page Longitudinal (Created page with "= Mixed Effect Model = * Paper by [http://www.stat.cmu.edu/~brian/463/week07/laird-ware-biometrics-1982.pdf Laird and Ware 1982] * [https://vitalflux.com/fixed-vs-random-vs-mixed-effects-models-examples/ Random effects vs fixed effects model]: There may be factors related to country/region (random variable) which may result in different patients’ responses to the vaccine, and, ''not all countries are included in the study''. * [http://cran.r-project.org/doc/contrib/F...")
- 12:18, 24 August 2023 Brb talk contribs uploaded File:Wheel f400.png
- 12:18, 24 August 2023 Brb talk contribs created page File:Wheel f400.png
- 12:17, 24 August 2023 Brb talk contribs uploaded File:Wheel f8.png
- 12:17, 24 August 2023 Brb talk contribs created page File:Wheel f8.png
- 15:59, 22 August 2023 Brb talk contribs uploaded File:Roc asah.png (<pre> par(mfrow=c(1,2)) roc(aSAH$outcome, aSAH$s100b, plot = T) roc(aSAH$outcome2, aSAH$s100b, plot = T) par(mfrow=c(1,1)) </pre>)
- 15:59, 22 August 2023 Brb talk contribs created page File:Roc asah.png (<pre> par(mfrow=c(1,2)) roc(aSAH$outcome, aSAH$s100b, plot = T) roc(aSAH$outcome2, aSAH$s100b, plot = T) par(mfrow=c(1,1)) </pre>)
- 14:44, 13 August 2023 Brb talk contribs uploaded File:Rotateheatmap.png (<syntaxhighlight lang="rsplus"> library(circlize) set.seed(123) mat = matrix(rnorm(80), 8, 10) rownames(mat) = paste0("R", 1:8) colnames(mat) = paste0("C", 1:10) col_anno = HeatmapAnnotation( df = data.frame(anno1 = 1:10, anno2 = rep(letters[1:3], c(4,3,3))), col = list(anno2 = c("a" = "red", "b" = "blue", "c" = "green"))) row_anno = rowAnnotation( df = data.frame(anno3 = 1:8, anno4 = rep(l...)
- 14:44, 13 August 2023 Brb talk contribs created page File:Rotateheatmap.png (<syntaxhighlight lang="rsplus"> library(circlize) set.seed(123) mat = matrix(rnorm(80), 8, 10) rownames(mat) = paste0("R", 1:8) colnames(mat) = paste0("C", 1:10) col_anno = HeatmapAnnotation( df = data.frame(anno1 = 1:10, anno2 = rep(letters[1:3], c(4,3,3))), col = list(anno2 = c("a" = "red", "b" = "blue", "c" = "green"))) row_anno = rowAnnotation( df = data.frame(anno3 = 1:8, anno4 = rep(l...)
- 16:21, 12 August 2023 Brb talk contribs uploaded File:Rotatedend.png
- 16:21, 12 August 2023 Brb talk contribs created page File:Rotatedend.png
- 16:17, 12 August 2023 Brb talk contribs uploaded File:Dend12.png ({{Pre}} set.seed(123) dat <- matrix(rnorm(20), ncol=2) # perform hierarchical clustering hc <- hclust(dist(dat)) # plot dendrogram plot(hc) # get ordering of leaves ord <- order.dendrogram(as.dendrogram(hc)) ord # [1] 8 3 6 5 10 1 9 7 2 4 # Same as seen on the dendrogram nodes # Rotate the branches (1,9) & (7,2,4) plot(rotate(hc, c("8", "3", "6", "5", "10", "7", "2", "4", "1", "9")), main="Rotated") </pre>)
- 16:17, 12 August 2023 Brb talk contribs created page File:Dend12.png ({{Pre}} set.seed(123) dat <- matrix(rnorm(20), ncol=2) # perform hierarchical clustering hc <- hclust(dist(dat)) # plot dendrogram plot(hc) # get ordering of leaves ord <- order.dendrogram(as.dendrogram(hc)) ord # [1] 8 3 6 5 10 1 9 7 2 4 # Same as seen on the dendrogram nodes # Rotate the branches (1,9) & (7,2,4) plot(rotate(hc, c("8", "3", "6", "5", "10", "7", "2", "4", "1", "9")), main="Rotated") </pre>)
- 16:39, 6 August 2023 Brb talk contribs uploaded File:Plotly3d.png
- 16:39, 6 August 2023 Brb talk contribs created page File:Plotly3d.png
- 19:06, 5 August 2023 Brb talk contribs created page Delta (Created page with "Delta method * https://en.wikipedia.org/wiki/Delta_method * R examples. ** Var(xbar/ybar) https://gist.github.com/arraytools/c39f52b9280f4f1858da83a6bc60f185.")
- 15:39, 31 July 2023 Brb talk contribs uploaded File:Filter single.png
- 15:39, 31 July 2023 Brb talk contribs created page File:Filter single.png
- 11:25, 1 July 2023 Brb talk contribs created page Smartctl (Created page with "= NVME = <pre> $ smartctl -v | head -1 smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.19.0-46-generic] (local build) </pre> <pre> $ sudo smartctl -a /dev/nvme0 smartctl 7.2 2020-12-30 r5155 [x86_64-linux-5.19.0-46-generic] (local build) Copyright (C) 2002-20, Bruce Allen, Christian Franke, www.smartmontools.org === START OF INFORMATION SECTION === Model Number: CT1000P3SSD8 Serial Number: 2314E6C4100F Firmware Version:...")
- 12:47, 27 May 2023 Brb talk contribs uploaded File:Vibrant ink rstheme.png (https://github.com/captaincaed/rstudio/blob/main/vibrant_ink_SB_2.rstheme)
- 12:47, 27 May 2023 Brb talk contribs created page File:Vibrant ink rstheme.png (https://github.com/captaincaed/rstudio/blob/main/vibrant_ink_SB_2.rstheme)
- 13:46, 21 May 2023 Brb talk contribs uploaded File:R2.png (<syntaxhighlight lang='rsplus'> x <- seq(0, 2.5, length=20) y <- sin(x) plot(x, y) abline(lsfit(x, y, intercept = F), col = 'red') summary(fit)$r.squared # [1] 0.8554949 </syntaxhighlight>)
- 13:46, 21 May 2023 Brb talk contribs created page File:R2.png (<syntaxhighlight lang='rsplus'> x <- seq(0, 2.5, length=20) y <- sin(x) plot(x, y) abline(lsfit(x, y, intercept = F), col = 'red') summary(fit)$r.squared # [1] 0.8554949 </syntaxhighlight>)
- 16:02, 11 May 2023 Brb talk contribs uploaded File:Paletteggplot2.png
- 16:02, 11 May 2023 Brb talk contribs created page File:Paletteggplot2.png
- 12:12, 10 May 2023 Brb talk contribs uploaded File:Paletteshowcol.png
- 12:12, 10 May 2023 Brb talk contribs created page File:Paletteshowcol.png
- 11:15, 10 May 2023 Brb talk contribs uploaded File:Palettebarplot.png (<syntaxhighlight lang='rsplus'> pal <- c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3", "#FF7F00") # pal <- sample(colors(), 10) # randomly pick 10 colors barplot(rep(1, length(pal)), col = pal, space = 0, axes = FALSE, border = NA) </syntaxhighlight>)
- 11:15, 10 May 2023 Brb talk contribs created page File:Palettebarplot.png (<syntaxhighlight lang='rsplus'> pal <- c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3", "#FF7F00") # pal <- sample(colors(), 10) # randomly pick 10 colors barplot(rep(1, length(pal)), col = pal, space = 0, axes = FALSE, border = NA) </syntaxhighlight>)
- 11:14, 10 May 2023 Brb talk contribs uploaded File:Paletteheatmap.png (<syntaxhighlight lang='rsplus'> pal <- c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3", "#FF7F00") pal <- matrix(pal, nr=2) # acknowledge a nice warning message pal_matrix <- matrix(seq_along(pal), nr=nrow(pal), nc=ncol(pal)) heatmap(pal_matrix, col = pal, Rowv = NA, Colv = NA, scale = "none", ylab = "", xlab = "", main = "", margins = c(5, 5)) # 2 rows, 3 columns with labeling on two axes </syntaxhighlight>)
- 11:14, 10 May 2023 Brb talk contribs created page File:Paletteheatmap.png (<syntaxhighlight lang='rsplus'> pal <- c("#E41A1C", "#377EB8", "#4DAF4A", "#984EA3", "#FF7F00") pal <- matrix(pal, nr=2) # acknowledge a nice warning message pal_matrix <- matrix(seq_along(pal), nr=nrow(pal), nc=ncol(pal)) heatmap(pal_matrix, col = pal, Rowv = NA, Colv = NA, scale = "none", ylab = "", xlab = "", main = "", margins = c(5, 5)) # 2 rows, 3 columns with labeling on two axes </syntaxhighlight>)
- 11:08, 10 May 2023 Brb talk contribs uploaded File:Rpalette.png (<syntaxhighlight lang='rsplus'> pal <- palette() # [1] "black" "#DF536B" "#61D04F" "#2297E6" "#28E2E5" "#CD0BBC" "#F5C710" # [8] "gray62" pal_matrix <- matrix(seq_along(pal), nr=1) image(pal_matrix, col = pal, axes = FALSE) # 8 rows, 1 column, but no labeling # Starting from bottom, left. par()$usr # change with the data dim text(0, (par()$usr[4]-par()$usr[3])/8*c(0:7), labels = pal) </syntaxhighlight>)
- 11:08, 10 May 2023 Brb talk contribs created page File:Rpalette.png (<syntaxhighlight lang='rsplus'> pal <- palette() # [1] "black" "#DF536B" "#61D04F" "#2297E6" "#28E2E5" "#CD0BBC" "#F5C710" # [8] "gray62" pal_matrix <- matrix(seq_along(pal), nr=1) image(pal_matrix, col = pal, axes = FALSE) # 8 rows, 1 column, but no labeling # Starting from bottom, left. par()$usr # change with the data dim text(0, (par()$usr[4]-par()$usr[3])/8*c(0:7), labels = pal) </syntaxhighlight>)
- 13:52, 9 May 2023 Brb talk contribs uploaded File:Ggplotbarplot.png
- 13:52, 9 May 2023 Brb talk contribs created page File:Ggplotbarplot.png
- 11:40, 9 May 2023 Brb talk contribs uploaded File:Cbioportal cptac.png
- 11:40, 9 May 2023 Brb talk contribs created page File:Cbioportal cptac.png
- 21:07, 25 April 2023 Brb talk contribs uploaded File:Losslesscut.png
- 21:07, 25 April 2023 Brb talk contribs created page File:Losslesscut.png
- 17:47, 23 April 2023 Brb talk contribs uploaded File:Sleepstudy.png (<syntaxhighlight lang='rsplus'> sleepstudy %>% ggplot(aes(x=Days, y = Reaction)) + geom_point() + geom_smooth(method = "lm", se = FALSE) + facet_wrap(~Subject) </syntaxhighlight>)
- 17:47, 23 April 2023 Brb talk contribs created page File:Sleepstudy.png (<syntaxhighlight lang='rsplus'> sleepstudy %>% ggplot(aes(x=Days, y = Reaction)) + geom_point() + geom_smooth(method = "lm", se = FALSE) + facet_wrap(~Subject) </syntaxhighlight>)
- 14:13, 11 April 2023 Brb talk contribs created page Tcga (Created page with "= Resources = * [https://www.cancer.gov/about-nci/organization/ccg/blog/2017/tcga-pancan-atlas TCGA to Complete its Final Analysis: the PanCanAtlas], [https://gdc.cancer.gov/a...")
- 16:58, 17 March 2023 Brb talk contribs uploaded File:Svg4.svg (<pre> svg("svg4.svg", width=4, height=4) plot(1:10, main="width=4, height=4") dev.off() </pre>)
- 16:58, 17 March 2023 Brb talk contribs created page File:Svg4.svg (<pre> svg("svg4.svg", width=4, height=4) plot(1:10, main="width=4, height=4") dev.off() </pre>)
- 10:44, 11 March 2023 Brb talk contribs uploaded File:RStudioVisualMode.png
- 10:44, 11 March 2023 Brb talk contribs created page File:RStudioVisualMode.png
- 16:01, 8 March 2023 Brb talk contribs uploaded File:Pca directly2.png
- 16:01, 8 March 2023 Brb talk contribs created page File:Pca directly2.png
- 11:11, 11 February 2023 Brb talk contribs uploaded File:MultipleProbes.PNG
- 11:11, 11 February 2023 Brb talk contribs created page File:MultipleProbes.PNG
- 11:10, 11 February 2023 Brb talk contribs uploaded File:ClassPredictionOptions.PNG
- 11:10, 11 February 2023 Brb talk contribs created page File:ClassPredictionOptions.PNG
- 11:08, 11 February 2023 Brb talk contribs uploaded File:ClassPrediction.PNG
- 11:08, 11 February 2023 Brb talk contribs created page File:ClassPrediction.PNG
- 21:01, 28 January 2023 Brb talk contribs uploaded File:Pca factoextra.png
- 21:01, 28 January 2023 Brb talk contribs created page File:Pca factoextra.png
- 20:34, 28 January 2023 Brb talk contribs uploaded File:Pca autoplot.png
- 20:34, 28 January 2023 Brb talk contribs created page File:Pca autoplot.png
- 20:34, 28 January 2023 Brb talk contribs uploaded File:Pca directly.png
- 20:34, 28 January 2023 Brb talk contribs created page File:Pca directly.png
- 10:21, 25 January 2023 Brb talk contribs uploaded File:VscodeEnergy.png
- 10:21, 25 January 2023 Brb talk contribs created page File:VscodeEnergy.png
- 22:26, 14 January 2023 Brb talk contribs uploaded File:RbdGeom.png (<pre> require(ggplot2) aggregate( .~ treatment +block,FUN=median, data = data) |> ggplot(aes(treatment, yield)) + geom_line(aes(group = block, color = block), linewidth = 1.2) + geom_point(aes(color = block), shape = 15, size=2.6) </pre>)
- 22:26, 14 January 2023 Brb talk contribs created page File:RbdGeom.png (<pre> require(ggplot2) aggregate( .~ treatment +block,FUN=median, data = data) |> ggplot(aes(treatment, yield)) + geom_line(aes(group = block, color = block), linewidth = 1.2) + geom_point(aes(color = block), shape = 15, size=2.6) </pre>)
- 21:51, 14 January 2023 Brb talk contribs uploaded File:RbdBlock.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:51, 14 January 2023 Brb talk contribs created page File:RbdBlock.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:50, 14 January 2023 Brb talk contribs uploaded File:RbdTreat.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 21:50, 14 January 2023 Brb talk contribs created page File:RbdTreat.png (<pre> set.seed(1234) block <- as.factor(rep(1:5, each=6)) treatment <- rep(c("A","B","C"),5) block_shift <- rnorm(5, mean = 0, sd = 2) treatment_shift <- c(A=0, B=4, C=2) random_effect <- rnorm(30, mean = 0, sd = 1) yield <- rnorm(30, mean = 10, sd = 2) + treatment_shift[as.integer(factor(treatment))] + block_shift[as.numeric(block)] + random_effect data <- data.frame(block, treatment, yield) summary(fm1 <- aov(yield ~ treatment + block, data = data)) # Df Sum Sq Mean Sq...)
- 12:18, 12 January 2023 Brb talk contribs uploaded File:GseaTable2.png (An example of a plot from 10 non-enriched pathways. <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # NES pval # 1: -0.4050950 1.0000000 # 2: -0.4050950 1.0000000 # 3: -0.4966664 0.9932584 # 4: 0.4804114 0.9870610 # 5: 0.4804114 0.9870610 # 6: 0.4804114 0.9870610 # 7: 0.4804114 0.9870610 # 8: 0.4955139 0.9854...)
- 12:18, 12 January 2023 Brb talk contribs created page File:GseaTable2.png (An example of a plot from 10 non-enriched pathways. <pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) fgseaRes[order(pval, decreasing = T),][1:10, c('NES', 'pval')] # NES pval # 1: -0.4050950 1.0000000 # 2: -0.4050950 1.0000000 # 3: -0.4966664 0.9932584 # 4: 0.4804114 0.9870610 # 5: 0.4804114 0.9870610 # 6: 0.4804114 0.9870610 # 7: 0.4804114 0.9870610 # 8: 0.4955139 0.9854...)
- 12:01, 12 January 2023 Brb talk contribs uploaded File:GseaTable.png (<pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) # I pick 5 pathways with + NES and 5 pathways with - NES. fgseaRes[order(pval), ][62:71, c('pathway', 'NES')] # pathway NES # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.95...)
- 12:01, 12 January 2023 Brb talk contribs created page File:GseaTable.png (<pre> data(examplePathways) data(exampleRanks) fgseaRes <- fgsea(examplePathways, exampleRanks, nperm=1000, minSize=15, maxSize=100) # I pick 5 pathways with + NES and 5 pathways with - NES. fgseaRes[order(pval), ][62:71, c('pathway', 'NES')] # pathway NES # 1: 5992282_ECM_proteoglycans 1.984081 # 2: 5992219_Regulation_of_cholesterol_biosynthesis_by_SREBP_SREBF_ 1.95...)
- 12:15, 8 January 2023 Brb talk contribs created page File:Reorder.dendrogram.png (<pre> set.seed(123) x <- rnorm(20) hc <- hclust(dist(x)) dd <- as.dendrogram(hc) par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20) plot(reorder(dd, 20:1), main = 'reorder(dd, 20:1, sum)') plot(reorder(dd, 20:1, mean), main = 'reorder(dd, 20:1, mean)') </pre>)
- 12:15, 8 January 2023 Brb talk contribs uploaded File:Reorder.dendrogram.png (<pre> set.seed(123) x <- rnorm(20) hc <- hclust(dist(x)) dd <- as.dendrogram(hc) par(mfrow=c(3, 1)) plot(dd, main = "random dendrogram 'dd'") # not the same as reorder(dd, 1:20) plot(reorder(dd, 20:1), main = 'reorder(dd, 20:1, sum)') plot(reorder(dd, 20:1, mean), main = 'reorder(dd, 20:1, mean)') </pre>)
- 21:37, 7 January 2023 Brb talk contribs uploaded File:ComplexHeatmap2.png (<syntaxhighlight lang="rsplus"> # Simulate data library(ComplexHeatmap) ng <- 30; ns <- 20 set.seed(1) mat <- matrix(rnorm(ng*ns), nr=ng, nc=ns) colnames(mat) <- 1:ns rownames(mat) <- 1:ng # color bar on RHS ind_e <- 1:round(ng/3) ind_m <- (1+round(ng/3)):ng epimes <- rep(c("epi", "mes"), c(length(ind_e), length(ind_m))) row_ha <- rowAnnotation(epimes = epimes, col = list(epimes = c("epi" = "orange", "mes" = "darkgreen"))) # color bar on Top tumortype <- rep(c("carcinoma", "sarcoma"...)
- 21:37, 7 January 2023 Brb talk contribs created page File:ComplexHeatmap2.png (<syntaxhighlight lang="rsplus"> # Simulate data library(ComplexHeatmap) ng <- 30; ns <- 20 set.seed(1) mat <- matrix(rnorm(ng*ns), nr=ng, nc=ns) colnames(mat) <- 1:ns rownames(mat) <- 1:ng # color bar on RHS ind_e <- 1:round(ng/3) ind_m <- (1+round(ng/3)):ng epimes <- rep(c("epi", "mes"), c(length(ind_e), length(ind_m))) row_ha <- rowAnnotation(epimes = epimes, col = list(epimes = c("epi" = "orange", "mes" = "darkgreen"))) # color bar on Top tumortype <- rep(c("carcinoma", "sarcoma"...)
- 12:37, 6 January 2023 Brb talk contribs uploaded File:Fgsea3plots.png (<pre> par(mfrow=c(1,3)) with(fgseaRes, plot(abs(ES), pval)) with(fgseaRes, plot(abs(NES), pval)) with(fgseaRes, plot(ES, NES)) </pre>)
- 12:37, 6 January 2023 Brb talk contribs created page File:Fgsea3plots.png (<pre> par(mfrow=c(1,3)) with(fgseaRes, plot(abs(ES), pval)) with(fgseaRes, plot(abs(NES), pval)) with(fgseaRes, plot(ES, NES)) </pre>)
- 14:58, 31 December 2022 Brb talk contribs uploaded File:Filebrowser.png
- 14:58, 31 December 2022 Brb talk contribs created page File:Filebrowser.png
- 20:07, 25 December 2022 Brb talk contribs uploaded File:DisableDropbox4pm.png
- 20:07, 25 December 2022 Brb talk contribs created page File:DisableDropbox4pm.png
- 15:40, 15 December 2022 Brb talk contribs uploaded File:Geom smooth ex.png (<pre> library(dplyr) #group the data by cyl and create the plots mpg %>% group_by(cyl) %>% ggplot(aes(x=displ, y=hwy, color=factor(cyl))) + geom_point() + geom_smooth(method = "lm", se = FALSE) + theme(legend.position="none") </pre>)
- 15:40, 15 December 2022 Brb talk contribs created page File:Geom smooth ex.png (<pre> library(dplyr) #group the data by cyl and create the plots mpg %>% group_by(cyl) %>% ggplot(aes(x=displ, y=hwy, color=factor(cyl))) + geom_point() + geom_smooth(method = "lm", se = FALSE) + theme(legend.position="none") </pre>)
- 15:14, 15 December 2022 Brb talk contribs uploaded File:Geom bar4.png (<pre> ggplot(mpg, aes(x = class)) + geom_vline(xintercept = mpg$class, color = "grey", linetype = "dashed", size = 1) + geom_bar() + theme_classic() + coord_flip() </pre>)
- 15:14, 15 December 2022 Brb talk contribs created page File:Geom bar4.png (<pre> ggplot(mpg, aes(x = class)) + geom_vline(xintercept = mpg$class, color = "grey", linetype = "dashed", size = 1) + geom_bar() + theme_classic() + coord_flip() </pre>)
- 15:08, 15 December 2022 Brb talk contribs uploaded File:Geom bar3.png (<pre> ggplot(mpg, aes(x=manufacturer)) + geom_bar() + theme(panel.grid.major.x = element_blank(), panel.grid.minor = element_blank()) </pre>)
- 15:08, 15 December 2022 Brb talk contribs created page File:Geom bar3.png (<pre> ggplot(mpg, aes(x=manufacturer)) + geom_bar() + theme(panel.grid.major.x = element_blank(), panel.grid.minor = element_blank()) </pre>)
- 14:41, 15 December 2022 Brb talk contribs uploaded File:Geom bar2.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", fill = "#F8767D") + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0, 0, 1))) +...)
- 14:41, 15 December 2022 Brb talk contribs created page File:Geom bar2.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", fill = "#F8767D") + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0, 0, 1))) +...)
- 14:39, 15 December 2022 Brb talk contribs uploaded File:Geom bar1.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", aes(fill = x)) + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0,...)
- 14:39, 15 December 2022 Brb talk contribs created page File:Geom bar1.png (<pre> library(ggplot2) library(scales) library(patchwork) dtf <- data.frame(x = c("ETB", "PMA", "PER", "KON", "TRA", "DDR", "BUM", "MAT", "HED", "EXP"), y = c(.02, .11, -.01, -.03, -.03, .02, .1, -.01, -.02, 0.06)) set.seed(1) dtf2 <- data.frame(x = dtf[, 1], y = sample(dtf[, 2])) g1 <- ggplot(dtf, aes(x, y)) + geom_bar(stat = "identity", aes(fill = x)) + geom_text(aes(label = paste0(y * 100, "%"), hjust = ifelse(y >= 0,...)
- 18:00, 5 December 2022 Brb talk contribs uploaded File:GpartedinfoSanDisk.png
- 18:00, 5 December 2022 Brb talk contribs created page File:GpartedinfoSanDisk.png
- 09:17, 5 November 2022 Brb talk contribs created page Car (Created page with "= General resource = * [https://www.howacarworks.com How a car works] - The ultimate guide to how cars work. * [https://m.wikihow.com/Maintain-a-Car How to Maintain a Car] * [...")
- 15:55, 29 October 2022 Brb talk contribs uploaded File:ExampleRanks.png (<pre> plot(exampleRanks) </pre>)
- 15:55, 29 October 2022 Brb talk contribs created page File:ExampleRanks.png (<pre> plot(exampleRanks) </pre>)
- 15:39, 29 October 2022 Brb talk contribs uploaded File:FgseaPlotSmallm.png
- 15:39, 29 October 2022 Brb talk contribs created page File:FgseaPlotSmallm.png
- 15:15, 27 October 2022 Brb talk contribs uploaded File:DHdialog2.png
- 15:15, 27 October 2022 Brb talk contribs created page File:DHdialog2.png
- 15:15, 27 October 2022 Brb talk contribs uploaded File:DHdialog1.png
- 15:15, 27 October 2022 Brb talk contribs created page File:DHdialog1.png
- 09:46, 27 October 2022 Brb talk contribs uploaded File:HC single.png
- 09:46, 27 October 2022 Brb talk contribs created page File:HC single.png
- 20:41, 26 October 2022 Brb talk contribs created page Game (Created page with "= Linux = * [https://itsfoss.com/download-linux-games/ Fantastic Linux Games and Where to Find Them] * [https://www.makeuseof.com/tag/best-linux-games/ The 10 Best Linux Games...")
- 10:48, 20 October 2022 Brb talk contribs uploaded File:1NN better NC.png
- 10:48, 20 October 2022 Brb talk contribs created page File:1NN better NC.png
- 17:26, 19 October 2022 Brb talk contribs uploaded File:NC better kNN.png (The green color is a new observation (Sensitive). By using the kNN method, it will be assigned to Resistant b/c it is closer to the Resistant group. However, using the NC, the distance of it to the Resistant group centroid is 8.42 which is larger than the distance of it to the Sensitive groups centroid 7.31. So NC classified it to Sensitive. Color annotation: green=LOO obs, black=centroid in each class.)
- 17:26, 19 October 2022 Brb talk contribs created page File:NC better kNN.png (The green color is a new observation (Sensitive). By using the kNN method, it will be assigned to Resistant b/c it is closer to the Resistant group. However, using the NC, the distance of it to the Resistant group centroid is 8.42 which is larger than the distance of it to the Sensitive groups centroid 7.31. So NC classified it to Sensitive. Color annotation: green=LOO obs, black=centroid in each class.)
- 11:03, 12 October 2022 Brb talk contribs uploaded File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 11:03, 12 October 2022 Brb talk contribs created page File:Foldchangefilter.png (<pre> LFC <- log2(1.5) x <- c(0, 0, 0, 0, 0, 0, 0, 0, 3.22, 0, 0, 0, 8.09, 0, 0.65, 0, 0, 0, 0, 0, 3.38, 0, 5.63, 7.46, 0, 0, 4.38, 0) plot(x, y = 1:28, xlab="log2 intensity", ylab="samples") abline(v=LFC, lty="dashed") axis(side=3,at=LFC, labels="LFC", tick=FALSE, line=0) </pre>)
- 16:39, 11 October 2022 Brb talk contribs uploaded File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 16:39, 11 October 2022 Brb talk contribs created page File:Cvglmnetplot.png (<pre> n <- 100 set.seed(1) x1 <- rnorm(n) e <- rnorm(n)*.01 y <- x1 + e x4 <- x fit <- cv.glmnet(x=cbind(x1, x4, matrix(rnorm(n*10), nr=n)), y=y) plot (fit) </pre>)
- 07:57, 7 October 2022 Brb talk contribs created page Prediction (Created page with "= Gradient boost = * https://en.wikipedia.org/wiki/Gradient_boosting * [https://datascienceplus.com/gradient-boosting-in-r/ Gradient boosting in R] == GBDT: Gradient Boosting...")
- 14:12, 6 October 2022 Brb talk contribs uploaded File:Greedypairs.png
- 14:12, 6 October 2022 Brb talk contribs created page File:Greedypairs.png
- 11:11, 6 October 2022 Brb talk contribs uploaded a new version of File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs created page File:Barplot ggplot2.png
- 11:06, 6 October 2022 Brb talk contribs uploaded File:Barplot base.png
- 11:06, 6 October 2022 Brb talk contribs created page File:Barplot base.png
- 11:50, 30 August 2022 Brb talk contribs uploaded File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 11:50, 30 August 2022 Brb talk contribs created page File:Geomcolviridis.png (Modify the example from https://datavizpyr.com/re-ordering-bars-in-barplot-in-r/ to allow filled colors and facet. <pre> library(tidyverse) library(gapminder) library(viridis) theme_set(theme_bw(base_size=16)) pop_df <- gapminder %>% filter(year==2007)%>% group_by(continent) %>% summarize(pop_in_millions=sum(pop)/1e06) pop_df2 <- tibble(class=rbinom(nrow(pop_df), 1, .5), pop_df) pop_df2 <- pop_df2 |> mutate(pop_in_millions = pop_in_millions-1900) pop_df2 %>% ggplot(aes...)
- 10:31, 30 August 2022 Brb talk contribs uploaded File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:31, 30 August 2022 Brb talk contribs created page File:ViridisDefault.png (<pre> library(viridis) n = 200 image( 1:n, 1, as.matrix(1:n), col = viridis(n, option = "D"), xlab = "viridis n", ylab = "", xaxt = "n", yaxt = "n", bty = "n" ) </pre>)
- 10:08, 30 August 2022 Brb talk contribs uploaded File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 10:08, 30 August 2022 Brb talk contribs created page File:ScaleFillViridisDiscrete.png (See https://r-graph-gallery.com/79-levelplot-with-ggplot2.html <pre> library(ggplot2) # library(hrbrthemes) # Dummy data x <- LETTERS[1:20] y <- paste0("var", seq(1,20)) data <- expand.grid(X=x, Y=y) data$Z <- runif(400, 0, 5) library(viridis) ggplot(data, aes(X, Y, fill= Z)) + geom_tile() + scale_fill_viridis(discrete=FALSE) </pre>)
- 14:19, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs barall.png
- 14:19, 29 August 2022 Brb talk contribs created page File:Rbiomirgs barall.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs created page File:Rbiomirgs bar.png
- 14:17, 29 August 2022 Brb talk contribs uploaded File:Rbiomirgs volcano.png
- 14:17, 29 August 2022 Brb talk contribs created page File:Rbiomirgs volcano.png
- 07:08, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotTop.png
- 07:08, 27 August 2022 Brb talk contribs created page File:FgseaPlotTop.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs created page File:FgseaPlotSmall2.png
- 06:34, 27 August 2022 Brb talk contribs uploaded File:FgseaPlotSmall.png
- 06:34, 27 August 2022 Brb talk contribs created page File:FgseaPlotSmall.png
- 06:33, 27 August 2022 Brb talk contribs uploaded File:FgseaPlot.png
- 06:33, 27 August 2022 Brb talk contribs created page File:FgseaPlot.png
- 15:02, 23 August 2022 Brb talk contribs uploaded File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 15:02, 23 August 2022 Brb talk contribs created page File:ComplexHeatmap1.png (<pre> library(ComplexHeatmap) set.seed(123) ng <- 10; n <- 10 mat = matrix(rnorm(ng * n), n) rownames(mat) = paste0("R", 1:ng) colnames(mat) = paste0("C", 1:n) bin <- sample(c("resistant", "sensitive"), n, replace = TRUE) tgi <- runif(n) # sort the columns by tgi ord <- order(tgi) col_fun = circlize::colorRamp2(range(tgi), c("#DEEBF7", "#084594")) column_ha = HeatmapAnnotation(tgi = tgi[ord], bin = bin[ord], col = list(tgi = col_fun,...)
- 14:19, 22 August 2022 Brb talk contribs uploaded File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 14:19, 22 August 2022 Brb talk contribs created page File:Doubledip.png (<pre> ng <- 1000 # number of genes ns <- 100 # number of samples k <- 2 # number of groups alpha <- .001 # cutoff of selecting sig genes set.seed(1) x = matrix(rnorm(ng * ns), nr= ns) # samples x features hc = hclust(dist(x)) plot(hc) grp = cutree(hc, k=k) # vector of group membership ex <- t(x) r1 <- genefilter::rowttests(ex, factor(grp)) sum(r1$p.value < alpha) # 2 hist(r1$p.value) i <- which(r1$p.value < alpha) i1 <- i[1] ; i2 <- i[2] plot(x[, i1], x[, i2], col = grp, pch= 16, cex=1...)
- 10:21, 10 August 2022 Brb talk contribs uploaded File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 10:21, 10 August 2022 Brb talk contribs created page File:Ruspini.png (library(cluster) # ruspini is 75 x 2 data(ruspini) hc <- hclust(dist(ruspini), "ave"); plot(hc) # si <- silhouette(groups, dist(ruspini)) # plot(si, main = paste("k = ", 4)) op <- par(mfrow= c(3,2), oma= c(0,0, 3, 0), mgp= c(1.6,.8,0), mar= .1+c(4,2,2,2)) plot(hc) for(k in 2:6) { groups<- cutree(hc, k=k) si <- silhouette(groups, dist(ruspini)) plot(si, main = paste("k = ", k)) } par(op))
- 19:55, 23 June 2022 Brb talk contribs uploaded File:Tidyheatmap.png
- 19:55, 23 June 2022 Brb talk contribs created page File:Tidyheatmap.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs created page File:BatchqcPCA.png
- 15:22, 21 June 2022 Brb talk contribs uploaded File:BatchqcDE.png
- 15:22, 21 June 2022 Brb talk contribs created page File:BatchqcDE.png
- 15:21, 21 June 2022 Brb talk contribs uploaded File:BatchqcVariation.png
- 15:21, 21 June 2022 Brb talk contribs created page File:BatchqcVariation.png
- 15:20, 21 June 2022 Brb talk contribs uploaded File:BatchqcSummary.png
- 15:20, 21 June 2022 Brb talk contribs created page File:BatchqcSummary.png
- 20:43, 8 June 2022 Brb talk contribs created page Fstab (Created page with "* man fstab * https://help.ubuntu.com/community/Fstab ** Format: [Device] [Mount Point] [File System Type] [Options] [Dump] [Pass] ** <dump> Enable or disable backing up of th...")
- 18:02, 4 June 2022 Brb talk contribs uploaded File:Heatmap rdylbu.png
- 18:02, 4 June 2022 Brb talk contribs created page File:Heatmap rdylbu.png
- 15:02, 4 June 2022 Brb talk contribs created page Self hosting (Created page with "= Resource = * [https://github.com/mycroftwilde/portainer_templates Helpful Youtube Channels for Self-Hosting] = [http://www.proxmox.com/en/ Proxmox Virtual Environment] = *...")
- 10:06, 27 May 2022 Brb talk contribs uploaded File:Inter gg2.png
- 10:06, 27 May 2022 Brb talk contribs created page File:Inter gg2.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs created page File:Inter gg.png
- 09:51, 27 May 2022 Brb talk contribs uploaded File:Inter base.png
- 09:51, 27 May 2022 Brb talk contribs created page File:Inter base.png
- 09:16, 27 May 2022 Brb talk contribs uploaded a new version of File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs uploaded File:Inter base.svg
- 09:04, 27 May 2022 Brb talk contribs created page File:Inter base.svg
- 10:08, 26 May 2022 Brb talk contribs uploaded File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 10:08, 26 May 2022 Brb talk contribs created page File:LogisticFail.svg (> set.seed(1234); n <- 16; mu=3; x <- c(rnorm(n), rnorm(n, mu)); y <- rep(0:1, each=n) > summary(glm(y ~ x, family = binomial)); plot(x, y))
- 13:35, 16 May 2022 Brb talk contribs created page Batch effect (Created page with "= Merging two gene expression studies, ComBat = * [https://www.coursera.org/lecture/statistical-genomics/module-2-overview-1-12-cbqYZ Statistics for Genomic Data Science] (Cou...")
- 12:56, 10 May 2022 Brb talk contribs uploaded File:ColorRampBlueRed.png
- 12:56, 10 May 2022 Brb talk contribs created page File:ColorRampBlueRed.png
- 09:34, 30 April 2022 Brb talk contribs created page Docker Applications (Created page with "[https://kuonsam.miraheze.org/wiki/Setting_Up_a_Docker_Server#Install_Docker-compose Setting Up a Docker Server] (host OS is CentOS) = Dockerizing Compiled Software = https:/...")
- 19:39, 24 March 2022 Brb talk contribs uploaded File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:39, 24 March 2022 Brb talk contribs created page File:Rerrorbars.png (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs uploaded File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 19:37, 24 March 2022 Brb talk contribs created page File:Rerrorbar.svg (<pre> library(ggplot2) df <- ToothGrowth df$dosef <- as.factor(df$dose) library(dplyr) df.summary <- df %>% group_by(dosef) %>% summarise( sd = sd(len, na.rm = TRUE), len = mean(len) ) df.summary p1 <- ggplot(df, aes(dosef, len)) + geom_jitter(position = position_jitter(0.2, seed=1), color = "darkgray") + geom_point(aes(x=dosef, y=len), shape="+", size=8, data=df.summary) + geom_errorbar(aes(ymin = len-sd, ymax = len+sd), width=.2, data = df.summary) df.summary$dose <...)
- 14:13, 18 March 2022 Brb talk contribs uploaded File:SnrVScor.png
- 14:13, 18 March 2022 Brb talk contribs created page File:SnrVScor.png
- 14:10, 18 March 2022 Brb talk contribs uploaded File:CorVSsnr.svg
- 14:10, 18 March 2022 Brb talk contribs created page File:CorVSsnr.svg
- 19:22, 14 March 2022 Brb talk contribs created page Filesystem (Created page with "= squashfs = '''squashfs''' is a heavy-compression based read-only filesystem that is capable of compressing 2 to 3 GB of data onto a 700MB. Linux liveCD are built using squas...")
- 14:15, 5 March 2022 Brb talk contribs uploaded File:AntiX21 mmedia.png
- 14:15, 5 March 2022 Brb talk contribs created page File:AntiX21 mmedia.png
- 15:12, 9 February 2022 Brb talk contribs created page Cancer (Created page with "= 癌症 Cancer = * [https://1drv.ms/u/s!Am92ICmSSQXujWZnlGy0JJjK1Gj6 生活中9種引發癌症最危險的因子] * [https://health.udn.com/health/story/6008/3053686 用手...")
- 22:31, 2 February 2022 Brb talk contribs uploaded File:WewatchJetsonnano-min.png
- 22:31, 2 February 2022 Brb talk contribs created page File:WewatchJetsonnano-min.png
- 10:17, 29 January 2022 Brb talk contribs created page Regression (Created page with "= Linear Regression = * [https://leanpub.com/regmods Regression Models for Data Science in R] by Brian Caffo * [https://avehtari.github.io/ROS-Examples/ Regression and Other S...")
- 15:13, 29 December 2021 Brb talk contribs created page Eink (Created page with "* https://twitter.com/hashtag/epaper * https://github.com/topics/eink * [https://www.raspberrypi.org/blog/using-e-ink-raspberry-pi/ Using E Ink displays with a Raspberry Pi] *...")
- 10:33, 19 December 2021 Brb talk contribs created page Tidymodels (Created page with "= Tidymodels and tune = * [https://cran.r-project.org/web/packages/tidymodels/index.html tidymodels], [https://cran.r-project.org/web/packages/tune/index.html tune] * https://...")
- 14:28, 14 December 2021 Brb talk contribs created page Venn diagram (Created page with "* [https://cran.r-project.org/web/packages/eulerr/index.html eulerr] package * [https://codingenes.wordpress.com/2013/09/30/visualization-biological-data-using-proportional-ve...")
- 11:12, 27 November 2021 Brb talk contribs created page Remote desktop (Created page with "= x11vnc = * [https://www.makeuseof.com/install-ubuntu-vnc-server-linux/ How to Install and Run a VNC Server on Ubuntu Linux] 2021 [https://www.cloudsavvyit.com/7725/how-to-co...")
- 10:45, 27 November 2021 Brb talk contribs created page Chroot (Created page with "* https://help.ubuntu.com/community/BasicChroot * https://help.ubuntu.com/community/DebootstrapChroot * http://www.thegeekstuff.com/2010/01/debootstrap-minimal-debian-ubuntu-i...")
- 10:11, 17 November 2021 Brb talk contribs uploaded File:Atnormalize.png
- 10:11, 17 November 2021 Brb talk contribs created page File:Atnormalize.png
- 09:41, 22 October 2021 Brb talk contribs created page Jetson (Created page with "Jetson nano https://www.nvidia.com/en-us/autonomous-machines/embedded-systems/jetson-nano/ * [https://youtu.be/4cftyAq_J9g Now One Of The BEST SBCs For Emulation Project ARES...")
- 10:31, 11 October 2021 Brb talk contribs created page Linux Distribution (Created page with "== Run from RAM == [https://en.wikipedia.org/wiki/List_of_Linux_distributions_that_run_from_RAM List of Linux distributions that run from RAM] == Linux Distro for Your Cloud...")
- 12:22, 15 September 2021 Brb talk contribs uploaded File:Jupyter.drawio.png
- 12:22, 15 September 2021 Brb talk contribs created page File:Jupyter.drawio.png
- 09:43, 14 August 2021 Brb talk contribs uploaded File:VscodeR.png
- 09:43, 14 August 2021 Brb talk contribs created page File:VscodeR.png
- 14:42, 12 August 2021 Brb talk contribs created page Bootstrap (Created page with "= General = * [https://en.wikipedia.org/wiki/Bootstrapping_%28statistics%29 Bootstrap] from Wikipedia. ** This contains an overview of different methods for computing bootstr...")
- 14:00, 11 August 2021 Brb talk contribs created page Pharmacokinetics (Created page with "* https://en.wikipedia.org/wiki/Pharmacodynamics, https://en.wikipedia.org/wiki/Pharmacokinetics * [https://www.acnp.org/g4/GN401000085/CH084.html Pharmacokinetics and Pharmac...")
- 11:31, 31 July 2021 Brb talk contribs created page Alpine (Created page with "* [https://alpinelinux.org/ Alpine Linux] * https://en.wikipedia.org/wiki/Alpine_Linux * [https://www.makeuseof.com/alpine-linux-explained/ Alpine Linux: A Breath of Fresh Mou...")
- 15:08, 10 July 2021 Brb talk contribs created page Remarkable (Created page with "= General = * [https://blog.remarkable.com/introducing-read-on-remarkable-6981369b6399 Introducing Read on reMarkable] ** [https://www.reddit.com/r/RemarkableTablet/comments/m...")
- 16:58, 24 June 2021 Brb talk contribs uploaded File:Infercnv.png
- 16:58, 24 June 2021 Brb talk contribs created page File:Infercnv.png
- 16:36, 18 June 2021 Brb talk contribs created page LVM (Created page with "* [http://www.linuxjournal.com/content/lvm-demystified LVM Demystified] * [https://www.itzgeek.com/post/how-to-install-ubuntu-20-04-lts/ How To Install Ubuntu 20.04 LTS (Focal...")
- 10:20, 11 June 2021 Brb talk contribs uploaded File:Hmapseqcolor.png
- 10:20, 11 June 2021 Brb talk contribs created page File:Hmapseqcolor.png
- 15:18, 6 May 2021 Brb talk contribs created page Statistical computing (Created page with "= Resources = [https://biodatascience.github.io/statcomp/?s=09 BIOS 735 - Introduction to Statistical Computing] Naim Rashid")
- 17:07, 30 April 2021 Brb talk contribs uploaded File:BarcodeRanks.png
- 17:07, 30 April 2021 Brb talk contribs created page File:BarcodeRanks.png
- 17:01, 30 April 2021 Brb talk contribs uploaded File:Cellrangersum.png
- 17:01, 30 April 2021 Brb talk contribs created page File:Cellrangersum.png
- 20:20, 21 March 2021 Brb talk contribs uploaded File:SsGSEA.png
- 20:20, 21 March 2021 Brb talk contribs created page File:SsGSEA.png
- 14:12, 20 March 2021 Brb talk contribs created page GSEA (Created page with "= GSEA = https://en.wikipedia.org/wiki/Gene_set_enrichment_analysis Determines whether an a priori defined set of genes shows statistically significant, concordant difference...")
- 10:53, 20 March 2021 Brb talk contribs created page VPN (Created page with "= Resource = * [http://lifehacker.com/the-biggest-misconceptions-about-vpns-1794038237 The Biggest Misconceptions About VPNs] * [http://lifehacker.com/why-is-everyone-talking-...")
- 12:09, 4 March 2021 Brb talk contribs created page RetroPie (Created page with "Retro Game Console/Emulator = Resource = * [https://smile.amazon.com/Super-NES-Classic-nintendo/dp/B0721GGGS9/ Super NES Classic] loaded with 21 games! [https://www.reviewgeek...")
- 14:57, 1 March 2021 Brb talk contribs created page ScRNA (Created page with "= Resource = * https://github.com/seandavi/awesome-single-cell#tutorials-and-workflows List of software packages for single-cell data analysis collected by Sean Davis * [http:...")
- 10:50, 24 January 2021 Brb talk contribs uploaded File:Scalefill.png
- 10:50, 24 January 2021 Brb talk contribs created page File:Scalefill.png
- 16:22, 20 January 2021 Brb talk contribs created page Arch Linux (Created page with "= Resource = * [https://itsfoss.com/why-use-manjaro-linux/ 7 Reasons Why I Use Manjaro Linux And You Should Too] * [https://www.ostechnix.com/convert-deb-packages-arch-linux-p...")
- 22:29, 2 January 2021 Brb talk contribs uploaded File:Winerating.png
- 22:29, 2 January 2021 Brb talk contribs created page File:Winerating.png
- 21:26, 2 January 2021 Brb talk contribs uploaded File:Rating.png
- 21:26, 2 January 2021 Brb talk contribs created page File:Rating.png
- 20:56, 2 January 2021 Brb talk contribs uploaded a new version of File:Rating.png
- 20:46, 2 January 2021 Brb talk contribs uploaded File:Rating.png
- 20:46, 2 January 2021 Brb talk contribs created page File:Rating.png
- 20:06, 1 January 2021 Brb talk contribs created page ICC (Created page with "ICC: intra-class correlation * https://en.wikipedia.org/wiki/Intraclass_correlation ** [https://www.statisticshowto.com/intraclass-correlation/ Intraclass Correlation] from S...")
- 10:35, 26 November 2020 Brb talk contribs created page KVM (Created page with "= Resource = * [http://www.linux-kvm.org/page/Main_Page KVM] Kernel-based Virtual Machine * https://en.wikipedia.org/wiki/Kernel-based_Virtual_Machine * [https://virt-manager....")
- 08:07, 11 November 2020 Brb talk contribs created page Travel (Created page with "= Misc = * [http://www.makeuseof.com/tag/plan-vacation-free-windows-apps/ Don’t Spend a Dime Planning Your Next Vacation] * [http://www.lifehack.org/411012/7-essential-tools...")
- 15:28, 7 November 2020 Brb talk contribs uploaded File:Ksnip.png
- 15:28, 7 November 2020 Brb talk contribs created page File:Ksnip.png
- 09:43, 26 September 2020 Brb talk contribs uploaded File:Coffeeinteract.png
- 09:43, 26 September 2020 Brb talk contribs created page File:Coffeeinteract.png
- 10:48, 24 September 2020 Brb talk contribs uploaded a new version of File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image002.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image004.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://ww...)
- 09:41, 24 September 2020 Brb talk contribs uploaded File:Zlj9991056240002.jpeg
- 09:41, 24 September 2020 Brb talk contribs created page File:Zlj9991056240002.jpeg
- 09:07, 24 September 2020 Brb talk contribs created page File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image006.jpg") x1 <- image_read(u[1]) x2 <- image_read(u[2]) x3 <- image_read(u[3]) x4 <- image_read(u[4]) imgU <- image_append(image_s...)
- 09:07, 24 September 2020 Brb talk contribs uploaded File:Progpreg.png (<pre> library(magick) u <- c("https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image001.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image003.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image005.jpg", "https://www.ncbi.nlm.nih.gov/books/NBK402284/bin/prognostic_predictive-Image006.jpg") x1 <- image_read(u[1]) x2 <- image_read(u[2]) x3 <- image_read(u[3]) x4 <- image_read(u[4]) imgU <- image_append(image_s...)
- 10:28, 9 September 2020 Brb talk contribs created page File:Rstudiormarkdown.png (RStudio version 1.3.959 on Ubuntu 20.04)
- 10:28, 9 September 2020 Brb talk contribs uploaded File:Rstudiormarkdown.png (RStudio version 1.3.959 on Ubuntu 20.04)
- 14:51, 28 August 2020 Brb talk contribs uploaded File:HtopArmbian.png
- 14:51, 28 August 2020 Brb talk contribs created page File:HtopArmbian.png
- 09:24, 28 August 2020 Brb talk contribs uploaded File:Lipidtable.jpg
- 09:24, 28 August 2020 Brb talk contribs created page File:Lipidtable.jpg
- 08:47, 24 August 2020 Brb talk contribs created page House (Created page with "= Home Improvement = * [https://www.rd.com/home/improvement/13-things-your-plumber-wont-tell-you/ 31 Secrets Your Plumber Won’t Tell You] * [https://www.makeuseof.com/tag/be...")
- 10:29, 15 July 2020 Brb talk contribs uploaded File:RSEM PDX.png
- 10:29, 15 July 2020 Brb talk contribs created page File:RSEM PDX.png
- 21:15, 3 July 2020 Brb talk contribs uploaded File:PrinterInstall.png
- 21:15, 3 July 2020 Brb talk contribs created page File:PrinterInstall.png
- 17:18, 19 June 2020 Brb talk contribs uploaded File:Airdrop.png
- 17:18, 19 June 2020 Brb talk contribs created page File:Airdrop.png
- 09:16, 3 June 2020 Brb talk contribs uploaded File:Bender2005table2.png
- 09:16, 3 June 2020 Brb talk contribs created page File:Bender2005table2.png
- 09:12, 3 June 2020 Brb talk contribs uploaded File:Bender2005.png
- 09:12, 3 June 2020 Brb talk contribs created page File:Bender2005.png
- 12:58, 26 May 2020 Brb talk contribs uploaded File:RstudioBuild.png
- 12:58, 26 May 2020 Brb talk contribs created page File:RstudioBuild.png
- 07:44, 25 May 2020 Brb talk contribs uploaded File:GnomeShellExt.png
- 07:44, 25 May 2020 Brb talk contribs created page File:GnomeShellExt.png
- 13:54, 16 May 2020 Brb talk contribs uploaded File:Neofetchpopos.png
- 13:54, 16 May 2020 Brb talk contribs created page File:Neofetchpopos.png
- 16:39, 4 May 2020 Brb talk contribs uploaded File:Wifiusb.jpg
- 16:39, 4 May 2020 Brb talk contribs created page File:Wifiusb.jpg
- 16:59, 3 May 2020 Brb talk contribs reverted File:KMannotation.png to an old version (Reverted to version as of 16:57, 3 May 2020 (EDT))
- 16:58, 3 May 2020 Brb talk contribs reverted File:KMannotation.png to an old version (Reverted to version as of 21:54, 2 May 2020 (EDT))
- 16:57, 3 May 2020 Brb talk contribs uploaded a new version of File:KMannotation.png
- 21:54, 2 May 2020 Brb talk contribs uploaded File:KMannotation.png (<pre> library(survival) sf <- survfit(Surv(time, status) ~ x, data = aml) plot(sf, col=c('red', 'black')) </pre>)
- 21:54, 2 May 2020 Brb talk contribs created page File:KMannotation.png (<pre> library(survival) sf <- survfit(Surv(time, status) ~ x, data = aml) plot(sf, col=c('red', 'black')) </pre>)
- 13:57, 1 May 2020 Brb talk contribs uploaded File:Logscale.png
- 13:57, 1 May 2020 Brb talk contribs created page File:Logscale.png
- 20:28, 19 April 2020 Brb talk contribs uploaded File:Pitopos.png
- 20:28, 19 April 2020 Brb talk contribs created page File:Pitopos.png
- 12:35, 17 April 2020 Brb talk contribs uploaded File:Cvcoxnet.png
- 12:35, 17 April 2020 Brb talk contribs created page File:Cvcoxnet.png
- 19:17, 14 April 2020 Brb talk contribs uploaded File:Meldss.png
- 19:17, 14 April 2020 Brb talk contribs created page File:Meldss.png
- 07:42, 14 April 2020 Brb talk contribs created page Lua (Created page with "= Source = * https://www.lua.org/ * https://en.wikipedia.org/wiki/Lua_(programming_language) = Install on Ubuntu = [https://www.tecmint.com/install-lua-in-centos-ubuntu-linux...")
- 14:55, 13 April 2020 Brb talk contribs uploaded File:Glmnetrelaxcv2.png
- 14:55, 13 April 2020 Brb talk contribs created page File:Glmnetrelaxcv2.png
- 13:27, 13 April 2020 Brb talk contribs uploaded File:Glmnetrelaxcv.png
- 13:27, 13 April 2020 Brb talk contribs created page File:Glmnetrelaxcv.png
- 13:27, 13 April 2020 Brb talk contribs uploaded File:Glmnetrelaxfit.png
- 13:27, 13 April 2020 Brb talk contribs created page File:Glmnetrelaxfit.png
- 12:11, 13 April 2020 Brb talk contribs uploaded File:Glmnet4plotn.png (== Summary == <syntaxhighlight lang='rsplus'> library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar) </syntaxhighlight>)
- 12:11, 13 April 2020 Brb talk contribs created page File:Glmnet4plotn.png (== Summary == <syntaxhighlight lang='rsplus'> library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar) </syntaxhighlight>)
- 12:01, 13 April 2020 Brb talk contribs uploaded File:Glmnet4plot.svg (library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar))
- 12:01, 13 April 2020 Brb talk contribs created page File:Glmnet4plot.svg (library(glmnet) data(QuickStartExample) cvfit = cv.glmnet(x, y) fit = glmnet(x, y) oldpar <- par(mfrow=c(2,2)) plot(cvfit) # mse vs log(lambda) plot(fit) # coef vs L1 norm plot(fit, xvar = "lambda", label = TRUE) # coef vs log(lambda) plot(fit, xvar = "dev", label = TRUE) # coef vs Fraction Deviance Explained par(oldpar))
- 11:54, 16 March 2020 Brb talk contribs uploaded File:NeofetchMac.png
- 11:54, 16 March 2020 Brb talk contribs created page File:NeofetchMac.png
- 10:30, 15 February 2020 Brb talk contribs created page R web (Created page with "R Web Applications See also CRAN Task View: [http://cran.r-project.org/web/views/WebTechnologies.html Web Technologies and Services] = Rmarkdown: create HTML5 web, slides an...")
- 16:53, 11 February 2020 Brb talk contribs uploaded File:RstudioNewproj.png
- 16:53, 11 February 2020 Brb talk contribs created page File:RstudioNewproj.png
- 21:59, 5 February 2020 Brb talk contribs created page Glmnet (Created page with "* https://en.wikipedia.org/wiki/Lasso_(statistics). It has a discussion when two covariates are highly correlated. For example if gene <math>i</math> and gene <math>j</math> a...")
- 18:53, 7 January 2020 Brb talk contribs created page Server (Created page with "{| class="wikitable" ! name ! port ! choices |- | ansible | | |- | apache (web) | 80, 443 | |- | backup | | |- | DHCP | | |- | DNS | | |- | Flask | | |- | ftp | |...")
- 22:27, 6 January 2020 Brb talk contribs created page Probability (Created page with "= qbirthday() = If you put 47 random people in a room, there's a 95% chance that at least two share a birthday: qbirthday(0.95). https://www.rdocumentation.org/packages/stats/...")
- 15:11, 1 January 2020 Brb talk contribs created page Ansible (Created page with "= Resource = * https://en.wikipedia.org/wiki/Ansible_(software) * https://github.com/ansible/ansible = Tutorial = * [https://www.howtoforge.com/tutorial/how-to-install-and-co...")
- 21:10, 21 December 2019 Brb talk contribs created page Grub (Created page with "= Resources = * http://www.gnu.org/software/grub/ * https://help.ubuntu.com/community/Grub2 * https://wiki.gentoo.org/wiki/GRUB2 * https://www.dedoimedo.com/computers/grub-2.h...")
- 21:11, 30 November 2019 Brb talk contribs uploaded File:Soundnormalize.png
- 21:11, 30 November 2019 Brb talk contribs created page File:Soundnormalize.png
- 18:23, 29 November 2019 Brb talk contribs uploaded File:Temp4.svg
- 18:23, 29 November 2019 Brb talk contribs created page File:Temp4.svg
- 17:17, 29 November 2019 Brb talk contribs uploaded File:Temp3.svg
- 17:17, 29 November 2019 Brb talk contribs created page File:Temp3.svg
- 17:07, 29 November 2019 Brb talk contribs uploaded File:Temp2.svg
- 17:07, 29 November 2019 Brb talk contribs created page File:Temp2.svg
- 16:57, 29 November 2019 Brb talk contribs uploaded File:Conkypi33.png
- 16:57, 29 November 2019 Brb talk contribs created page File:Conkypi33.png
- 16:48, 29 November 2019 Brb talk contribs uploaded File:Temp.svg
- 16:48, 29 November 2019 Brb talk contribs created page File:Temp.svg
- 14:45, 26 November 2019 Brb talk contribs uploaded File:Udoo bios.jpg
- 14:45, 26 November 2019 Brb talk contribs created page File:Udoo bios.jpg
- 16:02, 25 November 2019 Brb talk contribs uploaded File:Geom boxplot.png (ggplot(data.frame(x), aes(1, x)) + geom_boxplot())
- 16:02, 25 November 2019 Brb talk contribs created page File:Geom boxplot.png (ggplot(data.frame(x), aes(1, x)) + geom_boxplot())
- 15:50, 25 November 2019 Brb talk contribs uploaded File:Geom boxplot.svg
- 15:50, 25 November 2019 Brb talk contribs created page File:Geom boxplot.svg
- 11:43, 8 November 2019 Brb talk contribs created page Font (Created page with "= MS-Word = Some hand writing fonts * Bradley hand * Lucida handwriting * PilGi = Online = * [https://fontsforpeas.com/ Pea Deigh] The font file is peadeigh.ttf. To install...")
- 10:17, 1 November 2019 Brb talk contribs created page Template:Pre (Created page with "<pre style="white-space: pre-wrap; CSS 3: white-space: -moz-pre-wrap; Mozilla, since 1999: white-space: -pre-wrap; Opera 4-6: white-space: -o-pre-wrap; /* Opera...")
- 20:59, 2 October 2019 Brb talk contribs created page Tools (Created page with "= Routers = [https://www.reviewgeek.com/23635/the-four-best-routers-the-woodworking-tool-not-the-internet-device/ The Four Best Routers (The Woodworking Tool, Not the Internet...")
- 11:34, 2 October 2019 Brb talk contribs uploaded File:Rplot100119.png
- 11:34, 2 October 2019 Brb talk contribs created page File:Rplot100119.png
- 11:31, 2 October 2019 Brb talk contribs uploaded File:Rplot100219.svg
- 11:31, 2 October 2019 Brb talk contribs created page File:Rplot100219.svg
- 11:15, 2 October 2019 Brb talk contribs reverted File:Ipcw.svg to an old version (Reverted to version as of 11:10, 2 October 2019 (EDT))
- 11:12, 2 October 2019 Brb talk contribs reverted File:Ipcw.svg to an old version (Reverted to version as of 15:53, 30 May 2018 (EDT))
- 11:10, 2 October 2019 Brb talk contribs uploaded a new version of File:Ipcw.svg
- 15:38, 21 September 2019 Brb talk contribs created page Samba (Created page with "= Samba - allows Linux to transfer files with Windows clients = * http://www.krizna.com/ubuntu/setup-file-server-ubuntu-14-04-samba/ (Anonymous share and Secured share via use...")
- 10:03, 11 September 2019 Brb talk contribs uploaded File:VlcFrameRate.png
- 10:03, 11 September 2019 Brb talk contribs created page File:VlcFrameRate.png
- 12:30, 9 September 2019 Brb talk contribs created page NGS (Created page with "File:CentralDogmaMolecular.png = Introduction to Sequence Data Analysis = * [http://www.rna-seqblog.com/review-of-rna-seq-data-analysis-tools/ Review of RNA-Seq Data Ana...")
- 15:08, 3 September 2019 Brb talk contribs created page Debug (Created page with "= R = == How to debug an R code == === Using assign() in functions === For example, insert the following line to your function <pre> assign(envir=globalenv(), "GlobalVar", lo...")
- 20:48, 31 August 2019 Brb talk contribs created page Debian (Created page with "= Download Debian = [https://www.makeuseof.com/tag/debian-enjoy-one-of-the-most-stable-and-trusted-linux-distributions/ Debian: Enjoy One Of The Most Stable And Trusted Linux...")
- 20:45, 31 August 2019 Brb talk contribs created page SSL (Created page with "= Install commercial SSL certificate = * https://www.digitalocean.com/community/tutorials/how-to-install-an-ssl-certificate-from-a-commercial-certificate-authority * [https://...")
- 20:38, 31 August 2019 Brb talk contribs created page Snappy (Created page with "= [https://en.wikipedia.org/wiki/Snappy_(package_manager) Snappy (package manager)] = * [https://developer.ubuntu.com/en/snappy/ Ubuntu Snappy Core] * [https://snapcraft.io/...")
- 20:25, 31 August 2019 Brb talk contribs created page Video (Created page with "= Video editing in Linux = * [http://www.trelby.org/ Trelby] - A free, multiplatform, feature-rich screenwriting program! * https://wiki.ubuntu.com/ScreenCasts/VideoEditing *...")
- 20:23, 31 August 2019 Brb talk contribs created page UPnP (Created page with "= Jellyfin = [https://www.linuxuprising.com/2018/12/jellyfin-free-software-emby-media.html Jellyfin: Free Software Emby Media Server Fork Is Announced After Emby Becomes Propr...")
- 20:18, 31 August 2019 Brb talk contribs created page Conky (Created page with "[http://conky.sourceforge.net/ Conky] is a free, light-weight system monitor for X, that displays any information on your desktop. * https://help.ubuntu.com/community/Setting...")
- 20:05, 31 August 2019 Brb talk contribs created page Ubuntu software repository (Created page with "= [https://help.ubuntu.com/community/Repositories/Ubuntu Ubuntu Software Repository] = The repository components are: # Main - Officially supported software. # Restricted - S...")
- 20:02, 31 August 2019 Brb talk contribs created page Desktop environment (Created page with "= Selection of [http://en.wikipedia.org/wiki/Desktop_environment desktop environment] = * https://wiki.archlinux.org/index.php/Desktop_environment * [https://linuxconfig.org/8...")
- 19:57, 31 August 2019 Brb talk contribs created page Dual boot (Created page with "= Dual boot Ubuntu and Arch Linux = http://www.linuxandubuntu.com/home/dual-boot-ubuntu-and-arch-linux = MultiSystem – Create a MultiBoot USB from Linux = * [https://itsfos...")
- 10:04, 30 August 2019 Brb talk contribs created page PDF (Created page with "= Change the default viewer = Right Click(pdf)-> Properties-> Open With-> Okular (or anything) -> Set as default. = PDF reader = The default one '''Evince''' seems slow when...")
- 10:02, 30 August 2019 Brb talk contribs created page Images (Created page with "= Convert a color image to black and white = * https://linux.cn/article-8851-1.html * https://www.imagemagick.org/script/command-line-options.php#canny <pre> $ convert filena...")
- 09:55, 30 August 2019 Brb talk contribs created page Extract files (Created page with "= Extract tar.gz or zip to a specified directory = <syntaxhighlight lang='bash'> tar xzvf XXXX.tar.gz -C DIRECTORY # single or double quotes will give an error # # tar xzvf ~/...")
- 09:45, 30 August 2019 Brb talk contribs created page Terminal multiplexer (Created page with "https://en.wikipedia.org/wiki/Terminal_multiplexer = Tilix = A tiling terminal emulator for Linux using GTK+ 3 * https://gnunn1.github.io/tilix-web/ and Ubuntu [https://laun...")
- 13:33, 26 August 2019 Brb talk contribs uploaded File:Check dist.svg
- 13:33, 26 August 2019 Brb talk contribs created page File:Check dist.svg
- 13:33, 26 August 2019 Brb talk contribs uploaded File:Onefacet.svg
- 13:33, 26 August 2019 Brb talk contribs created page File:Onefacet.svg
- 13:32, 26 August 2019 Brb talk contribs uploaded File:Twofacets.svg
- 13:32, 26 August 2019 Brb talk contribs created page File:Twofacets.svg
- 13:31, 26 August 2019 Brb talk contribs uploaded File:Ad public.svg
- 13:31, 26 August 2019 Brb talk contribs created page File:Ad public.svg
- 09:38, 26 August 2019 Brb talk contribs created page PCA (Created page with "Principal component analysis = R source code = <pre> > stats:::prcomp.default function (x, retx = TRUE, center = TRUE, scale. = FALSE, tol = NULL, ...) { x <- as.mat...")
- 09:31, 26 August 2019 Brb talk contribs created page Power (Created page with "= Power analysis/Sample Size determination = * [https://en.wikipedia.org/wiki/Sample_size_determination Sample size determination] from Wikipedia * Power and Sample Size Deter...")
- 21:25, 23 August 2019 Brb talk contribs created page ROC (Created page with "= ROC curve = * Binary case: ** Y = true '''positive''' rate = sensitivity, ** X = false '''positive''' rate = 1-specificity * Area under the curve AUC from the [https://en.w...")
- 21:19, 23 August 2019 Brb talk contribs created page T-test (Created page with "= T-statistic = Let <math style="vertical-align:-.3em">\scriptstyle\hat\beta</math> be an estimator of parameter ''β'' in some statistical model. Then a '''''t''-stat...")
- 14:07, 18 August 2019 Brb talk contribs created page Browser (Created page with "Alternative browsers = Chrome or Chromium = Install the latest version of chromium. <syntaxhighlight lang='bash'> sudo apt install curl git git clone https://github.com/schei...")
- 13:44, 18 August 2019 Brb talk contribs created page Mail server (Created page with "= POP, IMAP and Exchange = * https://support.office.com/en-US/article/What-are-IMAP-and-POP-ca2c5799-49f9-4079-aefe-ddca85d5b1c9?ui=en-US&rs=en-US&ad=US&fromAR=1 * https://www...")
- 21:30, 17 August 2019 Brb talk contribs created page Motioneye (Created page with "= Motion software = * [https://motion-project.github.io/ Motion] * [https://pimylifeup.com/raspberry-pi-webcam-server/ Build a Raspberry Pi Webcam Server in Minutes] (using .d...")
- 14:31, 17 August 2019 Brb talk contribs created page Survival data (Created page with "= Survival data = * [https://www.mayo.edu/research/documents/tr53pdf/DOC-10027379 A Package for Survival Analysis in S] by Terry M. Therneau, 1999 * https://web.stanford.edu/~...")
- 09:13, 16 August 2019 Brb talk contribs created page Office (Created page with "= Office = == Office home use program (HUP) == https://www.microsofthup.com/hupus/home.aspx $9.95 == Change languages == [https://www.makeuseof.com/tag/change-language-micros...")
- 22:04, 14 August 2019 Brb talk contribs created page Ubuntu package (Created page with "= Package maintenance = * https://help.ubuntu.com/community/AptGet/Howto#Maintenance_commands * [http://www.tecmint.com/useful-basic-commands-of-apt-get-and-apt-cache-for-pack...")
- 21:56, 14 August 2019 Brb talk contribs created page Biolinux (Created page with "= [http://nebc.nerc.ac.uk/tools/bio-linux BioLinux] = Bio-Linux 7.0 (2012/11/21) screenshot. Biolinux can be installed in two ways. # One is to download iso image file. htt...")
- 21:49, 14 August 2019 Brb talk contribs created page Tidyverse (Created page with "= Tidyverse = * [https://www.tidyverse.org/ Tidyverse] Homepage * [https://www.rstudio.com/resources/webinars/pipelines-for-data-analysis-in-r/ Pipelines for data analysis in...")
- 09:54, 13 August 2019 Brb talk contribs created page Curl (Created page with "= [http://daniel.haxx.se/docs/curl-vs-wget.html curl vs wget] = <syntaxhighlight lang='bash'> sudo apt-get install curl </syntaxhighlight> For example, the Download link at th...")
- 09:49, 13 August 2019 Brb talk contribs created page Backup (Created page with "= rsync and its GUIs programs = [https://www.howtogeek.com/427480/how-to-back-up-your-linux-system/ How to Back Up Your Linux System] = 13 open source backup solutions = [htt...")
- 09:45, 13 August 2019 Brb talk contribs created page Ssh (Created page with "= SSH = == Best security practices == [https://www.cyberciti.biz/tips/linux-unix-bsd-openssh-server-best-practices.html Top 20 OpenSSH Server Best Security Practices] # Use SS...")
- 15:27, 12 August 2019 Brb talk contribs created page Rook (Created page with " Since R 2.13, the internal web server was exposed. [https://docs.google.com/present/view?id=0AUTe_sntp1JtZGdnbjVicTlfMzFuZDQ5dmJxNw Tutorual from useR2012] and [https://gith...")
- 15:23, 12 August 2019 Brb talk contribs created page Amazing plot (Created page with "= New R logo 2/11/2016 = * http://rud.is/b/2016/02/11/plot-the-new-svg-r-logo-with-ggplot2/ * https://www.stat.auckland.ac.nz/~paul/Reports/Rlogo/Rlogo.html <syntaxhighlight l...")
- 20:32, 22 July 2019 Brb talk contribs uploaded File:Salad.png
- 20:32, 22 July 2019 Brb talk contribs created page File:Salad.png
- 10:25, 12 July 2019 Brb talk contribs created page Rcpp (Created page with "= Misc = * http://cran.r-project.org/web/packages/Rcpp/index.html * [http://lists.r-forge.r-project.org/pipermail/rcpp-devel/ Discussion archive] * (Video) [https://www.rstud...")
- 22:02, 4 July 2019 Brb talk contribs created page R parallel (Created page with "= Introduction = * [http://shop.oreilly.com/product/0636920021421.do Example code] for the book Parallel R by McCallum and Weston. * [http://www.win-vector.com/blog/2016/01/p...")
- 21:21, 1 July 2019 Brb talk contribs created page DNS (Created page with "[https://www.lynda.com/Server-tutorials/Managing-DNS-Essential-Training/453346-2.html Managing DNS Essential Training] from lynda.com")
- 09:13, 1 July 2019 Brb talk contribs created page Reproducible (Created page with "= Rmarkdown = Rmarkdown package = packrat = R packages → packrat = Docker & Singularity = Docker = Misc = * [https://cran.rstud...")
- 14:52, 15 June 2019 Brb talk contribs created page GIMP (Created page with "[https://www.gimp.org/ GIMP] = Grid Photo Collage = [https://effectphoto.blogspot.com/2016/02/grid-photo-collage-in-gimp.html?m=1 Grid Photo Collage In GIMP]")
- 10:11, 15 June 2019 Brb talk contribs created page Go (Created page with "[https://golang.org/ The Go Programming Language] [https://golang.org/doc/code.html How to Write Go Code] [https://gobyexample.com/hello-world Go by Example: Hello World] <s...")
- 11:38, 13 June 2019 Brb talk contribs created page Time series (Created page with "= Intermittent demand = [https://www.brodrigues.co/blog/2019-06-12-intermittent/ Intermittent demand, Croston and Die Hard]")
- 08:43, 11 June 2019 Brb talk contribs created page File:Violinplot.png
- 08:43, 11 June 2019 Brb talk contribs uploaded File:Violinplot.png
- 12:19, 28 May 2019 Brb talk contribs uploaded File:Stacer.png
- 09:19, 23 May 2019 Brb talk contribs uploaded File:Raspberry-pi-pinout.png
- 13:22, 16 May 2019 Brb talk contribs uploaded File:Jitterboxplot.png
- 16:09, 12 April 2019 Brb talk contribs uploaded File:Twopalette.svg (par(mfrow=c(1,2), mar = c(5,2,2,1)) plot(1:8, col=brewer_pal(palette = "Blues")(8), pch=20, cex=4) plot(1:8, col=rev(brewer_pal(palette = "RdBu")(8)), pch=20, cex=4) dev.off())
- 11:18, 13 March 2019 Brb talk contribs uploaded File:RStudio Build.png
- 11:13, 19 February 2019 Brb talk contribs uploaded File:InstallRonMac.png
- 11:24, 19 January 2019 Brb talk contribs uploaded File:Medpyramid.png
- 10:20, 28 October 2018 Brb talk contribs uploaded File:Lotsboxplot.png (Figure from the paper "Multiple Testing When Many p-Values are Uniformly Conservative, with Application to Testing Qualitative Interaction in Educational Interventions" by Qingyuan Zhao et al, JASA 2018)
- 14:00, 9 October 2018 Brb talk contribs uploaded File:Tablebrowser2.png
- 14:00, 9 October 2018 Brb talk contribs uploaded File:Tablebrowser.png
- 13:33, 1 October 2018 Brb talk contribs uploaded a new version of File:Scatterhist.svg (The R source code is at https://gist.github.com/arraytools/7005670b9d4b34e45f45131a6f87d8f4#file-scatterhist_null)
- 13:21, 1 October 2018 Brb talk contribs uploaded File:Scatterhist.svg (scatterhist <- function(x, y, xlab="", ylab=""){ zones=matrix(c(2,0,1,3), ncol=2, byrow=TRUE) layout(zones, widths=c(4/5,1/5), heights=c(1/5,4/5)) xhist = hist(x, plot=FALSE) yhist = hist(y, plot=FALSE) top = max(c(xhist$counts, yhi...)
- 20:36, 22 September 2018 Brb talk contribs uploaded File:MotionSetting.png
- 16:37, 21 September 2018 Brb talk contribs uploaded a new version of File:Boxdot.svg (boxplot(weight ~ feed, data = chickwts) par(new = TRUE) stripchart(weight ~ feed, data = chickwts, xlim=c(0.5,6.5), vertical=TRUE, method="stack", offset=0.8, pch=19, main = "Chicken weights after six weeks", xlab = "Feed Type", ylab = "Weight (g)"))
- 15:50, 21 September 2018 Brb talk contribs uploaded File:Boxdot.svg
- 10:50, 13 September 2018 Brb talk contribs uploaded File:StepfunExample.svg
- 10:26, 28 August 2018 Brb talk contribs uploaded File:Debianproxy.png
- 09:26, 26 August 2018 Brb talk contribs uploaded File:Conkyrpi.png
- 19:56, 23 August 2018 Brb talk contribs uploaded File:Anscombe quartet 3.svg
- 19:15, 23 August 2018 Brb talk contribs uploaded File:Ghostery.png
- 11:30, 17 August 2018 Brb talk contribs uploaded File:PredcurveLogit.svg
- 11:33, 14 August 2018 Brb talk contribs uploaded File:Gene filtering.PNG
- 13:26, 10 August 2018 Brb talk contribs uploaded File:RegisterDoParallel mac.png
- 09:43, 8 August 2018 Brb talk contribs uploaded File:Heatmap ani.gif
- 21:41, 5 August 2018 Brb talk contribs uploaded File:Iris dextend.png
- 12:55, 25 July 2018 Brb talk contribs uploaded File:Ps1tweak.png
- 11:19, 24 July 2018 Brb talk contribs uploaded File:CentosConOnline.png
- 19:22, 20 July 2018 Brb talk contribs uploaded File:Byobu.png
- 09:18, 14 June 2018 Brb talk contribs uploaded File:Glmnet l1norm.svg
- 09:16, 14 June 2018 Brb talk contribs uploaded a new version of File:Glmnet path.svg
- 09:15, 14 June 2018 Brb talk contribs uploaded a new version of File:Glmnet path.svg
- 09:04, 14 June 2018 Brb talk contribs uploaded File:Glmnet path.svg
- 09:34, 6 June 2018 Brb talk contribs uploaded File:Aml time.svg
- 15:53, 30 May 2018 Brb talk contribs uploaded File:Ipcw.svg
- 14:55, 9 May 2018 Brb talk contribs uploaded File:Hist bh.svg
- 11:18, 20 April 2018 Brb talk contribs uploaded File:Ggplot2bar.svg
- 14:51, 17 April 2018 Brb talk contribs uploaded File:C stat scatter.svg
- 11:19, 15 April 2018 Brb talk contribs uploaded File:Kmcurve toy.svg
- 15:59, 3 March 2018 Brb talk contribs uploaded File:Glmnetplot.svg
- 10:21, 1 March 2018 Brb talk contribs uploaded File:R pch.png (source: https://www.statmethods.net/advgraphs/parameters.html)
- 10:19, 1 March 2018 Brb talk contribs uploaded File:R lty.png
- 10:10, 1 March 2018 Brb talk contribs uploaded File:Mint software sources.png
- 16:32, 5 January 2018 Brb talk contribs uploaded File:BiocExplorer.png
- 13:06, 5 January 2018 Brb talk contribs uploaded File:Stklnpt.svg
- 13:34, 2 January 2018 Brb talk contribs uploaded File:GgplotPalette.svg (See the source code at https://gist.github.com/JohannesFriedrich/c7d80b4e47b3331681cab8e9e7a46e17)
- 16:27, 27 December 2017 Brb talk contribs uploaded File:Vblogo48.png
- 16:27, 27 December 2017 Brb talk contribs uploaded File:Ubuntulogo48.png
- 16:27, 27 December 2017 Brb talk contribs uploaded File:Beaglebone48.png
- 17:50, 26 December 2017 Brb talk contribs uploaded File:Tai-chi48.png
- 17:50, 26 December 2017 Brb talk contribs uploaded File:R logo48.png
- 17:49, 26 December 2017 Brb talk contribs uploaded File:Heart48.png
- 17:49, 26 December 2017 Brb talk contribs uploaded File:Docker48.png
- 17:49, 26 December 2017 Brb talk contribs uploaded File:Linux48.png
- 17:49, 26 December 2017 Brb talk contribs uploaded File:Raspberry48.png
- 17:48, 26 December 2017 Brb talk contribs uploaded File:Statistics48.png
- 17:48, 26 December 2017 Brb talk contribs uploaded File:Recipe48.png
- 17:48, 26 December 2017 Brb talk contribs uploaded File:Dna microarray45.png
- 17:07, 19 December 2017 Brb talk contribs uploaded File:Hugo quickstart.png
- 12:51, 13 December 2017 Brb talk contribs uploaded File:KMcurve cumhaz.png
- 11:06, 30 November 2017 Brb talk contribs uploaded File:Webex audio.png
- 14:11, 9 November 2017 Brb talk contribs uploaded File:Ibus.png
- 13:14, 17 October 2017 Brb talk contribs uploaded File:Chromosome len.png
- 20:54, 17 July 2017 Brb talk contribs uploaded File:Tendon ligament diagram.png
- 10:15, 21 June 2017 Brb talk contribs uploaded File:Font-icon.png
- 15:34, 20 June 2017 Brb talk contribs uploaded a new version of File:Seqtoos open3.png
- 15:25, 20 June 2017 Brb talk contribs uploaded File:Seqtoos open3.png
- 15:25, 20 June 2017 Brb talk contribs uploaded File:Seqtoos open2.png
- 15:24, 20 June 2017 Brb talk contribs uploaded File:Seqtoos open1.png
- 08:36, 20 June 2017 Brb talk contribs uploaded File:Iterm open.png
- 15:45, 19 June 2017 Brb talk contribs uploaded File:ChromeMac.png
- 13:56, 15 June 2017 Brb talk contribs uploaded File:Success jdk.png
- 13:19, 15 June 2017 Brb talk contribs uploaded File:Success vbox.png
- 14:15, 7 June 2017 Brb talk contribs uploaded File:BasictexErr.png
- 19:23, 23 May 2017 Brb talk contribs uploaded File:Windows-keyboard.jpg
- 19:20, 23 May 2017 Brb talk contribs uploaded File:Mac-keyboard.jpg
- 15:14, 21 April 2017 Brb talk contribs uploaded File:Realvnc-server.png